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  1. 1.   Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes
  2. Gagliardi, Alessia; Porter, Vanessa L; Zong, Zusheng; Bowlby, Reanne; Titmuss, Emma; Namirembe, Constance; Griner, Nicholas B; Petrello, Hilary; Bowen, Jay; Chan, Simon K; Culibrk, Luka; Darragh, Teresa M; Stoler, Mark H; Wright, Thomas C; Gesuwan, Patee; Dyer,Maureen; Ma, Yussanne; Mungall, Karen L; Jones, Steven J M; Nakisige, Carolyn; Novik, Karen; Orem, Jackson; Origa, Martin; Gastier-Foster, Julie M; Yarchoan, Robert; Casper, Corey; Mills, Gordon B; Rader, Janet S; Ojesina, Akinyemi I; Gerhard, Daniela S; Mungall, Andrew J; Marra, Marco A
  3. Nature genetics. 2020, Aug; 52(8): 800-810.
  1. 2.   Temporal/compartmental changes in viral RNA and neuronal injury in a primate model of NeuroAIDS
  2. Gonzalez, R. Gilberto; Fell, Robert; He, Julian; Campbell, Jennifer; Burdo, Tricia H.; Autissier, Patrick; Annamalai, Lakshmanan; Taheri, Faramarz; Parker, Termara; Lifson, Jeffrey; Halpern, Elkan F.; Vangel, Mark; Masliah, Eliezer; Westmoreland, Susan; Williams, Kenneth C.; Ratai, Eva-Maria
  3. PloS One. 2018, May 11; 13(5): e0196949.
  1. 3.   Higher Levels of CRP, D-dimer, IL-6, and Hyaluronic Acid Before Initiation of Antiretroviral Therapy (ART) Are Associated With Increased Risk of AIDS or Death
  2. Boulware, D. R.; Hullsiek, K. H.; Puronen, C. E.; Rupert, A.; Baker, J. V.; French, M. A.; Bohjanen, P. R.; Novak, R. M.; Neaton, J. D.; Sereti, I.; Grp, I. S.
  3. Journal of Infectious Diseases. 2011, Jun; 203(11): 1637-1646.
  1. 4.   High-dose zidovudine plus valganciclovir for Kaposi sarcoma herpesvirus-associated multicentric Castleman disease: a pilot study of virus-activated cytotoxic therapy
  2. Uldrick, T. S.; Polizzotto, M. N.; Aleman, K.; O'Mahony, D.; Wyvill, K. M.; Wang, V.; Marshall, V.; Pittaluga, S.; Steinberg, S. M.; Tosato, G.; Whitby, D.; Little, R. F.; Yarchoan, R.
  3. Blood. 2011, Jun; 117(26): 6977-6986.
  1. 5.   Spontaneous Control of HCV Is Associated With Expression of HLA-B*57 and Preservation of Targeted Epitopes
  2. Kim, A. Y.; Kuntzen, T.; Timm, J.; Nolan, B. E.; Baca, M. A.; Reyor, L. L.; Berical, A. C.; Feller, A. J.; Johnson, K. L.; Zur Wiesch, J. S.; Robbins, G. K.; Chung, R. T.; Walker, B. D.; Carrington, M.; Allen, T. M.; Lauer, G. M.
  3. Gastroenterology. 2011, Feb; 140(2): 686-U434.
  1. 6.   Damaged Intestinal Epithelial Integrity Linked to Microbial Translocation in Pathogenic Simian Immunodeficiency Virus Infections
  2. Estes, J. D.; Harris, L. D.; Klatt, N. R.; Tabb, B.; Pittaluga, S.; Paiardini, M.; Barclay, G. R.; Smedley, J.; Pung, R.; Oliveira, K. M.; Hirsch, V. M.; Silvestri, G.; Douek, D. C.; Miller, C. J.; Haase, A. T.; Lifson, J.; Brenchley, J. M.
  3. Plos Pathogens. 2010, Aug; 6(8): 15.
  1. 7.   Compromised gastrointestinal integrity in pigtail macaques is associated with increased microbial translocation, immune activation, and IL-17 production in the absence of SIV infection
  2. Klatt, N. R.; Harris, L. D.; Vinton, C. L.; Sung, H.; Briant, J. A.; Tabb, B.; Morcock, D.; McGinty, J. W.; Lifson, J. D.; Lafont, B. A.; Martin, M. A.; Levine, A. D.; Estes, J. D.; Brenchley, J. M.
