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  1. 1.   Multi-objective latent space optimization of generative molecular design models
  2. Abeer, A N M Nafiz; Urban, Nathan M; Weil,Michael; Alexander, Francis J; Yoon, Byung-Jun
  3. Patterns (New York, N.Y.). 2024, Oct 11; 5(10): 101042.
  1. 2.   Tumor-associated macrophages trigger MAIT cell dysfunction at the HCC invasive margin
  2. Ruf, Benjamin; Bruhns, Matthias; Babaei, Sepideh; Kedei, Noemi; Ma, Lichun; Revsine, Mahler; Benmebarek, Mohamed-Reda; Ma, Chi; Heinrich, Bernd; Subramanyam, Varun; Qi, Jonathan; Wabitsch, Simon; Green, Benjamin L; Bauer, Kylynda C; Myojin, Yuta; Greten, Layla T; McCallen, Justin D; Huang, Patrick; Trehan, Rajiv; Wang, Xin; Nur, Amran; Murphy Soika, Dana Qiang; Pouzolles, Marie; Evans, Christine N; Chari,Raj; Kleiner, David E; Telford, William; Dadkhah, Kimia; Ruchinskas, Allison; Stovroff, Merrill K; Kang, Jiman; Oza, Kesha; Ruchirawat, Mathuros; Kroemer, Alexander; Wang, Xin Wei; Claassen, Manfred; Korangy, Firouzeh; Greten, Tim F
  3. Cell. 2023, Aug 17; 186(17): 3686-3705.e32.
  1. 3.   Exploration of Ultralarge Compound Collections for Drug Discovery
  2. Warr, Wendy A; Nicklaus,Marc; Nicolaou, Christos A; Rarey, Matthias
  3. Journal of Chemical Information and Modeling. 2022, Apr 14;
  1. 4.   ReactionCode: format for reaction searching, analysis, classification, transform, and encoding/decoding
  2. Delannee,Victorien; Nicklaus,Marc
  3. Journal of cheminformatics. 2020, Dec 03; 12(1): 72.
  1. 5.   Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape
  2. Immonen,Taina; Camus, Celine; Reid, Carolyn; Fennessey,Christine; Del Prete,Greg; Davenport, Miles P; Lifson,Jeffrey; Keele,Brandon
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, Jan 7; 117(1): 494-502.
  1. 6.   NRARP displays either pro- or anti-tumoral roles in T-cell acute lymphoblastic leukemia depending on Notch and Wnt signaling
  2. Pinto, Inês; Duque, Mafalda; Gonçalves, Joana; Akkapeddi, Padma; Oliveira, Mariana L; Cabrita, Rita; Yunes, J Andrés; Durum,Scott; Barata, João T; Fragoso, Rita
  3. ONCOGENE. 2020, JAN; 39(5): 975-986.
  1. 7.   Centriole Remodeling during Spermiogenesis in Drosophila
  2. Khire, Atul; Jo, Kyoung H.; Kong, Dong; Akhshi, Tara; Blachon, Stephanie; Cekic, Anthony R.; Hynek, Sarah; Ha, Andrew; Loncarek, Jadranka; Mennella, Vito; Avidor-Reiss, Tomer
  3. CURRENT BIOLOGY. 2016, Dec 5; 26(23): 3183-3189.
  1. 8.   Integrating the intrinsic conformational preferences of noncoded alpha-amino acids modified at the peptide bond into the Noncoded Amino acids Database
  2. Revilla-Lopez, G.; Rodriguez-Ropero, F.; Curco, D.; Torras, J.; Calaza, M. I.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.
  3. Proteins-Structure Function and Bioinformatics. 2011, Jun; 79(6): 1841-1852.
  1. 9.   A set of aspartyl protease-deficient strains for improved expression of heterologous proteins in Kluyveromyces lactis
  2. Ganatra, M. B.; Vainauskas, S.; Hong, J. M.; Taylor, T. E.; Denson, J. P. M.; Esposito, D.; Read, J. D.; Schmeisser, H.; Zoon, K. C.; Hartley, J. L.; Taron, C. H.
  3. Fems Yeast Research. 2011, Mar; 11(2): 168-178.
  1. 10.   Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome
  2. Gherghe, C.; Lombo, T.; Leonard, C. W.; Datta, S. A. K.; Bess, J. W.; Gorelick, R. J.; Rein, A.; Weeks, K. M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2010, Nov; 107(45): 19248-19253.
  1. 11.   Kaposi Sarcoma (KS)-Associated Herpesvirus MicroRNA Sequence Analysis and KS Risk in a European AIDS-KS Case Control Study
  2. Marshall, V.; Martro, E.; Labo, N.; Ray, A.; Wang, D. A.; Mbisa, G.; Bagni, R. K.; Volfovsky, N.; Casabona, J.; Whitby, D.; Grp, E.-S. S.
