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  1. 1.   Modulating the immunodominance hierarchy of immunoglobulin germline-encoded structural motifs targeting the influenza hemagglutinin stem
  2. Ataca, Sila; Sangesland, Maya; de Paiva Fróes Rocha, Rebeca; Torrents de la Peña, Alba; Ronsard, Larance; Boyoglu-Barnum, Seyhan; Gillespie, Rebecca A; Tsybovsky,Yaroslav; Stephens,Tyler; Moin, Syed M; Lederhofer, Julia; Creanga, Adrian; Andrews, Sarah F; Barnes, Ralston M; Rohrer, Daniel; Lonberg, Nils; Graham, Barney S; Ward, Andrew B; Lingwood, Daniel; Kanekiyo, Masaru
  3. Cell Reports. 2024, Nov 22; 43(12): 114990.
  1. 2.   Potent and broad HIV-1 neutralization in fusion peptide-primed SHIV-infected macaques
  2. Wang, Hua; Cheng, Cheng; Dal Santo, James L; Shen, Chen-Hsiang; Bylund, Tatsiana; Henry, Amy R; Howe, Colin A; Hwang, Juyun; Morano, Nicholas C; Morris, Daniel J; Pletnev, Sergei; Roark, Ryan S; Zhou, Tongqing; Hansen, Bryan T; Hoyt, Forrest H; Johnston, Timothy S; Wang, Shuyi; Zhang, Baoshan; Ambrozak, David R; Becker, Jordan E; Bender, Michael F; Changela, Anita; Chaudhary, Ridhi; Corcoran, Martin; Corrigan, Angela R; Foulds, Kathryn E; Guo, Yicheng; Lee, Myungjin; Li, Yingying; Lin, Bob C; Liu, Tracy; Louder, Mark K; Mandolesi, Marco; Mason, Rosemarie D; McKee, Krisha; Nair, Vinod; O'Dell, Sijy; Olia, Adam S; Ou, Li; Pegu, Amarendra; Raju, Nagarajan; Rawi, Reda; Roberts-Torres, Jesmine; Sarfo, Edward K; Sastry, Mallika; Schaub, Andrew J; Schmidt, Stephen D; Schramm, Chaim A; Schwartz, Cindi L; Smith, Sarah C; Stephens,Tyler; Stuckey, Jonathan; Teng, I-Ting; Todd, John-Paul; Tsybovsky,Yaroslav; Van Wazer, David J; Wang, Shuishu; Doria-Rose, Nicole A; Fischer, Elizabeth R; Georgiev, Ivelin S; Karlsson Hedestam, Gunilla B; Sheng, Zizhang; Woodward, Ruth A; Douek, Daniel C; Koup, Richard A; Pierson, Theodore C; Shapiro, Lawrence; Shaw, George M; Mascola, John R; Kwong, Peter D
  3. Cell. 2024, Oct 23;
  1. 3.   Ultrapotent Broadly Neutralizing Human-llama Bispecific Antibodies against HIV-1
  2. Xu, Jianliang; Zhou, Tongqing; McKee, Krisha; Zhang, Baoshan; Liu, Cuiping; Nazzari, Alexandra F; Pegu, Amarendra; Shen, Chen-Hsiang; Becker, Jordan E; Bender, Michael F; Chan, Payton; Changela, Anita; Chaudhary, Ridhi; Chen, Xuejun; Einav, Tal; Kwon, Young Do; Lin, Bob C; Louder, Mark K; Merriam, Jonah S; Morano, Nicholas C; O'Dell, Sijy; Olia, Adam S; Rawi, Reda; Roark, Ryan S; Stephens,Tyler; Teng, I-Ting; Tourtellott-Fogt, Emily; Wang, Shuishu; Yang, Eun Sung; Shapiro, Lawrence; Tsybovsky,Yaroslav; Doria-Rose, Nicole A; Casellas, Rafael; Kwong, Peter D
  3. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2024, May 05; e2309268.
