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  1. 1.   Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Xia, Fangfang; Shukla, Maulik; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Briefings in Bioinformatics. 2025, Mar 04; 26(2):
  1. 2.   A Mixed Methods Study of Medication Adherence in Adults with Neurofibromatosis Type 1 (NF1) on a Clinical Trial of Selumetinib
  2. Curlee, Millicent S; Toledo-Tamula, Mary Anne; Baker, Melissa; Wikstrom, Daniel; Harrison, Cynthia; Rhodes, Amanda; Fagan, Margaret; Tibery,Cecilia; Wolters, Pamela L; Widemann, Brigitte C; Gross, Andrea M; Martin, Staci
  3. Cancers. 2025, Jan 17; 17(2):
  1. 3.   MoMo30 Binds to SARS-CoV-2 Spike Variants and Blocks Infection by SARS-CoV-2 Pseudovirus
  2. DeBarros, Kenya; Khan, Mahfuz; Coleman, Morgan; Bond, Vincent C; Floyd, Virginia; Gbodossou, Erick; Diop, Amad; Krumpe,Lauren; O'Keefe,Barry; Powell, Michael D
  3. Viruses. 2024, Sep 07; 16(9):
  1. 4.   PKR activation-induced mitochondrial dysfunction in HIV-transgenic mice with nephropathy
  2. Yoshida, Teruhiko; Latt, Khun Zaw; Rosenberg, Avi Z; Santo, Briana A; Myakala, Komuraiah; Ishimoto,Yu; Zhao, Yongmei; Shrivastav, Shashi; Jones, Bryce A; Yang, Xiaoping; Wang, Xiaoxin X; Tutino, Vincent M; Sarder, Pinaki; Levi, Moshe; Okamoto, Koji; Winkler, Cheryl A; Kopp, Jeffrey B
  3. eLife. 2024, Aug 29; 12
  1. 5.   Autonomous System for Tumor Resection (ASTR) - Dual-Arm Robotic Midline Partial Glossectomy
  2. Ge, Jiawei; Kam, Michael; Opfermann, Justin D; Saeidi, Hamed; Leonard, Simon; Mady, Leila J; Schnermann,Martin; Krieger, Axel
  3. IEEE Robotics and Automation Letters. 2024, Feb; 9(2): 1166-1173.
  1. 6.   A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening
  2. Vasanthakumari, Priyanka; Zhu, Yitan; Brettin, Thomas; Partin, Alexander; Shukla, Maulik; Xia, Fangfang; Narykov, Oleksandr; Weil,Michael; Stevens, Rick L
  3. Cancers. 2024, Jan 26; 16(3):
  1. 7.   Long-term survivors of glioblastoma: Tumor molecular, clinical, and imaging findings
  2. Briceno, Nicole; Vera, Elizabeth; Komlodi-Pasztor, Edina; Abdullaev, Zied; Choi, Anna; Grajkowska, Ewa; Kunst, Tricia; Levine, Jason; Lindsley, Matthew; Fernandez, Kelly; Reyes, Jennifer; Boris,Lisa; Burton, Eric; Panzer, Marissa; Polskin, Lily; Penas-Prado, Marta; Pillai, Tina; Theeler, Brett J; Wu, Jing; Wall, Kathleen; Papanicolau-Sengos, Antonios; Quezado, Martha; Smirniotopoulos, James; Aldape, Kenneth; Armstrong, Terri S; Gilbert, Mark R
  3. Neuro-Oncology Advances. 2024, Jan-Dec; 6(1): vdae019.
  1. 8.   Quantitation of Active Pharmaceutical Ingredients in Polymeric Drug Products Using Elemental Analysis
  2. Xu,Jie; Hu, Yingwen; Clogston,Jeffrey
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2789: 35-43.
  1. 9.   Advancements in Nanoparticle Characterization
  2. Crist,Rachael; Clogston,Jeffrey; Stern,Steve; Dobrovolskaia,Marina
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2789: 3-17.
  1. 10.   Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Shukla, Maulik; Xia, Fangfang; Clyde, Austin; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Cancers. 2023, Dec 21; 16(1):
  1. 11.   Development of a multiassay algorithm (MAA) to identify recent HIV infection in newly diagnosed individuals in Indonesia
  2. Wulan, Wahyu Nawang; Yunihastuti, Evy; Arlinda, Dona; Merati, Tuti Parwati; Wisaksana, Rudi; Lokida, Dewi; Grossman, Zehava; Huik, Kristi; Lau,Chuen-Yen; Susanto, Nugroho Harry; Kosasih, Herman; Aman, Abu Tholib; Ang, Sunarto; Evalina, Rita; Ayu Yuli Gayatri, Anak Agung; Hayuningsih, Chakrawati; Indrati, Agnes Rengga; Kumalawati, July; Mutiawati, Vivi Keumala; Realino Nara, Mario Bernardinus; Nurulita, Asvin; Rahmawati, Rahmawati; Rusli, Adria; Rusli, Musofa; Sari, Dewi Yennita; Sembiring, Justina; Udji Sofro, Muchlis Achsan; Susanti, Wiwi Endang; Tandraeliene, Janice; Tanzil, Fransisca Lianiwati; Neal, Aaron; Karyana, Muhammad; Sudarmono, Pratiwi; Maldarelli, Frank
  3. iScience. 2023, Oct 20; 26(10): 107986.
