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  1. 1.   Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
  2. Xi, Sichuan; Shan, Jigui; Wu, Xinwei; Wang, Haitao; Zhang, Mary R; Oyetunji, Shakirat; Xu, Hong; Xiao, Zuoxiang; Tolunay, Tuana; Carr, Shamus R; Hoang, Chuong D; Schrump, David S
  3. Cellular & Molecular Biology Letters. 2025, Apr 10; 30(1): 44.
  1. 2.   Ror gamma t-positive dendritic cells are required for the induction of peripheral regulatory T cells in response to oral antigens
  2. Rodrigues, Patrick Fernandes; Wu, Shitong; Trsan, Tihana; Panda, Santosh K; Fachi, José Luís; Liu, Yizhou; Du, Siling; de Oliveira, Sarah; Antonova, Alina Ulezko; Khantakova, Darya; Sudan, Raki; Desai, Pritesh; Diamond, Michael S; Gilfillan, Susan; Anderson,Stephen; Cella, Marina; Colonna, Marco
  3. Cell. 2025, Apr 01;
  1. 3.   Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later
  2. Spangler, Abby; Shimberg, Geoffrey D; Mantus, Grace E; Malek, Rory; Cominsky, Lauren Y; Tsybovsky,Yaroslav; Li,Ning; Gillespie, Rebecca A; Ravichandran, Michelle; Creanga, Adrian; Raab, Julie E; Gajjala, Suprabhath R; Mendoza, Floreliz; Houser, Katherine V; Dropulic, Lesia; McDermott, Adrian B; Kanekiyo, Masaru; Andrews, Sarah F
  3. Immunity. 2025, Feb 25;
  1. 4.   Structure of Complex III with Bound Antimalarial Agent CK-2-68 Provides Insights into Selective Inhibition of Plasmodium Cytochrome bc1 Complexes
  2. Esser, Lothar; Zhou, Fei; Zeher, Allison; Wu, Weimin; Huang, Rick; Yu, Chang-An; Lane, Kristin D; Wellems, Thomas E; Xia, Di
  3. The Journal of Biological Chemistry. 2023, Jul; 299(7): 104860.
  1. 5.   Aging and obesity prime the methylome and transcriptome of adipose stem cells for disease and dysfunction
  2. Xie, Shaojun; Choudhari, Sulbha; Wu, Chia-Lung; Abramson, Karen; Corcoran, David; Gregory, Simon G; Thimmapuram, Jyothi; Guilak, Farshid; Little, Dianne
  3. FASEB Journal : official publication of the Federation of American Societies for Experimental Biology. 2023, Mar; 37(3): e22785.
  1. 6.   Spatial and Functional Organization of Human Papillomavirus Replication Foci in the Productive Stage of Infection
  2. Khurana, Simran; Markowitz,Tovah; Kabat, Juraj; McBride, Alison A
  3. mBio. 2021, Dec 21; 12(6): e0268421.
  1. 7.   TET2 and DNMT3A mutations and exceptional response to 4'-thio-2'-deoxycytidine in human solid tumor models
  2. Yang, Sherry X; Hollingshead, Melinda; Rubinstein, Larry; Nguyen, Dat; Larenjeira, Angelo B A; Kinders,Robert; Difilippantonio, Michael; Doroshow, James H
  3. Journal of Hematology & Oncology. 2021, May 26; 14(1):
  1. 8.   Genome-wide Screens Identify Lineage- and Tumor-Specific Genes Modulating MHC-I- and MHC-II-Restricted Immunosurveillance of Human Lymphomas
  2. Dersh, Devin; Phelan, James D; Gumina, Megan E; Wang, Boya; Arbuckle, Jesse H; Holly, Jaroslav; Kishton, Rigel J; Markowitz,Tovah; Seedhom, Mina O; Fridlyand, Nathan; Wright, George W; Huang, Da Wei; Ceribelli, Michele; Thomas, Craig J; Lack,Justin; Restifo, Nicholas P; Kristie, Thomas M; Staudt, Louis M; Yewdell, Jonathan W