  1. 4.   Effects of Xylanase A double mutation on substrate specificity and structural dynamics
  2. MacDonald, Meagan E; Wells, Nicholas G M; Hassan,Bakar; Dudley, Joshua A; Walters,Kylie; Korzhnev, Dmitry M; Aramini, James M; Smith, Colin A
  3. Journal of Structural Biology. 2024, Mar 02; 108082.
  1. 5.   Vaccine elicitation and structural basis for antibody protection against alphaviruses
  2. Sutton, Matthew S; Pletnev, Sergei; Callahan, Victoria; Ko, Sungyoul; Tsybovsky,Yaroslav; Bylund, Tatsiana; Casner, Ryan G; Cerutti, Gabriele; Gardner, Christina L; Guirguis, Veronica; Verardi, Raffaello; Zhang, Baoshan; Ambrozak, David; Beddall, Margaret; Lei, Hong; Yang, Eun Sung; Liu, Tracy; Henry, Amy R; Rawi, Reda; Schön, Arne; Schramm, Chaim A; Shen, Chen-Hsiang; Shi, Wei; Stephens,Tyler; Yang, Yongping; Florez, Maria Burgos; Ledgerwood, Julie E; Burke, Crystal W; Shapiro, Lawrence; Fox, Julie M; Kwong, Peter D; Roederer, Mario
  3. Cell. 2023, Jun 08; 186(12): 2672-2689.e25.
  1. 6.   Vaccine-elicited murine antibody WS6 neutralizes diverse beta-coronaviruses by recognizing a helical stem supersite of vulnerability
  2. Shi, Wei; Wang, Lingshu; Zhou, Tongqing; Sastry, Mallika; Yang, Eun Sung; Zhang, Yi; Chen, Man; Chen, Xuejun; Choe, Misook; Creanga, Adrian; Leung, Kwan; Olia, Adam S; Pegu, Amarendra; Rawi, Reda; Schön, Arne; Shen, Chen-Hsiang; Stancofski, Erik-Stephane D; Talana, Chloe Adrienna; Teng, I-Ting; Wang, Shuishu; Corbett, Kizzmekia S; Tsybovsky,Yaroslav; Mascola, John R; Kwong, Peter D
  3. Structure (London, England : 1993). 2022, Jul 12; 30(9): 1233–1244.
  1. 7.   Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2
  2. Gao, Nan; Gai, Yanxin; Meng, Lina; Wang, Chu; Wang, Wei; Li, Xiaojun; Gu, Tiejun; Louder, Mark K; Doria-Rose, Nicole A; Wiehe, Kevin; Nazzari, Alexandra F; Olia, Adam S; Gorman, Jason; Rawi, Reda; Wu, Wenmin; Smith, Clayton; Khant, Htet; de Val, Natalia; Yu, Bin; Luo, Junhong; Niu, Haitao; Tsybovsky, Yaroslav; Liao, Huaxin; Kepler, Thomas B; Kwong, Peter D; Mascola, John R; Qin, Chuan; Zhou, Tongqing; Yu, Xianghui; Gao, Feng
  3. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2022, Mar 23; e2200063.
  1. 8.   Engineering well-expressed, V2-immunofocusing HIV-1 envelope glycoprotein membrane trimers for use in heterologous prime-boost vaccine regimens
  2. Crooks, Emma T.; Almanza, Francisco; D'Addabbo, Alessio; Duggan, Erika; Zhang, Jinsong; Wagh, Kshitij; Mou, Huihui; Allen, Joel D.; Thomas, Alyssa; Osawa, Keiko; Korber, Bette T.; Tsybovsky,Yaroslav; Cale, Evan; Nolan, John; Crispin, Max; Verkoczy, Laurent K.; Binley, James M.
