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  1. 1.   Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE
  2. Van, Cong T S; Reboul, Cyril F; Caesar, Joseph J E; Meana-Pañeda, Rubén; Lountos,George; Deme, Justin C; Bryant, Owain J; Johnson, Steven; Piczak, Claire T; Valkov, Eugene; Lea, Susan M; Elmlund, Hans
  3. Acta Crystallographica. Section D, Structural biology. 2025, Aug 01;
  1. 2.   Retention outcomes during same-day antiretroviral therapy initiation in health facilities and outreach settings of Rakai, Uganda, 2016-2021
  2. Basiima, Jesca; Ssempijja,Victor; Ndyanabo, Anthony; Bua, Grace Mong; Bbaale, Denis; Chang, Larry W; Serwadda, David; Kagaayi, Joseph; Fitzmaurice, Arthur G; Grabowski, Kate; Nalugoda, Fred; Kigozi, Godfrey; Gray, Ronald; Wawer, Maria; Nakigozi, Gertrude; Reynolds, Steven J
  3. HIV Medicine. 2025, Jul 04;
  1. 3.   Prolonged antiretroviral therapy use and hypertension in a retrospective cross-sectional study-Rakai, Uganda
  2. Mongo Bua, Grace; Ssempijja,Victor; Ndyanabo, Anthony; Nabukalu, Dorean; Basiima, Jesca; Kankaka, Edward Nelson; Nalugoda, Fred; Nakigozi, Gertrude; Kagaayi, Joseph; Chang, Larry W; Post, Wendy S; Quinn, Thomas C; Gray, Ron; Wawer, Maria; Kigozi, Godfrey; Reynolds, Steven J
  3. BMC Infectious Diseases. 2025, Jul 01; 25(1): 860.
  1. 4.   Monotherapy with antibody 1C3 partially protects Ebola virus-exposed macaques
  2. Worwa, Gabriella; Davis, Carl W; Klim, Sarah E; Turcinovic, Jacquelyn; Agans, Krystle N; Borisevich, Viktoriya; Geisbert, Joan B; Cross, Robert W; Crane, Anya; Holbrook, Michael R; Sanchez-Lockhart, Mariano; Kugelman, Jeffrey R; Patino Galindo, Juan A; Geisbert, Thomas W; Ahmed, Rafi; Kuhn, Jens H; Ollmann Saphire, Erica; Palacios, Gustavo; Crozier,Ian
  3. Journal of Virology. 2025, Jun 10; e0029625.
  1. 5.   Incidence and risk factors for tuberculosis at a rural HIV clinic in Uganda, 2012-2019; A retrospective cohort study
  2. Sendagire, Ibrahim; Ssempijja,Victor; Ndyanabo, Anthony; Ssettuba, Absalom; Mawanda, Annie N; Nakigozi, Gertrude; Lukoye, Deus; Fitzmaurice, Arthur G; Muhindo, Richard; Zawedde-Muyanja, Stella; Reynolds, Steven J
  3. BMC Public Health. 2025, May 22; 25(1): 1882.
  1. 6.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 7.   Machine learning-augmented molecular dynamics simulations (MD) reveal insights into the disconnect between affinity and activation of ZTP riboswitch ligands
  2. Fullenkamp, Christopher; Mehdi, Shams; Jones, Christopher; Tenney, Logan; Pichling, Patricio; Prestwood, Peri R; Ferré-D'Amaré, Adrian R; Tiwary, Pratyush; Schneekloth,John
  3. Angewandte Chemie (International ed. in English). 2025, May 01; e202505971.
  1. 8.   A monomeric envelope glycoprotein cytoplasmic tail is sufficient for HIV-1 Gag lattice trapping and incorporation
  2. Groves, Nicholas S; Clark, Austin R; Aguilar, Rebekah S; Hikichi,Yuta; Kostenko, Anastasiia; Bruns, Merissa M; Aron, Alegra T; Freed,Eric; van Engelenburg, Schuyler B