  3. Immunity. 2021, Jan 12; 54(1): 116-131.e10.
  1. 9.   Phosphorylation of SMURF2 by ATM exerts a negative feedback control of DNA damage response
  2. Tang, Liu-Ya; Thomas, Adam; Zhou, Ming; Zhang, Ying E
  3. The Journal of biological chemistry. 2020, Dec 25; 295(52): 18485-18493.
  1. 10.   Structural Features that Distinguish Inactive and Active PI3K Lipid Kinases
  2. Zhang,Mingzhen; Jang,Hyunbum; Nussinov,Ruth
  3. Journal of molecular biology. 2020, NOV 6; 432(22): 5849-5859.
  1. 11.   Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability
  2. Sebastian, Robin; Hosogane, Eri K; Sun, Eric G; Tran, Andy D; Reinhold, William C; Burkett,Sandra; Sturgill, David M; Gudla, Prabhakar R; Pommier, Yves; Aladjem, Mirit I; Oberdoerffer, Philipp
  3. Molecular cell. 2020, SEP 3; 79(5): 836-+.
  1. 12.   Evaluation of Pharmacodynamic Responses to Cancer Therapeutic Agents Using DNA Damage Markers
  2. Wilsker,Deborah; Barrett, Allison M.; Dull,Angie; Lawrence,Scott; Hollingshead,Melinda; Chen, Alice; Kummar, Shivaani; Parchment,Ralph; Doroshow, James H.; Kinders,Robert
  3. Clinical cancer research : an official journal of the American Association for Cancer Research. 2019, MAY 15; 25(10): 3084-3095.
  1. 13.   The mechanism of PI3K activation at the atomic level
  2. Zhang,Mingzhen; Jang,Hyunbum; Nussinov,Ruth
  3. Chemical science. 2019, Mar 28; 10(12): 3671-3680.
  1. 14.   BRCA1 Haploinsufficiency Is Masked by RNF168-Mediated Chromatin Ubiquitylation
  2. Zong, Dali; Adam, Salome; Wang, Yifan; Sasanuma, Hiroyuki; Callen, Elsa; Murga, Matilde; Day, Amanda; Kruhlak, Michael J.; Wong, Nancy; Munro, Meagan; Chaudhuri, Arnab Ray; Karim,Baktiar; Xia, Bing; Takeda, Shunichi; Johnson, Neil; Durocher, Daniel; Nussenzweig, Andre
  3. Molecular cell. 2019, MAR 21; 73(6): 1267-+.
  1. 15.   Commensal-specific T cell plasticity promotes rapid tissue adaptation to injury
  2. Harrison, Oliver J.; Linehan, Jonathan L.; Shih, Han-Yu; Bouladoux, Nicolas; Han, Seong-Ji; Smelkinson, Margery; Sen, Shurjo; Byrd, Allyson L.; Enamorado, Michel; Yao, Chen; Tamoutounour, Samira; Van Laethem, Francois; Hurabielle, Charlotte; Collins, Nicholas; Paun, Andrea; Salcedo, Rosalba; O'Shea, John J.; Belkaid, Yasmine
  3. Science (New York, N.Y.). 2019, Jan 4; 363(6422): 43-+.
  1. 16.   Genome-Wide Profiling of Cervical RNA-Binding Proteins Identifies Human Papillomavirus Regulation of RNASEH2A Expression by Viral E7 and E2F1
  2. Xu, Junfen; Liu, Habin; Yang, Yanqin; Wang, Xiaohong; Liu, Poching; Li, Yang; Meyers, Craig; Banerjee, Nilam Sanjib; Wang, Hsu-Kun; Cam, Maggie; Lu, Weiguo; Chow, Louise T.; Xie, Xing; Zhu, Jun; Zheng,Zhi-Ming
  3. MBIO. 2019, Jan-Feb; 10(1):
  1. 17.   Calmodulin (CaM) Activates PI3K alpha by Targeting the "Soft" CaM-Binding Motifs in Both the nSH2 and cSH2 Domains of p85 alpha
  2. Zhang,Mingzhen; Li, Zhigang; Wang, Guanqiao; Jang,Hyunbum; Sacks, David B.; Zhang, Jian; Gaponenko, Vadim; Nussinov,Ruth