  3. PLoS Pathogens. 2021, Oct; 17(10):
  1. 9.   Stable Latent HIV Infection and Low-Level Viremia Despite Treatment with the Broadly Neutralizing Antibody VRC07-523LS and the Latency Reversal Agent Vorinostat
  2. Gay, C L; James, K S; Tuyishime, M; Falcinelli, S D; Joseph, S B; Moeser, M J; Allard, B; Kirchherr, J L; Clohosey, M; Raines, S L M; Montefiori, D C; Shen, X; Gorelick,Robert; Gama, L; McDermott, A B; Koup, R A; Mascola, J R; Floris-Moore, M; Kuruc, J D; Ferrari, G; Eron, J J; Archin, N M; Margolis, D M
  3. The Journal of Infectious Diseases. 2021, Sep 25;
  1. 10.   Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates
  2. Cai, Fangping; Chen, Wei-Hung; Wu,Weimin; Jones, Julia A.; Choe, Misook; Gohain, Neelakshi; Shen, Xiaoying; LaBranche, Celia; Eaton, Amanda; Sutherland, Laura; Lee, Esther M.; Hernandez, Giovanna E.; Wu, Nelson R.; Scearce, Richard; Seaman, Michael S.; Moody, M. Anthony; Santra, Sampa; Wiehe, Kevin; Tomaras, Georgia D.; Wagh, Kshitij; Korber, Bette; Bonsignori, Mattia; Montefiori, David C.; Haynes, Barton F.; de Val, Natalia; Joyce, M. Gordon; Saunders, Kevin O.
  3. PLOS PATHOGENS. 2021, Jun; 17(6):
  1. 11.   Characteristics of HIV-1 env genes from Chinese chronically infected donors with highly broad cross-neutralizing activity
  2. Sha, Sun Sha; Dai, Zhang; Wei, Qi Zhong; Hu,Xintao; Yuan, Hu Yuan; Li, Ren; Ying, Liu; Li Ying, Ma; Ming, Shao Yi; Xue, Hong Kun
  3. Virology. 2020, DEC; 551: 16-25.
  1. 12.   Networks of HIV-1 Envelope Glycans Maintain Antibody Epitopes in the Face of Glycan Additions and Deletions
  2. Seabright, Gemma E; Cottrell, Christopher A; van Gils, Marit J; D'addabbo, Alessio; Harvey, David J; Behrens, Anna-Janina; Allen, Joel D; Watanabe, Yasunori; Scaringi, Nicole; Polveroni, Thomas M; Maker, Allison; Vasiljevic, Snezana; De Val Alda,Natalia; Sanders, Rogier W; Ward, Andrew B; Crispin, Max
  3. Structure (London, England : 1993). 2020, AUG 4; 28(8): 897-+.
  1. 13.   Immune Monitoring Reveals Fusion Peptide Priming to Imprint Cross-Clade HIV-Neutralizing Responses with a Characteristic Early B Cell Signature
  2. Cheng, Cheng; Duan, Hongying; Xu, Kai; Chuang, Gwo-Yu; Corrigan, Angela R; Geng, Hui; O'Dell, Sijy; Ou, Li; Chambers, Michael; Changela, Anita; Chen, Xuejun; Foulds, Kathryn E; Sarfo, Edward K; Jafari, Alexander J; Hill, Kurt R; Kong, Rui; Liu, Kevin; Todd, John P; Tsybovsky,Yaroslav; Verardi, Raffaello; Wang, Shuishu; Wang, Yiran; Wu, Winston; Zhou, Tongqing; Arnold, Frank J; Doria-Rose, Nicole A; Koup, Richard A; McDermott, Adrian B; Scorpio, Diana G; Worobey, Michael; Shapiro, Lawrence; Mascola, John R; Kwong, Peter D
  3. Cell reports. 2020, Aug 04; 32(5): 107981.
  1. 14.   Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
  2. Ueda, George; Antanasijevic, Aleksandar; Fallas, Jorge A; Sheffler, William; Copps, Jeffrey; Ellis, Daniel; Hutchinson, Geoffrey B; Moyer, Adam; Yasmeen, Anila; Tsybovsky,Yaroslav; Park, Young-Jun; Bick, Matthew J; Sankaran, Banumathi; Gillespie, Rebecca A; Brouwer, Philip Jm; Zwart, Peter H; Veesler, David; Kanekiyo, Masaru; Graham, Barney S; Sanders, Rogier W; Moore, John P; Klasse, Per Johan; Ward, Andrew B; King, Neil P; Baker, David
  3. eLife. 2020, Aug 04; 9: pii: 9:e57659.