  3. Journal of Infectious Diseases. 2010, Oct 1; 202(7): 1126-1135.
  1. 12.   Molecular Cloning and Characterization of the Human ErbB4 Gene: Identification of Novel Splice Isoforms in the Developing and Adult Brain
  2. Tan, W.; Dean, M.; Law, A. J.
  3. Plos One. 2010, Sep; 5(9): 8.
  1. 13.   Isolation, Structural Elucidation, and Absolute Stereochemistry of Enigmazole A, a Cytotoxic Phosphomacrolide from the Papua New Guinea Marine Sponge Cinachyrella enigmatica
  2. Oku, N.; Takada, K.; Fuller, R. W.; Wilson, J. A.; Peach, M. L.; Pannell, L. K.; McMahon, J. B.; Gustafson, K. R.
  3. Journal of the American Chemical Society. 2010, Aug; 132(30): 10278-10285.
  1. 14.   JAK-STAT Is Restrained by Notch to Control Cell Proliferation of the Drosophila Intestinal Stem Cells
  2. Liu, W.; Singh, S. R.; Hou, S. X.
  3. Journal of Cellular Biochemistry. 2010, Apr; 109(5): 992-999.
  1. 15.   Global Genomic and Proteomic Analysis Identifies Biological Pathways Related to High-Risk Neuroblastoma
  2. Chen, Q. R.; Song, Y. K.; Yu, L. R.; Wei, J. S.; Chung, J. Y.; Hewitt, S. M.; Veenstra, T. D.; Khan, J.
  3. Journal of Proteome Research. 2010, Jan; 9(1): 373-382.
  1. 16.   HTLV-1 uses HSPG and neuropilin-1 for entry by molecular mimicry of VEGF(165)
  2. Lambert, S.; Bouttier, M.; Vassy, R.; Seigneuret, M.; Petrow-Sadowski, C.; Janvier, S.; Heveker, N.; Ruscetti, F. W.; Perret, G.; Jones, K. S.; Pique, C.
  3. Blood. 2009 113(21): 5176-5185.
  1. 17.   Searching for targets of viral microRNAs
  2. Whitby, D.
  3. Nature Genetics. 2009 41(1): 7-8.
  1. 18.   Vinylogous Ureas as a Novel Class of Inhibitors of Reverse Transcriptase-Associated Ribonuclease H Activity
  2. Wendeler, M.; Lee, H. F.; Bermingham, A.; Miller, J. T.; Chertov, O.; Bona, M. K.; Baichoo, N. S.; Ehteshami, M.; Beutler, J.; O'Keefe, B. R.; Gotte, M.; Kvaratskhelia, M.; Le Grice, S.
  3. Acs Chemical Biology. 2008 3(10): 635-644.
  1. 19.   Proteomic analysis of protein expression changes in a model of gliomagenesis
  2. McBee, J. K.; Yu, L. R.; Kinoshita, Y.; Uo, T.; Beyer, R. P.; Veenstra, T. D.; Morrison, R. S.
  3. Proteomics Clinical Applications. 2007, Nov; 1(11): 1485-1498.
  1. 20.   Caspase-dependent cleavage disrupts the ERK cascade scaffolding function of KSR1
  2. McKay, M. M.; Morrison, D. K.
  3. Journal of Biological Chemistry. 2007, Sep; 282(36): 26225-26234.
  1. 21.   Proteomic profiling of differentiating osteoblasts
  2. Blonder, J.; Xiao, Z.; Veenstra, T. D.
  3. Expert Review of Proteomics. 2006, Oct; 3(5): 483-496.
  1. 22.   The Drosophila homolog of the human tumor suppressor gene BHD interacts with the JAK-STAT and Dpp signaling pathways in regulating male germline stem cell maintenance
  2. Singh, S. R.; Zhen, W.; Zheng, Z.; Wang, H.; Oh, S. W.; Liu, W.; Zbar, B.; Schmidt, L. S.; Hou, S. X.
  3. Oncogene. 2006, Sep; 25(44): 5933-5941.
  1. 23.   Parallel analysis of transcript and translation profiles: Identification of metastasis-related signal pathways differentially regulated by drug and genetic modifications
  2. Yang, H. Y.; Yu, L. R.; Yi, M.; Lucas, D. A.; Lukes, L.; Lancaster, M.; Chan, K. C.; Issaq, H. J.; Stephens, R. M.; Conrads, T. P.; Veenstra, T. D.; Hunter, K. W.
  3. Journal of Proteome Research. 2006, Jul; 5(7): 1555-1567.
  1. 24.   The use of phage-displayed peptide libraries to develop tumor-targeting drugs
  2. Krumpe, L. R. H.; Mori, T.
  3. International Journal of Peptide Research and Therapeutics. 2006, Mar; 12(1): 79-91.
  1. 25.   Paths of lateral gene transfer of lysyl-aminoacyl-tRNA synthetases with a unique evolutionary transition stage of prokaryotes coding for class I and II varieties by the same organisms
  2. Shaul, S.; Nussinov, R.; Pupko, T.
  3. Bmc Evolutionary Biology. 2006, Mar; 6
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