  1. 12.   Magnetic Resonance Imaging for Monitoring of Hepatic Disease Induced by Ebola Virus: a Nonhuman Primate Proof-of-Concept Study
  2. Lee, Ji Hyun; Calcagno, Claudia; Feuerstein, Irwin M; Solomon,Jeffrey; Mani, Venkatesh; Huzella, Louis; Castro, Marcelo A; Laux, Joseph; Reeder, Rebecca J; Kim, Dong-Yun; Worwa, Gabriella; Thomasson, David; Hagen, Katie R; Ragland, Danny R; Kuhn, Jens H; Johnson, Reed F
  3. Microbiology Spectrum. 2023, May 15; e0353822.
  1. 13.   Computed Tomography Imaging for Monitoring of Marburg Virus Disease: a Nonhuman Primate Proof-Of-Concept Study
  2. Sword, Jennifer; Lee, Ji Hyun; Castro, Marcelo A; Solomon,Jeffrey; Aiosa, Nina; Reza, Syed M S; Chu, Winston T; Johnson, Joshua C; Bartos, Christopher; Cooper, Kurt; Jahrling, Peter B; Johnson, Reed F; Calcagno, Claudia; Crozier,Ian; Kuhn, Jens H; Hensley, Lisa E; Feuerstein, Irwin M; Mani, Venkatesh
  3. Microbiology Spectrum. 2023, Apr 10; e0349422.
  1. 14.   Highlights from the Tenth International Workshop on HIV Persistence during Therapy, December 13-16, 2022, Miami, Florida-USA
  2. Archin, N; Bar, K J; Burdo, T; Caskey, M; Chahroudi, A; Farzan, M; Ho, Y-C; Jones, R B; Kearney,Mary; Kuritzkes, D; Margolis, D; Martinez-Picado, J; Okoye, A; Salgado, M; Stevenson, Mario
  3. Journal of Virus Eradication. 2023, Mar; 9(1): 100315.
  1. 15.   Machine Learning Informs RNA-Binding Chemical Space
  2. Yazdani, Kamyar; Jordan, Deondre; Yang,Mo; Fullenkamp,Chris; Schneekloth,Jay; Calabrese,Dave; Boer, Robert E; Hilimire, Thomas A; Allen, Timothy E H; Khan, Rabia T
  3. Angewandte Chemie (International ed. in English). 2022, Dec 30;
  1. 16.   Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy
  2. Lian, Xiaodong; Seiger, Kyra W; Parsons, Elizabeth M; Gao, Ce; Sun, Weiwei; Gladkov, Gregory T; Roseto, Isabelle C; Einkauf, Kevin B; Osborn, Matthew R; Chevalier, Joshua M; Jiang, Chenyang; Blackmer, Jane; Carrington,Mary; Rosenberg, Eric S; Lederman, Michael M; McMahon, Deborah K; Bosch, Ronald J; Jacobson, Jeffrey M; Gandhi, Rajesh T; Peluso, Michael J; Chun, Tae-Wook; Deeks, Steven G; Yu, Xu G; Lichterfeld, Mathias
  3. Cell Host & Microbe. 2022, Dec 28; 31
  1. 17.   Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation
  2. Stahlberg,Eric; Abdel-Rahman, Mohamed; Aguilar, Boris; Asadpoure, Alireza; Beckman, Robert A; Borkon,Lynn; Bryan, Jeffrey N; Cebulla, Colleen M; Chang, Young Hwan; Chatterjee, Ansu; Deng, Jun; Dolatshahi, Sepideh; Gevaert, Olivier; Greenspan, Emily J; Hao, Wenrui; Hernandez-Boussard, Tina; Jackson, Pamela R; Kuijjer, Marieke; Lee, Adrian; Macklin, Paul; Madhavan, Subha; McCoy, Matthew D; Mohammad Mirzaei, Navid; Razzaghi, Talayeh; Rocha, Heber L; Shahriyari, Leili; Shmulevich, Ilya; Stover, Daniel G; Sun, Yi; Syeda-Mahmood, Tanveer; Wang, Jinhua; Wang, Qi; Zervantonakis, Ioannis
