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  1. 1.   Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach
  2. Smith, Kyle P; Lee, Woonghee; Tonelli, Marco; Lee, Yeongjoon; Light, Samuel H; Cornilescu,Gabriel; Chakravarthy, Srinivas
  3. Protein Science : a Publication of the Protein Society. 2022, Feb 08; 31(5):
  1. 2.   Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis
  2. Nguyen, Phuong H.; Ramamoorthy, Ayyalusamy; Sahoo, Bikash R.; Zheng, Jie; Faller, Peter; Straub, John E.; Dominguez, Laura; Shea, Joan-Emma; Dokholyan, Nikolay; De Simone, Alfonso; Ma, Buyong; Nussinov,Ruth; Najafi, Saeed; Ngo, Son Tung; Loquet, Antoine; Chiricotto, Mara; Ganguly, Pritam; McCarty, James; Li, Mai Suan; Hall, Carol; Wang, Yiming; Miller, Yifat; Melchionna, Simone; Habenstein, Birgit; Timr, Stepan; Chen, Jiaxing; Hnath, Brianna; Strodel, Birgit; Kayed, Rakez; Lesne, Sylvain; Wei, Guanghong; Sterpone, Fabio; Doig, Andrew J.; Derreumaux, Philippe
  3. Chemical Reviews. 2021, Feb 24; 121(4): 2545-2647.
  1. 3.   New insights into structural and functional relationships between LonA proteases and ClpB chaperones
  2. Rotanova, Tatyana V; Andrianova, Anna G; Kudzhaev, Arsen M; Li,Mi; Botos, Istvan; Wlodawer,Alexander; Gustchina,Alla
  3. FEBS open bio. 2019, JUL 21;
  1. 4.   Identification of a homogenous structural basis for oligomerization by retroviral Rev-like proteins
  2. Umunnakwe, Cj; Dorman, Karin S; Dobbs, Drena; Carpenter, Susan
  3. Retrovirology. 2017, Aug 22; 14(1): 40.
  1. 5.   A Protocol for the Design of Protein and Peptide Nanostructure Self-Assemblies Exploiting Synthetic Amino Acids.
  2. Haspel, Nurit; Zheng, Jie; Aleman, Carlos; Zanuy, David; Nussinov, Ruth
  3. Methods in molecular biology (Clifton, N.J.). 2017 1529: 323-352.
  1. 6.   A Synthetic Mirror Image of Kalata B1 Reveals that Cyclotide Activity Is Independent of a Protein Receptor
  2. Sando, L.; Henriques, S. T.; Foley, F.; Simonsen, S. M.; Daly, N. L.; Hall, K. N.; Gustafson, K. R.; Aguilar, M. I.; Craik, D. J.
  3. Chembiochem. 2011, Nov; 12(16): 2456-2462.
  1. 7.   Synergistic Interactions between Repeats in Tau Protein and A beta Amyloids May Be Responsible for Accelerated Aggregation via Polymorphic States
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Biochemistry. 2011, Jun; 50(23): 5172-5181.
  1. 8.   On the Role of the SP1 Domain in HIV-1 Particle Assembly: a Molecular Switch?
  2. Datta, S. A. K. D. S. A. K.; Temeselew, L. G.; Crist, R. M.; Soheilian, F.; Kamata, A.; Mirro, J.; Harvin, D.; Nagashima, K.; Cachau, R. E.; Rein, A.
  3. Journal of Virology. 2011, May; 85(9): 4111-4121.
  1. 9.   Combinatorial Tau Pseudophosphorylation MARKEDLY DIFFERENT REGULATORY EFFECTS ON MICROTUBULE ASSEMBLY AND DYNAMIC INSTABILITY THAN THE SUM OF THE INDIVIDUAL PARTS
  2. Kiris, E.; Ventimiglia, D.; Sargin, M. E.; Gaylord, M. R.; Altinok, A.; Rose, K.; Manjunath, B. S.; Jordan, M. A.; Wilson, L.; Feinstein, S. C.
  3. Journal of Biological Chemistry. 2011, Apr; 286(16): 14257-14270.
  1. 10.   The capsid-spacer peptide 1 Gag processing intermediate is a dominant-negative inhibitor of HIV-1 maturation
  2. Checkley, M. A.; Luttge, B. G.; Soheilian, F.; Nagashima, K.; Freed, E. O.
  3. Virology. 2010, Apr; 400(1): 137-144.
  1. 11.   Recent progress in antiretrovirals - lessons from resistance
  2. Adamson, C. S.; Freed, E. O.
  3. Drug Discovery Today. 2008 13(9-10): 424-432.
  1. 12.   Determinants of activity of the HIV-1 maturation inhibitor PA-457
  2. Li, F.; Zoumplis, D.; Matallana, C.; Kilgore, N. R.; Reddick, M.; Yunus, A. S.; Adamson, C. S.; Salzwedel, K.; Martin, D. E.; Allaway, G. P.; Freed, E. O.; Wild, C. T.
  3. Virology. 2006, Dec; 356(1-2): 217-224.
  1. 13.   In vitro resistance to the human immunodeficiency virus type 1 maturation inhibitor PA-457 (Bevirimat)
  2. Adamson, C. S.; Ablan, S. D.; Boeras, I.; Goila-Gaur, R.; Soheilian, F.; Nagashima, K.; Li, F.; Salzwedel, K.; Sakalian, M.; Wild, C. T.; Freed, E. O.
  3. Journal of Virology. 2006, Nov; 80(22): 10957-10971.
  1. 14.   Human beta-defensins
  2. Pazgier, M.; Hoover, D. M.; Yang, D.; Lu, W.; Lubkowski, J.
  3. Cellular and Molecular Life Sciences. 2006, Jun; 63(11): 1294-1313.
  1. 15.   A structural similarity analysis of double-helical DNA
  2. Gardiner, E. J.; Hunter, C. A.; Lu, X. J.; Willett, P.
  3. Journal of Molecular Biology. 2004, OCT 29; 343(4): 879-889.
  1. 16.   C-terminal octylation rescues an inactive T20 mutant - Implications for the mechanism of HIV/simian immunodeficiency virus-induced membrane fusion
  2. Peisajovich, S. G.; Gallo, S. A.; Blumenthal, R.; Shai, Y.
  3. Journal of Biological Chemistry. 2003 278(23): 21012-21017.
  1. 17.   Conformational effects of DNA stretching
  2. Mazur, J.; Jernigan, R. L.; Sarai, A.
  3. Molecular Biology. 2003 37(2): 240-249.
  1. 18.   Fluctuations between stabilizing and destabilizing electrostatic contributions of ion pairs in conformers of the c-Myc-Max leucine zipper
  2. Kumar, S.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 2000 41(4): 485-497.
  1. 19.   A novel putative transcription factor protein MYT2 that preferentially binds supercoiled DNA and induces DNA synthesis in quiescent cells
  2. Shao, W.; Lee, A. Y.; Gulnik, S.; Gustchina, E.; Liu, Y. L.; Kung, H. F.; Erickson, J. W.
  3. Febs Letters. 2000 473(3): 363-369.
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