  1. 15.   Long-Term Delivery of an Anti-SIV Monoclonal Antibody With AAV
  2. Martinez-Navio, José M; Fuchs, Sebastian P; Mendes, Desiree E; Rakasz, Eva G; Gao, Guangping; Lifson,Jeffrey; Desrosiers, Ronald C
  3. Frontiers in immunology. 2020, MAR 17; 11: 449.
  1. 16.   Induction of Transient Virus Replication Facilitates Antigen-Independent Isolation of SIV-Specific Monoclonal Antibodies
  2. Pedreno-Lopez, Nuria; Dang, Christine M.; Rosen, Brandon C.; Ricciardi, Michael J.; Bailey, Varian K.; Gutman, Martin J.; Gonzalez-Nieto, Lucas; Pauthner, Matthias G.; Song, Ge; Andrabi, Raiees; Weisgrau, Kim L.; Pomplun, Nicholas; Martinez-Navio, Jose M.; Fuchs, Sebastian P.; Wrammert, Jens; Rakasz, Eva G.; Lifson,Jeffrey; Martins, Mauricio A.; Burton, Dennis R.; Watkins, David; Magnani, Diogo M.
  3. Molecular therapy. Methods & clinical development. 2020, Mar 13; 16: 225-237.
  1. 17.   Adeno-associated viral vector mediated expression of broadly-neutralizing antibodies against HIV - hitting a fast-moving target
  2. Sherpa,Chringma; Le Grice,Stuart
  3. Current HIV research. 2020, Feb 10; 18(2): 114-131.
  1. 18.   Isolation and Structure of an Antibody that Fully Neutralizes Isolate SIVmac239 Reveals Functional Similarity of SIV and HIV Glycan Shields
  2. Gorman, Jason; Mason, Rosemarie D; Nettey, Leonard; Cavett, Nicole; Chuang, Gwo-Yu; Peng, Dongjun; Tsybovsky,Yaroslav; Verardi, Raffaello; Nguyen, Richard; Ambrozak, David; Biris, Kristin; LaBranche, Celia C; Ramesh, Akshaya; Schramm, Chaim A; Zhou, Jing; Bailer, Robert T; Kepler, Thomas B; Montefiori, David C; Shapiro, Lawrence; Douek, Daniel C; Mascola, John R; Roederer, Mario; Kwong, Peter D
  3. Immunity. 2019, OCT 15; 51(4): 724-+.
  1. 19.   Rapid elimination of broadly neutralizing antibodies correlates with treatment failure in the acute phase of SHIV infection
  2. Wu, Yanling; Xue, Jing; Wang, Chunyu; Li, Wei; Wang, Lili; Chen, Weizao; Prabakaran, Ponraj; Kong, Desheng; Jin, Yujia; Hu, Dan; Wang, Yulu; Lei, Cheng; Yu, Diao; Tu, Chao; Bardhi, Ariola; Sidorov, Igor; Ma, Liying; Goldstein, Harris; Qin, Chuan; Lu, Lu; Jiang, Shibo; Dimitrov, Dimiter S; Ying, Tianlei
  3. Journal of virology. 2019, OCT; 93(20): pii: JVI.01077-19. .
  1. 20.   Adeno-Associated Virus Delivery of Anti-HIV Monoclonal Antibodies Can Drive Long-Term Virologic Suppression
  2. Martinez-Navio, José M; Fuchs, Sebastian P; Pantry, Shara N; Lauer, William A; Duggan, Natasha N; Keele, Brandon; Rakasz, Eva G; Gao, Guangping; Lifson, Jeffrey; Desrosiers, Ronald C