  3. Mucosal Immunology. 2010, Jul; 3(4): 387-398.
  1. 8.   Exposure to HIV-1-encoded Toll-like receptor 8 ligands enhances monocyte response to microbial encoded Toll-like receptor 2/4 ligands
  2. Mureith, M. W.; Chang, J. J.; Lifson, J. D.; Ndung'u, T.; Altfeld, M.
  3. Aids. 2010, Jul; 24(12): 1841-1848.
  1. 9.   HLA-Associated Clinical Progression Correlates with Epitope Reversion Rates in Early Human Immunodeficiency Virus Infection
  2. Duda, A.; Lee-Turner, L.; Fox, J.; Robinson, N.; Dustan, S.; Kaye, S.; Fryer, H.; Carrington, M.; McClure, M.; Mclean, A. R.; Fidler, S.; Weber, J.; Phillips, R. E.; Frater, A. J.
  3. Journal of Virology. 2009 83(3): 1228-1239.
  1. 10.   Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz
  2. Keele, B. F.; Jones, J. H.; Terio, K. A.; Estes, J. D.; Rudicell, R. S.; Wilson, M. L.; Li, Y. Y.; Learn, G. H.; Beasley, T. M.; Schumacher-Stankey, J.; Wroblewski, E.; Mosser, A.; Raphael, J.; Kamenya, S.; Lonsdorf, E. V.; Travis, D. A.; Mlengeya, T.
  3. Nature. 2009 460(7254): 515-519.
  1. 11.   Availability of activated CD4(+) T cells dictates the level of viremia in naturally SIV-infected sooty mangabeys
  2. Klatt, N. R.; Villinger, F.; Bostik, P.; Gordon, S. N.; Pereira, L.; Engram, J. C.; Mayne, A.; Dunham, R. M.; Lawson, B.; Ratcliffe, S. J.; Sodora, D. L.; Else, J.; Reimann, K.; Staprans, S. I.; Haase, A. T.; Estes, J. D.; Silvestri, G.; Ansari, A. A.
  3. Journal of Clinical Investigation. 2008 118(6): 2039-2049.
  1. 12.   Increased loss of CCR5(+) CD45RA(-) CD4(+) T cells in CD8(+) lymphocyte-depleted simian immunodeficiency virus-infected rhesus monkeys
  2. Veazey, R. S.; Acierno, P. M.; McEvers, K. J.; Baumeister, S.; Foster, G. J.; Rett, M. D.; Newberg, M. H.; Kuroda, M. J.; Williams, K.; Kim, E. Y.; Wolinsky, S. M.; Rieber, E. P.; Piatak, M.; Lifson, J. D.; Montefiori, D. C.; Brown, C. R.; Hirsch, V.
  3. Journal of Virology. 2008 82(11): 5618-5630.
  1. 13.   Idiopathic CD4+ lymphocytopenia: natural history and prognostic factors
  2. Zonios, D. I.; Falloon, J.; Bennett, J. E.; Shaw, P. A.; Chaitt, D.; Baseler, M. W.; Adelsberger, J. W.; Metcalf, J. A.; Polis, M. A.; Kovacs, S. J.; Kovacs, J. A.; Davey, R. T.; Lane, H. C.; Masur, H.; Sereti, I.
  3. Blood. 2008 112(2): 287-294.
  1. 14.   Progressive CD4(+) central-memory T cell decline results in CD4(+) effector-memory insufficiency and overt disease in chronic SIV infection
  2. Okoye, A.; Meier-Schellersheim, M.; Brenchley, J. M.; Hagen, S. I.; Walker, J. M.; Rohankhedkar, M.; Lum, R.; Edgar, J. B.; Planer, S. L.; Legasse, A.; Sylwester, A. W.; Piatak, M.; Lifson, J. D.; Maino, V. C.; Sodora, D. L.; Douek, D. C.; Axthelm, M. K.; Grossman, Z.; Picker, L. J.
