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  1. 1.   Temporal analysis of mRNA expression profiles in Orientia infected C3HeB/FeJ mouse
  2. Chao, Chien-Chung; Yang, Ruoting; Zhang, Zhiwen; Belinskaya, Tatyana; Chan, Chye-Teik; Miller, Stacy-Ann; Hammamieh, Rasha; Jett, Marti; Ching, Wei-Mei
  3. BMC microbiology. 2020, Jan 06; 20(1): 3.
  1. 2.   PAX3-FOXO1 Establishes Myogenic Super Enhancers and Confers BET Bromodomain Vulnerability
  2. Gryder, Berkley E.; Yohe, Marielle E.; Chou, Hsien-Chao; Zhang, Xiaohu; Marques, Joana; Wachtel, Marco; Schaefer, Beat; Sen, Nirmalya; Song, Young; Gualtieri, Alberto; Pomella, Silvia; Rota, Rossella; Cleveland, Abigail; Wen, Xinyu; Sindiri, Sivasish; Wei, Jun S.; Barr, Frederic G.; Das, Sudipto; Andresson, Thorkell; Guha, Rajarshi; Lal-Nag, Madhu; Ferrer, Marc; Shern, Jack F.; Zhao, Keji; Thomas, Craig J.; Khan, Javed
  3. Cancer Discovery. 2017, Aug; 7(8): 884-899.
  1. 3.   Dysregulation of mitotic machinery genes precedes genome instability during spontaneous pre-malignant transformation of mouse ovarian surface epithelial cells
  2. Urzua, U.; Ampuero, S.; Roby, K. F.; Owens, G. A.; Munroe, D. J.
  3. Bmc Genomics. 2016, 25-Oct; 17(Suppl 8): 728.
  1. 4.   MiR-886-3p Regulates Cell Proliferation and Migration, and Is Dysregulated in Familial Non-Medullary Thyroid Cancer
  2. Xiong, Y.; Zhang, L.; Holloway, A. K.; Wu, X. L.; Su, L.; Kebebew, E.
  3. Plos One. 2011, Oct; 6(10): 11.
  1. 5.   The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
  2. Shi, L. M.; Campbell, G.; Jones, W. D.; Campagne, F.; Wen, Z. N.; Walker, S. J.; Su, Z. Q.; Chu, T. M.; Goodsaid, F. M.; Pusztai, L.; Shaughnessy, J. D.; Oberthuer, A.; Thomas, R. S.; Paules, R. S.; Fielden, M.; Barlogie, B.; Chen, W. J.; Du, P.; Fischer, M.; Furlanello, C.; Gallas, B. D.; Ge, X. J.; Megherbi, D. B.; Symmans, W. F.; Wang, M. D.; Zhang, J.; Bitter, H.; Brors, B.; Bushel, P. R.; Bylesjo, M.; Chen, M. J.; Cheng, J.; Chou, J.; Davison, T. S.; Delorenzi, M.; Deng, Y. P.; Devanarayan, V.; Dix, D. J.; Dopazo, J.; Dorff, K. C.; Elloumi, F.; Fan, J. Q.; Fan, S. C.; Fan, X. H.; Fang, H.; Gonzaludo, N.; Hess, K. R.; Hong, H. X.; Huan, J.; Irizarry, R. A.; Judson, R.; Juraeva, D.; Lababidi, S.; Lambert, C. G.; Li, L.; Li, Y. N.; Li, Z.; Lin, S. M.; Liu, G. Z.; Lobenhofer, E. K.; Luo, J.; Luo, W.; McCall, M. N.; Nikolsky, Y.; Pennello, G. A.; Perkins, R. G.; Philip, R.; Popovici, V.; Price, N. D.; Qian, F.; Scherer, A.; Shi, T. L.; Shi, W. W.; Sung, J.; Thierry-Mieg, D.; Thierry-Mieg, J.; Thodima, V.; Trygg, J.; Vishnuvajjala, L.; Wang, S. J.; Wu, J. P.; Wu, Y. C.; Xie, Q. A.; Yousef, W. A.; Zhang, L. A.; Zhang, X. G.; Zhong, S.; Zhou, Y. M.; Zhu, S.; Arasappan, D.; Bao, W. J.; Lucas, A. B.; Berthold, F.; Brennan, R. J.; Buness, A.; Catalano, J. G.; Chang, C.; Chen, R.; Cheng, Y. Y.; Cui, J. A.; Czika, W.; Demichelis, F.; Deng, X. T.; Dosymbekov, D.; Eils, R.; Feng, Y.; Fostel, J.; Fulmer-Smentek, S.; Fuscoe, J. C.; Gatto, L.; Ge, W. G.; Goldstein, D. R.; Guo, L.; Halbert, D. N.; Han, J.; Harris, S. C.; Hatzis, C.; Herman, D.; Huang, J. P.; Jensen, R. V.; Jiang, R.; Johnson, C. D.; Jurman, G.; Kahlert, Y.; Khuder, S. A.; Kohl, M.; Li, J. Y.; Li, M. L.; Li, Q. Z.; Li, S.; Li, Z. G.; Liu, J.; Liu, Y.; Liu, Z. C.; Meng, L.; Madera, M.; Martinez-Murillo, F.; Medina, I.; Meehan, J.; Miclaus, K.; Moffitt, R. A.; Montaner, D.; Mukherjee, P.; Mulligan, G. J.; Neville, P.; Nikolskaya, T.; Ning, B. T.; Page, G. P.; Parker, J.; Parry, R. M.; Peng, X. J.; Peterson, R. L.; Phan, J. H.; Quanz, B.; Ren, Y.; Riccadonna, S.; Roter, A. H.; Samuelson, F. W.; Schumacher, M. M.; Shambaugh, J. D.; Shi, Q. A.; Shippy, R.; Si, S. Z.; Smalter, A.; Sotiriou, C.; Soukup, M.; Staedtler, F.; Steiner, G.; Stokes, T. H.; Sun, Q. L.; Tan, P. Y.; Tang, R.; Tezak, Z.; Thorn, B.; Tsyganova, M.; Turpaz, Y.; Vega, S. C.; Visintainer, R.; von