  3. Immunity. 2019, Mar 19; 50(3): 567-+.
  1. 21.   Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual
  2. Krebs, Shelly J.; Kwon, Young D.; Schramm, Chaim A.; Law, William H.; Donofrio, Gina; Zhou, Kenneth H.; Gift, Syna; Dussupt, Vincent; Georgiev, Ivelin S.; Schatzle, Sebastian; McDaniel, Jonathan R.; Lai, Yen-Ting; Sastry, Mallika; Zhang, Baoshan; Jarosinski, Marissa C.; Ransier, Amy; Chenine, Agnes L.; Asokan, Mangaiarkarasi; Bailer, Robert T.; Bose, Meera; Cagigi, Alberto; Cale, Evan M.; Chuang, Gwo-Yu; Darko, Samuel; Driscoll, Jefferson; Druz, Aliaksandr; Gorman, Jason; Laboune, Farida; Louder, Mark K.; McKee, Krisha; Mendez, Letzibeth; Moody, M. Anthony; O'Sullivan, Anne Marie; Owen, Christopher; Peng, Dongjun; Rawi, Reda; Sanders-Buell, Eric; Shen, Chen-Hsiang; Shiakolas, Andrea R.; Stephens,Tyler; Tsybovsky,Yaroslav; Tucker, Courtney; Verardi, Raffaello; Wang, Keyun; Zhou, Jing; Zhou, Tongqing; Georgiou, George; Alam, S. Munir; Haynes, Barton F.; Rolland, Morgane; Matyas, Gary R.; Polonis, Victoria R.; McDermott, Adrian B.; Douek, Daniel C.; Shapiro, Lawrence; Tovanabutra, Sodsai; Michael, Nelson L.; Mascola, John R.; Robb, Merlin L.; Kwong, Peter D.; Doria-Rose, Nicole A.
  3. IMMUNITY. 2019, MAR 19; 50(3): 677-+.
  1. 22.   A Neutralizing Antibody Recognizing Primarily N-Linked Glycan Targets the Silent Face of the HIV Envelope
  2. Zhou, Tongqing; Zheng, Anqi; Baxa, Ulrich; Chuang, Gwo-Yu; Georgiev, Ivelin S; Kong, Rui; O'Dell, Sijy; Shahzad-Ul-Hussan, Syed; Shen, Chen-Hsiang; Tsybovsky, Yaroslav; Bailer, Robert T; Gift, Syna K; Louder, Mark K; McKee, Krisha; Rawi, Reda; Stevenson, Catherine H; Stewart-Jones, Guillaume B E; Taft, Justin D; Waltari, Eric; Yang, Yongping; Zhang, Baoshan; Shivatare, Sachin S; Shivatare, Vidya S; Lee, Chang-Chun D; Wu, Chung-Yi; Mullikin, James C; Bewley, Carole A; Burton, Dennis R; Polonis, Victoria R; Shapiro, Lawrence; Wong, Chi-Huey; Mascola, John R; Kwong, Peter D; Wu, Xueling
  3. Immunity. 2018, Mar 20; 48(3): 500-513.e6.
  1. 23.   Antimicrobial Protegrin-1 Forms Amyloid-Like Fibrils with Rapid Kinetics Suggesting a Functional Link
  2. Jang, H. J. H.; Arce, F. T.; Mustata, M.; Ramachandran, S.; Capone, R.; Nussinov, R.; Lal, R.
  3. Biophysical Journal. 2011, Apr; 100(7): 1775-1783.
  1. 24.   Anti-HIV-1 antibodies 2F5 and 4E10 interact differently with lipids to bind their epitopes
  2. Franquelim, H. G.; Chiantia, S.; Veiga, A. S.; Santos, N. C.; Schwille, P.; Castanho, M.
  3. Aids. 2011, Feb; 25(4): 419-428.
  1. 25.   Nature, Position, and Frequency of Mutations Made in a Single Cycle of HIV-1 Replication
  2. Abram, M. E.; Ferris, A. L.; Shao, W.; Alvord, W. G.; Hughes, S. H.
  3. Journal of Virology. 2010, Oct; 84(19): 9864-9878.
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