  3. Frontiers in Digital Health. 2022, Oct 6; 4: 1007784.
  1. 18.   The All of Us Research Program: Data quality, utility, and diversity
  2. Ramirez, Andrea H; Sulieman, Lina; Schlueter, David J; Halvorson, Alese; Qian, Jun; Ratsimbazafy, Francis; Loperena, Roxana; Mayo, Kelsey; Basford, Melissa; Deflaux, Nicole; Muthuraman, Karthik N; Natarajan, Karthik; Kho, Abel; Xu, Hua; Wilkins, Consuelo; Anton-Culver, Hoda; Boerwinkle, Eric; Cicek, Mine; Clark, Cheryl R; Cohn, Elizabeth; Ohno-Machado, Lucila; Schully, Sheri D; Ahmedani, Brian K; Argos, Maria; Cronin, Robert M; O'Donnell, Christopher; Fouad, Mona; Goldstein, David B; Greenland, Philip; Hebbring, Scott J; Karlson, Elizabeth W; Khatri, Parinda; Korf, Bruce; Smoller, Jordan W; Sodeke, Stephen; Wilbanks, John; Hentges, Justin; Mockrin,Stephen; Lunt, Christopher; Devaney, Stephanie A; Gebo, Kelly; Denny, Joshua C; Carroll, Robert J; Glazer, David; Harris, Paul A; Hripcsak, George; Philippakis, Anthony; Roden, Dan M
  3. Patterns (New York, N.Y.). 2022, Aug 12; 3(8): 100570.
  1. 19.   The Evolution of Medical Countermeasures for Ebola Virus Disease: Lessons Learned and Next Steps
  2. Crozier,Ian; Britson, Kyla A; Wolfe, Daniel N; Klena, John D; Hensley, Lisa E; Lee, John S; Wolfraim, Larry A; Taylor, Kimberly L; Higgs, Elizabeth S; Montgomery, Joel M; Martins, Karen A
  3. Vaccines. 2022, Jul 29; 10(8):
  1. 20.   Spatial meta-transcriptomics reveal associations of intratumor bacteria burden with lung cancer cells showing a distinct oncogenic signature
  2. Wong-Rolle, Abigail; Dong, Qiang; Zhu, Yunhua; Divakar, Prajan; Hor, Jyh Liang; Kedei, Noemi; Wong, Madeline; Tillo,Desiree; Conner, Elizabeth A; Rajan, Arun; Schrump, David S; Jin, Chengcheng; Germain, Ronald N; Zhao, Chen
  3. Journal for Immunotherapy of Cancer. 2022, Jul; 10(7):
  1. 21.   Stealth oxime ether lipid vesicles promote delivery of functional DsiRNA in human lung cancer A549 tumor bearing mouse xenografts
  2. Puri,Anu; Ibrahim, Faisal; O'Reilly Beringhs, André; Isemann, Camryn; Zakrevsky, Paul; Whittenburg, Abigail; Hargrove, Derek; Kanai,Tapan; Dillard, Rebecca S; de Val, Natalia; Nantz, Michael H; Lu, Xiuling; Shapiro,Bruce
  3. Nanomedicine : nanotechnology, biology, and medicine. 2022, Jun 04; 102572.
  1. 22.   BETA: a comprehensive benchmark for computational drug-target prediction
  2. Zong, Nansu; Li,Ning; Wen, Andrew; Ngo, Victoria; Yu, Yue; Huang, Ming; Chowdhury, Shaika; Jiang, Chao; Fu, Sunyang; Weinshilboum, Richard; Jiang, Guoqian; Hunter, Lawrence; Liu, Hongfang
  3. Briefings in Bioinformatics. 2022, Jun 02;
  1. 23.   Hepatitis B virus infection and factors associated with its acquisition among adults in a Lake Victoria HIV hyperendemic fishing community in Kyotera district, Uganda: a cross-sectional observation
  2. Ssuuna, Charles; Ssempijja,Victor; Kalibbala, Sarah; Serwadda, David; Yeh, Ping Teresa; Wawer, Maria; Gray, Ronald; Chang, Larry; Kagaayi, Joseph; Reynolds, Steven
  3. BMJ Open. 2022, Apr 07; 12(4): e050436.
  1. 24.   Asymmetric and non-stoichiometric glycoprotein recognition by two distinct antibodies results in broad protection against ebolaviruses
  2. Milligan, Jacob C; Davis, Carl W; Yu, Xiaoying; Ilinykh, Philipp A; Huang, Kai; Halfmann, Peter J; Cross, Robert W; Borisevich, Viktoriya; Agans, Krystle N; Geisbert, Joan B; Chennareddy, Chakravarthy; Goff, Arthur J; Piper, Ashley E; Hui, Sean; Shaffer, Kelly C L; Buck, Tierra; Heinrich, Megan L; Branco, Luis M; Crozier,Ian; Holbrook, Michael R; Kuhn, Jens H; Kawaoka, Yoshihiro; Glass, Pamela J; Bukreyev, Alexander; Geisbert, Thomas W; Worwa, Gabriella; Ahmed, Rafi; Saphire, Erica Ollmann
  3. Cell. 2022, Mar 17; 185(6): 995-1007.e18.
  1. 25.   Structural basis for Dicer-like function of an engineered RNase III variant and insights into the reaction trajectory of two-Mg2+-ion catalysis
  2. Dharavath,Sudhaker; Shaw,Gary; Ji,Xinhua
  3. RNA Biology. 2022, Jan; 19(1): 908-915.
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