  3. JOURNAL OF PHYSICAL CHEMISTRY B. 2018, Dec 13; 122(49): 11137-11146.
  1. 18.   NMR probing of invisible excited states using selectively labeled RNAs
  2. Leblanc, Regan; Longhini, Andrew P; Tugarinov, Vitali; Dayie, T Kwaku
  3. Journal of Biomolecular NMR. 2018, Jul; 71(3): 165-172.
  1. 19.   LMTK3 confers chemo-resistance in breast cancer
  2. Stebbing, Justin; Shah, Kalpit; Lit, Lei Cheng; Gagliano, Teresa; Ditsiou, Angeliki; Wang, Tingting; Wendler, Franz; Simon, Thomas; Szabo, Krisztina Sara; O'Hanlon, Tim; Dean, Michael; Roslani, April Camilla; Cheah, Swee Hung; Lee, Soo-Chin; Giamas, Georgios
  3. ONCOGENE. 2018, JUN; 37(23): 3113-3130.
  1. 20.   Interaction of Calmodulin with the cSH2 Domain of the p85 Regulatory Subunit
  2. Wang, Guanqiao; Zhang, Mingzhen; Jang, Hyunbum; Lu, Shaoyong; Lin, Shizhou; Chen, Guoqiang; Nussinov, Ruth; Zhang, Jian; Gaponenko, Vadim
  3. Biochemistry. 2018, Mar 27; 57(12): 1917-1928.
  1. 21.   Replication Stress Shapes a Protective Chromatin Environment across Fragile Genomic Regions
  2. Kim, Jeongkyu; Sturgill, David; Sebastian, Robin; Khurana, Simran; Tran, Andy D; Edwards, Garrett B; Kruswick, Alex; Burkett, Sandra; Hosogane, Eri K; Hannon, William W; Weyemi, Urbain; Bonner, William M; Luger, Karolin; Oberdoerffer, Philipp
  3. Molecular Cell. 2018, Jan 4; 69(1): 36-47.
  1. 22.   Phosphorylated fraction of H2AX as a measurement for DNA damage in cancer cells and potential applications of a novel assay
  2. Ji, Jay; Zhang, Yiping; Redon, Christophe E.; Reinhold, William C.; Chen, Alice P.; Fogli, Laura K.; Holbeck, Susan L.; Parchment, Ralph; Hollingshead, Melinda; Tomaszewski, Joseph E.; Dudon, Quentin; Pommier, Yves; Doroshow, James H.; Bonner, William M.
  3. PLOS ONE. 2017, Feb 3; 12(2): e0171582.
  1. 23.   An EZH2 polymorphism is associated with clinical outcome in metastatic colorectal cancer patients
  2. Crea, F.; Fornaro, L.; Paolicchi, E.; Masi, G.; Frumento, P.; Loupakis, F.; Salvatore, L.; Cremolini, C.; Schirripa, M.; Graziano, F.; Ronzoni, M.; Ricci, V.; Farrar, W. L.; Falcone, A.; Danesi, R.
  3. Annals of Oncology. 2012, May; 23(5): 1207-1213.
  1. 24.   A Phase I Study of Veliparib in Combination with Metronomic Cyclophosphamide in Adults with Refractory Solid Tumors and Lymphomas
  2. Kummar, S.; Ji, J. P.; Morgan, R.; Lenz, H. J.; Puhalla, S. L.; Belani, C. P.; Gandara, D. R.; Allen, D.; Kiesel, B.; Beumer, J. H.; Newman, E. M.; Rubinstein, L.; Chen, A.; Zhang, Y. P.; Wang, L. H.; Kinders, R. J.; Parchment, R. E.; Tomaszewski, J. E.; Doroshow, J. H.
  3. Clinical Cancer Research. 2012, Mar; 18(6): 1726-1734.
  1. 25.   A tumor suppressor function of Smurf2 associated with controlling chromatin landscape and genome stability through RNF20
  2. Blank, M.; Tang, Y.; Yamashita, M.; Burkett, S. S.; Cheng, S. Y.; Zhang, Y. E.
  3. Nature Medicine. 2012, Feb; 18(2): 227-234.
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