  3. Journal of virology. 2025, Apr 15; e0210524.
  1. 9.   Nanoparticles may influence mast cells gene expression profiles without affecting their degranulation function
  2. Newton,Hannah; Cedrone,Edward; Grunberger, Jason; Xie,Shaojun; Zhao,Yongmei; Tran,Bao; Toms, Bradley; Xu, Weining; Plant-Hately, Alexander; Liptrott, Neill J; Dobrovolskaia,Marina
  3. Nanomedicine : nanotechnology, biology, and medicine. 2025, Apr 02; 102818.
  1. 10.   Use of mobile phones to collect data on COVID-19: phone access and participation rates, in Rakai, Uganda
  2. Ssekubugu, Robert; Ndyanabo, Anthony; Makumbi, Fredrick; Ekström, Anna Mia; Beres, Laura; Nalwoga Kigozi, Grace; Nakawooya, Hadijja; Ssekasanvu, Joseph; Wawer, Maria J; Nalugoda, Fred; Sewankambo, Nelson; Ssempijja,Victor; Nantume, Betty; Serwadda, David; Kigozi, Godfrey; Gray, Ronald H; Chang, Larry W; Grabowski, M Kate; Nordenstedt, Helena; Kagaayi, Joseph
  3. Global Health Action. 2024, Dec 31; 17(1): 2419160.
  1. 11.   Modulating the immunodominance hierarchy of immunoglobulin germline-encoded structural motifs targeting the influenza hemagglutinin stem
  2. Ataca, Sila; Sangesland, Maya; de Paiva Fróes Rocha, Rebeca; Torrents de la Peña, Alba; Ronsard, Larance; Boyoglu-Barnum, Seyhan; Gillespie, Rebecca A; Tsybovsky,Yaroslav; Stephens,Tyler; Moin, Syed M; Lederhofer, Julia; Creanga, Adrian; Andrews, Sarah F; Barnes, Ralston M; Rohrer, Daniel; Lonberg, Nils; Graham, Barney S; Ward, Andrew B; Lingwood, Daniel; Kanekiyo, Masaru
  3. Cell Reports. 2024, Nov 22; 43(12): 114990.
  1. 12.   Associations Between Mosaic Loss of Sex Chromosomes and Incident Hospitalization for Atrial Fibrillation in the United Kingdom
  2. Lim, Jungeun; Hubbard, Aubrey K; Blechter, Batel; Shi, Jianxin; Zhou,Weiyin; Loftfield, Erikka; Machiela, Mitchell J; Wong, Jason Y Y
  3. Journal of the American Heart Association. 2024, Nov 19; 13(22): e036984.
  1. 13.   Extracellular Matrix Limits Nanoparticle Diffusion and Cellular Uptake in a Tissue-Specific Manner
  2. Cahn,Devorah; Stern, Alexa; Buckenmeyer,Michael; Wolf,Matthew; Duncan, Gregg A
  3. ACS Nano. 2024, Nov 05;
  1. 14.   Role of physicochemical properties in silica nanoparticle-mediated immunostimulation
  2. Grunberger, Jason William; Newton,Hannah; Donohue,Duncan; Dobrovolskaia,Marina; Ghandehari, Hamidreza
  3. Nanotoxicology. 2024, Oct 26; 1-19.
  1. 15.   Practical application of good participatory practices for trials of emerging pathogens: Developing materials for use in ACTIV-3, -3b, and ACTIV-associated COVID-19 trials
  2. Guerra-de-Blas, Paola Del Carmen; Marines-Price, Rubria; Milman, Olga; Deal,Danae; Marchand,Jon; Linton,Jessica; Meger, Sue; Rule, John; Holland, Thomas L; Kitonsa, Jonathan; Delph, Yvette
  3. Journal of Clinical and Translational Science. 2024, Oct 15; 8(1): e157.
  1. 16.   Translation of HIV-1 unspliced RNA is regulated by 5' untranslated region structure
  2. Cheng,Zetao; Islam,Mohammad Saiful; Kanlong, Joseph G; Sheppard, Madeline; Seo, Heewon; Nikolaitchik,Olga; Kearse, Michael G; Pathak,Vinay; Musier-Forsyth, Karin; Hu,Wei-Shau