Frese, J.; Wang, C.; Wang, E.; Wang, J. W.; Wang, W.; Westermann, F.; Willey, J. C.; Woods, M.; Wu, S. J.; Xiao, N. Q.; Xu, J.; Xu, L.; Yang, L.; Zeng, X. A.; Zhang, J. L.; Zhang, L.; Zhang, M.; Zhao, C.; Puri, R. K.; Scherf, U.; Tong, W. D.; Wolfinger, R. D.; Consortium, M.
  3. Pharmacogenomics Journal. 2010, Oct; S5-S16.
  1. 6.   VIPR: A probabilistic algorithm for analysis of microbial detection microarrays
  2. Allred, A. F.; Wu, G. A.; Wulan, T.; Fischer, K. F.; Holbrook, M. R.; Tesh, R. B.; Wang, D.
  3. Bmc Bioinformatics. 2010, Jul; 11: 11.
  1. 7.   Quality Assessment of Microarray Data in a Multicenter Study
  2. Archer, K. J.; Mas, V. R.; O'Brien, T. R.; Pfeiffer, R.; Lum, N. L.; Fisher, R. A.
  3. Diagnostic Molecular Pathology. 2009 18(1): 34-43.
  1. 8.   Integrating global gene expression and radiation survival parameters across the 60 cell lines of the National Cancer Institute Anticancer Drug Screen
  2. Amundson, S. A.; Do, K. T.; Vinikoor, L. C.; Lee, R. A.; Koch-Paiz, C. A.; Ahn, J.; Reimers, M.; Chen, Y.; Scudiero, D. A.; Weinstein, J. N.; Trent, J. M.; Bittner, M. L.; Meltzer, P. S.; Fornace, A. J.
  3. Cancer Research. 2008 68(2): 415-424.
  1. 9.   A novel role of the interferon-inducible protein IFI16 as inducer of proinflammatory molecules in endothelial cells
  2. Caposio, P.; Gugliesi, F.; Zannetti, C.; Sponza, S.; Mondini, M.; Medico, E.; Hiscott, J.; Young, H. A.; Gribaudo, G.; Gariglio, M.; Landolfo, S.
  3. Journal of Biological Chemistry. 2007, Nov; 282(46):
  1. 10.   Down-regulation of insulin-like growth factor binding protein-5 (IGFBP-5): Novel marker for cervical carcinogenesis
  2. Miyatake, T.; Ueda, Y.; Nakashima, R.; Yoshino, K.; Kimura, T.; Murata, T.; Nomura, T.; Fujita, M.; Buzard, G. S.; Enomoto, T.
  3. International Journal of Cancer. 2007, May; 120(10): 2068-2077.
  1. 11.   Morphological and molecular course of mitochondrial pathology in cultured human cells exposed long-term to zidovudine
  2. Divi, R. L.; Haverkos, K. J.; Humsi, J. A.; Shockley, M. E.; Thamire, C.; Nagashima, K.; Olivero, O. A.; Poirier, M. C.
  3. Environmental and Molecular Mutagenesis. 2007, Apr-May; 48(3-4): 179-189.
  1. 12.   Quantitative assessment of RUNX3 methylation in neoplastic and non-neoplastic gastric epithelia using a DNA microarray
  2. So, K.; Tamura, G.; Honda, T.; Homma, N.; Endoh, M.; Togawa, N.; Nishizuka, S.; Motoyama, T.
  3. Pathology International. 2006, Oct; 56(10): 571-575.
  1. 13.   Identification of molecular markers for endometriosis in blood lymphocytes by using deoxyribonucleic acid microarrays
  2. Flores, I.; Rivera, E.; Mousses, S.; Chen, Y. D.; Rozenblum, E.
  3. Fertility and Sterility. 2006, Jun; 85(6): 1676-1683.
  1. 14.   Innate immune dysfunction in HIV infection: Effect of HIV envelope-NK cell interactions
  2. Kottilil, S.; Shin, K.; Jackson, J. O.; Reitano, K. N.; O'Shea, M. A.; Yang, J.; Hallahan, C. W.; Lempicki, R.; Arthos, J.; Fauci, A. S.
