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  1. 1.   GAP positions catalytic H-Ras residue Q61 for GTP hydrolysis in molecular dynamics simulations, complicating chemical rescue of Ras deactivation
  2. Patel, Lara A; Waybright,Tim; Stephen,Andy; Neale, Chris
  3. Computational Biology and Chemistry. 2023, Mar 01; 104: 107835.
  1. 2.   The tumor suppressor activity of DLC1 requires the interaction of its START domain with Phosphatidylserine, PLCD1, and Caveolin-1
  2. Sanchez-Solana, Beatriz; Wang, Dunrui; Qian, Xiaolan; Velayoudame, Parthibane; Simanshu,Dhirendra; Acharya,Jairaj; Lowy, Douglas R
  3. Molecular Cancer. 2021, Nov 02; 20(1):
  1. 3.   Structural Insights into the SPRED1-Neurofibromin-KRAS Complex and Disruption of SPRED1-Neurofibromin Interaction by Oncogenic EGFR
  2. Yan,Wupeng; Markegard, Evan; Dharmaiah, Srisathiyanarayanan; Urisman, Anatoly; Drew, Matthew; Esposito,Dom; Scheffzek, Klaus; Nissley,Dwight; McCormick, Frank; Simanshu,Dhirendra
  3. Cell reports. 2020, Jul 21; 32(3): 107909.
  1. 4.   Antxr1, Which is a Target of Runx2, Regulates Chondrocyte Proliferation and Apoptosis
  2. Jiang, Qing; Qin, Xin; Yoshida, Carolina Andrea; Komori, Hisato; Yamana, Kei; Ohba, Shinsuke; Hojo, Hironori; St Croix,Brad; Kawata-Matsuura, Viviane K S; Komori, Toshihisa
  3. International journal of molecular sciences. 2020, APR; 21(7): pii: ijms21072425.
  1. 5.   Optimization of sortase A ligation for flexible engineering of complex protein systems
  2. Li,Jess; Zhang,Yue; Soubias,Olivier; Khago,Domarin; Chao, Fa-an; Li, Yifei; Shaw, Katherine; Byrd,Robert
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2020, FEB 28; 295(9): 2664-2675.
  1. 6.   Biochemical and structural analyses reveal that the tumor suppressor neurofibromin (NF1) forms a high-affinity dimer
  2. Sherekar,Mukul; Han, Sae-Won; Ghirlando, Rodolfo; Messing,Simon; Drew,Matt; Rabara,Dana; Waybright,Tim; Juneja, Puneet; O'Neill, Hugh; Stanley, Christopher B; Bhowmik, Debsindhu; Ramanathan, Arvind; Subramaniam,Sriram; Nissley,Dwight; Gillette,Bill; McCormick, Frank; Esposito,Dom
  3. The Journal of biological chemistry. 2020, JAN 24; 295(4): 1105-1119.
  1. 7.   Unraveling the molecular mechanism of interactions of the Rho GTPases Cdc42 and Rac1 with the scaffolding protein IQGAP2
  2. Ozdemir, E Sila; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Li, Zhigang; Sacks, David B; Nussinov, Ruth
  3. The Journal of Biological Chemistry. 2018, Mar 9; 293(10): 3685-3699.
  1. 8.   Alternative Allosteric Mechanisms Can Regulate the Substrate and E2 in SUMO Conjugation
  2. Karaca, E.; Tozluoglu, M.; Nussinov, R.; Haliloglu, T.
  3. Journal of Molecular Biology. 2011, Mar; 406(4): 620-630.
  1. 9.   A Mechanistic View of the Role of E3 in Sumoylation
  2. Tozluoglu, M.; Karaca, E.; Nussinov, R.; Halilogiu, T.
  3. Plos Computational Biology. 2010, Aug; 6(8): 10.
  1. 10.   Evaluation of nonviral risk factors for nasopharyngeal carcinoma in a high-risk population of Southern China
  2. Guo, X. C.; Johnson, R. C.; Deng, H.; Liao, J.; Guan, L.; Nelson, G. W.; Tang, M. Z.; Zheng, Y. M.; de The, G.; O'Brien, S. J.; Winkler, C. A.; Zeng, Y.