  3. Journal of Virology. 2024, Sep 24; e0116024.
  1. 17.   Immunological properties of silica nanoparticles: a structure-activity relationship study
  2. Grunberger, Jason William; Dobrovolskaia,Marina; Ghandehari, Hamidreza
  3. Nanotoxicology. 2024, Sep 16; 1-23.
  1. 18.   Autophagy Deregulation in HIV-1-Infected Cells Increases Extracellular Vesicle Release and Contributes to TLR3 Activation
  2. DeMarino, Catherine; Cowen, Maria; Williams, Anastasia; Khatkar, Pooja; Abulwerdi, Fardokht A; Henderson, Lisa; Denniss, Julia; Pleet, Michelle L; Luttrell, Delores R; Vaisman, Iosif; Liotta, Lance A; Steiner, Joseph; Le Grice, Stuart F J; Nath, Avindra; Kashanchi, Fatah
  3. Viruses. 2024, Apr 20; 16(4):
  1. 19.   Kinetically Controlled Polyelectrolyte Complex Assembly of microRNA-Peptide Nanoparticles toward Treating Mesothelioma
  2. Anderson,Caleb; Singh, Anand; Stephens,Tyler; Hoang, Chuong D; Schneider,Joel
  3. Advanced Materials (Deerfield Beach, Fla.). 2024, Mar 26; e2314367.
  1. 20.   Carrier-Free, Amorphous Verteporfin Nanodrug for Enhanced Photodynamic Cancer Therapy and Brain Drug Delivery
  2. Quinlan, John A; Inglut, Collin T; Srivastava, Payal; Rahman, Idrisa; Stabile, Jillian; Gaitan, Brandon; Arnau Del Valle, Carla; Baumiller, Kaylin; Gaur, Anandita; Chiou, Wen-An; Karim,Baktiar; Connolly, Nina; Robey, Robert W; Woodworth, Graeme F; Gottesman, Michael M; Huang, Huang-Chiao
  3. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2024, Mar 06; e2302872.
  1. 21.   Mosaic quadrivalent influenza vaccine single nanoparticle characterization
  2. Yang, Rong Sylvie; Traver, Maria; Barefoot, Nathan; Stephens, Tyler; Alabanza, Casper; Manzella-Lapeira, Javier; Zou, Guozhang; Wolff, Jeremy; Li, Yile; Resto, Melissa; Shadrick, William; Yang, Yanhong; Ivleva, Vera B; Tsybovsky,Yaroslav; Carlton, Kevin; Brzostowski, Joseph; Gall, Jason G; Lei, Q Paula
  3. Scientific Reports. 2024, Feb 24; 14(1): 4534.
  1. 22.   Immunostimulation of Fibrous Nucleic Acid Nanoparticles Can be Modulated through Aptamer-Based Functional Moieties: Unveiling the Structure-Activity Relationship and Mechanistic Insights
  2. Rebolledo, Laura P; Ke, Weina; Cedrone,Edward; Wang, Jian; Majithia, Krishna; Johnson, M Brittany; Dokholyan, Nikolay V; Dobrovolskaia,Marina; Afonin, Kirill A
  3. ACS Applied Materials & Interfaces. 2024, Feb 12;
  1. 23.   Radiation cataract in Heterogeneous Stock mice after gamma-ray or HZE ion exposure
  2. Kleiman, Norman J; Edmondson,Elijah; Weil, Michael M; Fallgren, Christina M; King, Adam; Schmidt, Catherine; Hall, Eric J
  3. Life Sciences in Space Research. 2024, Feb; 40: 97-105.
  1. 24.   Quantitation of Active Pharmaceutical Ingredients in Polymeric Drug Products Using Elemental Analysis
  2. Xu,Jie; Hu, Yingwen; Clogston,Jeffrey
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2789: 35-43.
  1. 25.   Analysis of Nanoparticles' Potential to Induce Autoimmunity
  2. Neun,Barry; Potter,Tim; Robinson,Christina; Difilippantonio,Simone; Edmondson,Elijah; Dobrovolskaia,Marina
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2789: 121-127.
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