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  1. 1.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
  1. 2.   Revealing the mechanism of action of a first-in-class covalent inhibitor of KRASG12C (ON) and other functional properties of oncogenic KRAS by 31P NMR
  2. Sharma,Alok; Pei, Jun; Yang, Yue; Dyba,Marcin; Smith,Brian; Rabara,Dana; Larsen,Erik; Lightstone, Felice C; Esposito,Dom; Stephen,Andy; Wang, Bin; Beltran, Pedro J; Wallace, Eli; Nissley,Dwight; McCormick, Frank; Maciag,Anna
  3. The Journal of Biological Chemistry. 2024, Jan 16; 300(2): 105650.
  1. 3.   Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state
  2. Lee,Hyun Kyung; Lee,Yun-Tzai; Fan,Lixin; Wilt, Haley M; Conrad, Chelsie E; Yu,Ping; Zhang, Jinwei; Shi,Genbin; Ji,Xinhua; Wang,Yun-Xing; Stagno,Jason
  3. Structure (London, England : 1993). 2023, Jul 7; 31(7): 848-859..
  1. 4.   Small GTPase Ran: Depicting the nucleotide-specific conformational landscape of the functionally important C-terminus
  2. Czigleczki, Janka; de Resende Lara, Pedro Tulio; Dudas, Balint; Jang,Hyunbum; Perahia, David; Nussinov,Ruth; Balog, Erika
  3. Frontiers in Molecular Biosciences. 2023, Jan 16; 10: 1111574.
  1. 5.   Application of Molecular Dynamics to Expand Docking Program's Exploratory Capabilities and to Evaluate Its Predictions
  2. Kasprzak,Wojciech; Shapiro,Bruce
  3. Methods in Molecular Biology (Clifton, N.J.). 2023 2568: 75-101.
  1. 6.   HPV16 E7 Nucleotide Variants Found in Cancer-Free Subjects Affect E7 Protein Expression and Transformation
  2. Lou,Hong; Boland, Joseph F; Li,Hongchuan; Burk, Robert; Yeager, Meredith; Anderson,Steve; Wentzensen, Nicolas; Schiffman, Mark; Mirabello, Lisa; Dean, Michael
  3. Cancers. 2022, Oct 06; 14(19):
  1. 7.   Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication
  2. Olenginski, Lukasz T; Kasprzak,Wojciech; Bergonzo, Christina; Shapiro,Bruce; Dayie, Theodore K
  3. Journal of Molecular Biology. 2022, May 17; 434(18): 167633.
  1. 8.   Metabolic Profile, Biotransformation, Docking Studies and Molecular Dynamics Simulations of Bioactive Compounds Secreted by CG3 Strain
  2. Messaoudi, Omar; Sudarman, Enge; Patel,Chiragkumar; Bendahou, Mourad; Wink, Joachim
  3. Antibiotics (Basel, Switzerland). 2022, May 13; 11(5):
  1. 9.   Genetic basis for an evolutionary shift from ancestral preaxial to postaxial limb polarity in non-urodele vertebrates
  2. Trofka, Anna; Huang,Bau-Lin; Zhu,Jianjian; Heinz,Will; Magidson,Valentin; Shibata, Yuki; Shi, Yun-Bo; Tarchini, Basile; Stadler, H Scott; Kabangu, Mirindi; Al Haj Baddar, Nour W; Voss, S Randal; Mackem,Susan
  3. Current biology : CB. 2021, Nov 22; 31(22): 4923-4934.e5.
  1. 10.   Coumarin luciferins and mutant luciferases for robust multi-component bioluminescence imaging
  2. Yao, Zi; Caldwell,Donald; Love, Anna C.; Kolbaba-Kartchner, Bethany; Mills, Jeremy H.; Schnermann,Martin; Prescher, Jennifer A.
  3. CHEMICAL SCIENCE. 2021, Aug 2;
  1. 11.   The mechanism driving a solid-solid phase transition in a biomacromolecular crystal
  2. Ramakrishnan, Saminathan; Stagno,Jason; Heinz,Will; Zuo, Xiaobing; Yu,Ping; Wang,Yun-Xing
  3. IUCrJ. 2021, Jul 01; 8(Pt 4): 655-664.
  1. 12.   A non-affinity purification process for GMP production of prefusion-closed HIV-1 envelope trimers from clades A and C for clinical evaluation
  2. Gulla, Krishana; Cibelli, Nicole; Cooper, Jonathan W.; Fuller, Haley C.; Schneiderman, Zachary; Witter, Sara; Zhang, Yaqiu; Changela, Anita; Geng, Hui; Hatcher, Christian; Narpala, Sandeep; Tsybovsky,Yaroslav; Zhang, Baoshan; McDermott, Adrian B.; Kwong, Peter D.; Gowetski, Daniel B.
  3. Vaccine. 2021, Jun 8; 39(25): 3379-3387.
  1. 13.   Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection
  2. Wan, Yihan; Anastasakis, Dimitrios G.; Rodriguez, Joseph; Palangat, Murali; Gudla, Prabhakar; Zaki,George; Tandon,Mayank; Pegoraro, Gianluca; Chow, Carson C.; Hafner, Markus; Larson, Daniel R.