  3. Journal of Immunology. 2006, JAN 15; 176(2): 1107-1114.
  1. 15.   WMC-79, a potent agent against colon cancers, induces apoptosis through a p53-dependent pathway
  2. Kosakowska-Cholody, T.; Cholody, W. M.; Monks, A.; Woynarowska, B. A.; Michejda, C. J.
  3. Molecular Cancer Therapeutics. 2005, OCT; 4(10): 1617-1627.
  1. 16.   Molecular alterations in primary prostate cancer after androgen ablation therapy
  2. Best, C. J. M.; Gillespie, J. W.; Yi, Y. J.; Chandramouli, G. V. R.; Perlmutter, M. A.; Gathright, Y.; Erickson, H. S.; Georgevich, L.; Tangrea, M. A.; Duray, P. H.; Gonzalez, S.; Velasco, A.; Linehan, W. M.; Matusik, R. J.; Price, D. K.; Figg, W. D.; Emmert-Buck, M. R.; Chuaqui, R. F.
  3. Clinical Cancer Research. 2005, OCT 1; 11(19, Part 1): 6823-6834.
  1. 17.   Three microarray platforms: an analysis of their concordance in profiling gene expression
  2. Petersen, D.; Chandramouli, G. V. R.; Geoghegan, J.; Hilburn, J.; Paarlberg, J.; Kim, C. H.; Munroe, D.; Gangi, L.; Han, J.; Puri, R.; Staudt, L.; Weinstein, J.; Barrett, J. C.; Green, J.; Kawasaki, E. S.
  3. Bmc Genomics. 2005, MAY 5; 6(Art. No. 63):
  1. 18.   Expressions of hepatic genes, especially IGF-binding protein-1, correlating with serum corticosterone in microarray analysis
  2. Cheng, R. Y. S.; Birely, L. A.; Lum, N. L.; Perella, C. M.; Cherry, J. M.; Bhat, N. K.; Kasprzak, K. S.; Powell, D. A.; Alvord, W. G.; Anderson, L. M.
  3. Journal of Molecular Endocrinology. 2004 32(1): 257-278.
  1. 19.   Toxicogenomic analysis of aberrant gene expression in liver tumors and nontumorous livers of adult mice exposed in utero to inorganic arsenic
  2. Liu, J.; Xie, Y. X.; Ward, J. M.; Diwan, B. A.; Waalkes, M. P.
  3. Toxicological Sciences. 2004 77(2): 249-257.
  1. 20.   Antineoplastic agents. 499. Synthesis of hystatin 2 and related 1H-benzo[de][1,6]-naphthyridinium salts from aaptamine
  2. Pettit, G. R.; Hoffmann, H.; Herald, D. L.; Blumberg, P. M.; Hamel, E.; Schmidt, J. M.; Chang, Y.; Pettit, R. K.; Lewin, N. E.; Pearce, L. V.
  3. Journal of Medicinal Chemistry. 2004 47(7): 1775-1782.
  1. 21.   Dominant-negative c-Jun (TAM67) target genes: HMGA1 is required for tumor promoter-induced transformation
  2. Dhar, A.; Hu, J.; Reeves, R.; Resar, L. M. S.; Colburn, N. H.
  3. Oncogene. 2004 23(25): 4466-4476.
  1. 22.   Probe generation directly from small numbers of cells for DNA microarray studies
  2. Xiang, C. C.; Chen, M.; Kozhich, O. A.; Phan, Q. N.; Inman, J. M.; Chen, Y.; Brownstein, M. J.
  3. Biotechniques. 2003 34(2): 386-+.
  1. 23.   Genotoxic profiling of MCF-7 breast cancer cell line elucidates gene expression modifications underlying toxicity of the anticancer drug 2-(4-amino-3-methylphenyl)-5- fluorobenzothiazole
  2. Monks, A.; Harris, E.; Hose, C.; Connelly, J.; Sausville, E. A.
  3. Molecular Pharmacology. 2003 63(3): 766-772.
  1. 24.   Evaluation of gene expression measurements from commercial microarray platforms
  2. Tan, P. K.; Downey, T. J.; Spitznagel, E. L.; Xu, P.; Fu, D.; Dimitrov, D. S.; Lempicki, R. A.; Raaka, B. M.; Cam, M. C.
  3. Nucleic Acids Research. 2003 31(19): 5676-5684.
  1. 25.   A new strategy to amplify degraded RNA from small tissue samples for microarray studies - art. no. 53
  2. Xiang, C. C.; Chen, M.; Ma, L.; Phan, Q. N.; Inman, J. M.; Kozhich, O. A.; Brownstein, M. J.
  3. Nucleic Acids Research. 2003 31(9): art. no.-e53.
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