  3. International Journal of Cancer. 2009 124(12): 2942-2947.
  1. 11.   Loss of SUMO1 in mice affects RanGAP1 localization and formation of PML nuclear bodies, but is not lethal as it can be compensated by SUMO2 or SUMO3
  2. Evdokimov, E.; Sharma, P.; Lockett, S. J.; Lualdi, M.; Kuehn, M. R.
  3. Journal of Cell Science. 2008 121(24): 4106-4113.
  1. 12.   Nf1 expression is dependent on strain background: implications for tumor suppressor haploinsufficiency studies
  2. Hawes, J. J.; Tuskan, R. G.; Reilly, K. M.
  3. Neurogenetics. 2007, Apr; 8(2): 121-130.
  1. 13.   Mechanisms of guanosine triphosphate hydrolysis by Ras and Ras-GAP proteins as rationalized by ab initio QM/MM simulations
  2. Grigorenko, B. L.; Nemukhin, A. V.; Shadrina, M. S.; Topol, I. A.; Burt, S. K.
  3. Proteins-Structure Function and Bioinformatics. 2007, Feb; 66(2): 456-466.
  1. 14.   5 ' UTR of the neurogenic bHLH Nex1/MARH-2/NeuroD6 gene is regulated by two distinct promoters through CRE and C/EBP binding sites
  2. Uittenbogaard, M.; Martinka, D. L.; Johnson, P. F.; Vinson, C.; Chiaramello, A.
  3. Journal of Neuroscience Research. 2007, Jan; 85(1): 1-18.
  1. 15.   Fluorination approach to achieving tunable-optical-gap and large-optical-gap nanomaterials from carbon-caged nanoparticles
  2. Xie, J. R. H.; Zhao, J. J.; Sun, G. Y.; Cioslowski, J.
  3. Journal of Computational and Theoretical Nanoscience. 2007, Jan; 4(1): 142-146.
  1. 16.   A set of recombineering plasmids for gram-negative bacteria
  2. Datta, S.; Costantino, N.; Court, D. L.
  3. Gene. 2006, Sep; 379: 109-115.
  1. 17.   What is hidden in the pannexin treasure trove: the sneak peek and the guesswork
  2. Litvin, O.; Tiunova, A.; Connell-Alberts, Y.; Panchin, Y.; Baranova, A.
  3. Journal of Cellular and Molecular Medicine. 2006, Jul-Sep; 10(3): 613-634.
  1. 18.   DLC-1, a Rho GTPase-activating protein with tumor suppressor function, is essential for embryonic development
  2. Durkin, M. E.; Avner, M. R.; Huh, C. G.; Yuan, B. Z.; Thorgeirsson, S. S.; Popescu, N. C.
  3. Febs Letters. 2005, FEB 14; 579(5): 1191-1196.
  1. 19.   Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases
  2. Chen, Z. H.; Schneider, T. D.
  3. Nucleic Acids Research. 2005 33(19): 6172-6187.
  1. 20.   A method for cloning and sequencing long palindromic DNA junctions
  2. Rattray, A. J.
  3. Nucleic Acids Research. 2004, NOV 8; 32(19): published online-published online.
  1. 21.   Fourier transform ion cyclotron resonance MS reveals the presence of a water molecule in an enzyme transition-state analogue complex
  2. Borchers, C. H.; Marquez, V. E.; Schroeder, G. K.; Short, S. A.; Snider, M. J.; Speir, J. P.; Wolfenden, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2004, OCT 26; 101(43): 15341-15345.
  1. 22.   A proteomic characterization of the plasma membrane of human epidermis by high-throughput mass spectrometry
  2. Blonder, J.; Terunuma, A.; Conrads, T. R.; Chan, K. C.; Yee, C.; Lucas, D. A.; Schaefer, C. F.; Yu, L. R.; Issaq, H. J.; Veenstra, T. D.; Vogel, J. C.
  3. Journal of Investigative Dermatology. 2004, OCT; 123(4): 691-699.
  1. 23.   Excitations, optical absorption spectra, and optical excitonic gaps of heterofullerenes. 1. C-60, C59N+, and C48N12: Theory and experiment
  2. Xie, R. H.; Bryant, G. W.; Sun, G. Y.; Nicklaus, M. C.; Heringer, D.; Frauenheim, T.; Manaa, M. R.; Smith, V. H.; Araki, Y.; Ito, O.
  3. Journal of Chemical Physics. 2004 120(11): 5133-5147.
  1. 24.   Real-time gap ligase chain reaction: A rapid semiquantitative assay for detecting p53 mutation at low levels in surgical margins and lymph nodes from resected lung and head and neck tumors
  2. Harden, S. V.; Thomas, D. C.; Benoit, N.; Minhas, K.; Westra, W. H.; Califano, J. A.; Koch, W.; Sidransky, D.
  3. Clinical Cancer Research. 2004 10(7): 2379-2385.
  1. 25.   Tuning spectral properties of fullerenes by substitutional doping
  2. Xie, R. H.; Bryant, G. W.; Sun, G. Y.; Kar, T.; Chen, Z. F.; Smith, V. H.; Araki, Y.; Tagmatarchis, N.; Shinohara, H.; Ito, O.
  3. Physical Review B. 2004 69(20, Art. No. 201403):
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