  3. Journal of Experimental Medicine. 2007, Sep; 204(9): 2171-2185.
  1. 15.   HIV/AIDS: in search of an animal model
  2. Ambrose, Z.; KewalRamani, V. N.; Bieniasz, P. D.; Hatziioannou, T.
  3. Trends in Biotechnology. 2007, Aug; 25(8): 333-337.
  1. 16.   Why is Kaposi's sarcoma-associated herpesvirus not ubiquitous in the human population?
  2. Bagni, R.; Whity, D.
  3. Future Virology. 2007, May; 2(3): 243-246.
  1. 17.   Loss of naive cells accompanies memory CD4(+) T-cell depletion during long-term progression to AIDS in simian immunodeficiency virus-infected macaques
  2. Nishimura, Y.; Igarashi, T.; Buckler-White, A.; Buckler, C.; Imamichi, H.; Goeken, R. M.; Lee, W. R.; Lafont, B. A. P.; Byrum, R.; Lane, H. C.; Hirsch, V. M.; Martin, M. A.
  3. Journal of Virology. 2007, Jan; 81(2): 893-902.
  1. 18.   IL-15 induces C4+ effector memory T cell production and tissue emigration in nonhuman primates
  2. Picker, L. J.; Reed-Inderbitzin, E. F.; Hagen, S. I.; Edgar, J. B.; Hansen, S. G.; Legasse, A.; Planer, S.; Piatak, M.; Lifson, J. D.; Maino, V. C.; Axthelm, M. K.; Villinger, F.
  3. Journal of Clinical Investigation. 2006, JUN; 116(6): 1514-1524.
  1. 19.   Antibody-based inhibitors of HIV infection
  2. Choudhry, V.; Zhang, M. Y.; Dimitrova, D.; Prabakaran, P.; Dimitrov, A. S.; Fouts, T. R.; Dimitrov, D. S.
  3. Expert Opinion on Biological Therapy. 2006, MAY; 6(5): 523-531.
  1. 20.   Premature induction of an immunosuppressive regulatory T cell response during acute simian immunodeficiency virus infection
  2. Estes, J. D.; Li, Q. S.; Reynolds, M. R.; Wietgrefe, S.; Duan, L. J.; Schacker, T.; Picker, L. J.; Watkins, D. I.; Lifson, J. D.; Reilly, C.; Carlis, J.; Haase, A. T.
  3. Journal of Infectious Diseases. 2006, Mar; 193(5): 703-712.
  1. 21.   Innate immune dysfunction in HIV infection: Effect of HIV envelope-NK cell interactions
  2. Kottilil, S.; Shin, K.; Jackson, J. O.; Reitano, K. N.; O'Shea, M. A.; Yang, J.; Hallahan, C. W.; Lempicki, R.; Arthos, J.; Fauci, A. S.
  3. Journal of Immunology. 2006, JAN 15; 176(2): 1107-1114.
  1. 22.   Haplotype analysis of the SDF-1 (CXCL12) gene in a longitudinal HIV-1/AIDS cohort study
  2. Modi, W. S.; Scott, K.; Goedert, J. J.; Vlahov, D.; Buchbinder, S.; Detels, R.; Donfield, S.; O'Brien, S. J.; Winkler, C.
  3. Genes and Immunity. 2005, DEC; 6(8): 691-698.
  1. 23.   Potent antiviral activity of North-methanocarbathymidine against Kaposi's sarcoma-associated herpesvirus
  2. Zhu, W. M.; Burnette, A.; Dorjsuren, D.; Roberts, P. E.; Huleihel, M.; Shoemaker, R. H.; Marquez, V. E.; Agbaria, R.; Sei, S.
  3. Antimicrobial Agents and Chemotherapy. 2005, DEC; 49(12): 4965-4973.
  1. 24.   Human beta-defensins suppress human immunodeficiency virus infection: Potential role in mucosal protection
  2. Sun, L. L.; Finnegan, C. M.; Kish-Catalone, T.; Blumenthal, R.; Garzino-Demo, P.; Maggiore, G. M. L.; Berrone, S.; Kleinman, C.; Wu, Z. B.; Abdelwahab, S.; Lu, W. Y.; Garzino-Demo, A.
  3. Journal of Virology. 2005, NOV; 79(22): 14318-14329.
  1. 25.   Proteins that bind high-mannose sugars of the HIV envelope
  2. Botos, I.; Wlodawer, A.
  3. Progress in Biophysics and Molecular Biology. 2005, JUN; 88(2): 233-282.
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