  3. CELL. 2021, May 27; 184(11): 2878-2895.e20.
  1. 14.   Rapid response to emerging biomedical challenges and threats
  2. Grabowski, Marek; Macnar, Joanna M; Cymborowski, Marcin; Cooper, David R; Shabalin, Ivan G; Gilski, Miroslaw; Brzezinski, Dariusz; Kowiel, Marcin; Dauter,Zbigniew; Rupp, Bernhard; Wlodawer,Alexander; Jaskolski, Mariusz; Minor, Wladek
  3. IUCrJ. 2021, May 01; 8(Pt 3): 395-407.
  1. 15.   Inhibition of Nonfunctional Ras
  2. Nussinov,Ruth; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Gaponenko, Vadim
  3. Cell Chemical Biology. 2021, Feb 18; 28(2): 121-133.
  1. 16.   The Role of Conformational Dynamics in the Recognition and Regulation of Ubiquitination
  2. Khago, Domarin; Fucci,Ian; Byrd,Robert
  3. Molecules (Basel, Switzerland). 2020, Dec 15; 25(24):
  1. 17.   Automated Design by Structure-Based Stabilization and Consensus Repair to Achieve Prefusion-Closed Envelope Trimers in a Wide Variety of HIV Strains
  2. Rawi, Reda; Rutten, Lucy; Lai, Yen-Ting; Olia, Adam S; Blokland, Sven; Juraszek, Jarek; Shen, Chen-Hsiang; Tsybovsky,Yaroslav; Verardi, Raffaello; Yang, Yongping; Zhang, Baoshan; Zhou, Tongqing; Chuang, Gwo-Yu; Kwong, Peter D; Langedijk, Johannes P M
  3. Cell reports. 2020, Nov 24; 33(8): 108432.
  1. 18.   dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
  2. Ou, Jianhong; Liu, Haibo; Nirala, Niraj K.; Stukalov, Alexey; Acharya,Usha; Green, Michael R.; Zhu, Lihua Julie
  3. PLOS ONE. 2020, NOV 6; 15(11):
  1. 19.   Tumor suppressor ATP4B serve as a promising biomarker for worsening of gastric atrophy and poor differentiation
  2. Pan, Yuanming; Wang, Xin; He, Yuqi; Lin, Shuye; Zhu, Min; Li, Yangjie; Wang, Jianxun; Wang, Jiheng; Ma, Xianzong; Xu, Junfeng; Yang, Lang; Yang, Guibin; Huang, Jiaqiang; Lu, Youyong; Sheng, Jianqiu
  3. Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association. 2020, Oct 27;
  1. 20.   Generalized enzymatic mechanism of catalysis by tetrameric L-asparaginases from mesophilic bacteria
  2. Strzelczyk,Pawel; Zhang,Di; Dyba,Marzena; Wlodawer,Alexander; Lubkowski,Jacek
  3. SCIENTIFIC REPORTS. 2020, OCT 15; 10(1):
  1. 21.   Increased Single-Spectrum Top-Down Protein Sequence Coverage in Trapping Mass Spectrometers with Chimeric Ion Loading
  2. Weisbrod, Chad R.; Anderson, Lissa C.; Greer, Joseph B.; Dehart,Caroline; Hendrickson, Christopher L.
  3. ANALYTICAL CHEMISTRY. 2020, SEP 15; 92(18): 12193-12200.
  1. 22.   Engineering and characterization of apH-sensitive homodimeric antiparallel coiled coil
  2. Nagarkar, Radhika P.; Fichman, Galit; Schneider,Joel
  3. PEPTIDE SCIENCE. 2020, AUG 14;
  1. 23.   Sprouty2 regulates positioning of retinal progenitors through suppressing the Ras/Raf/MAPK pathway
  2. Sun,Jian; Yoon,Jaeho; Lee,Moonsup; Hwang,Rich Yooseok; Daar,Ira
  3. Scientific reports. 2020, Aug 13; 10(1): 13752.
  1. 24.   Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
  2. Ueda, George; Antanasijevic, Aleksandar; Fallas, Jorge A; Sheffler, William; Copps, Jeffrey; Ellis, Daniel; Hutchinson, Geoffrey B; Moyer, Adam; Yasmeen, Anila; Tsybovsky,Yaroslav; Park, Young-Jun; Bick, Matthew J; Sankaran, Banumathi; Gillespie, Rebecca A; Brouwer, Philip Jm; Zwart, Peter H; Veesler, David; Kanekiyo, Masaru; Graham, Barney S; Sanders, Rogier W; Moore, John P; Klasse, Per Johan; Ward, Andrew B; King, Neil P; Baker, David
  3. eLife. 2020, Aug 04; 9: pii: 9:e57659.
  1. 25.   Nucleotide-Specific Autoinhibition of Full-Length K-Ras4B Identified by Extensive Conformational Sampling
  2. Dudas, Balint; Merzel, Franci; Jang,Hyunbum; Nussinov,Ruth; Perahia, David; Balog, Erika
  3. Frontiers in molecular biosciences. 2020, JUL 10; 7: 145.
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