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  1. 1.   Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome
  2. Chen,Xiang; Dorris, Zachary; Shi,Dan; Huang, Rick K; Khant,Htet; Fox,Tara; De Val Alda,Natalia; Williams, Dewight; Zhang,Ping; Walters,Kylie
  3. Structure (London, England : 1993). 2020, NOV 3; 28(11): 1206-+.
  1. 2.   Noncoding Y RNAs regulate the levels, subcellular distribution and protein interactions of their Ro60 autoantigen partner
  2. Leng,Yuanyuan; Sim,Soyeong; Magidson,Valentin; Wolin,Sandra
  3. Nucleic acids research. 2020, JUL 9; 48(12): 6919-6930.
  1. 3.   The quest for high-resolution G protein-coupled receptor-G protein structures
  2. Grisshammer,Reinhard
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, MAR 31; 117(13): 6971-6973.
  1. 4.   Physiologically relevant orthogonal assays for the discovery of small-molecule modulators of WIP1 phosphatase in high-throughput screens
  2. Clausse, Victor; Tao, Dingyin; Debnath, Subrata; Fang, Yuhong; Tagad, Harichandra D; Wang, Yuhong; Sun, Hongmao; LeClair, Christopher A; Mazur, Sharlyn J; Lane, Kelly; Shi, Zhen-Dan; Vasalatiy, Olga; Eells, Rebecca; Baker, Lynn K; Henderson, Mark J; Webb, Martin R; Shen, Min; Hall, Matthew D; Appella, Ettore; Appella, Daniel H; Coussens,Nathan
  3. The Journal of biological chemistry. 2019, Nov 15; 294(46): 17654-17668.
  1. 5.   Contribution of SLC22A12 on hypouricemia and its clinical significance for screening purposes
  2. Cha, Do Hyeon; Gee, Heon Yung; Cachau,Raul; Choi, Jong Mun; Park, Daeui; Jee, Sun Ha; Ryu, Seungho; Kim, Kyeong Kyu; Won, Hong-Hee; Limou, Sophie; Myung, Woojae; Winkler,Cheryl; Cho,Sungkweon
  3. Scientific reports. 2019, Oct 07; 9(1): 14360.
  1. 6.   Opportunistic complexes of E. coli L-asparaginases with citrate anions
  2. Lubkowski,Jacek; Chan, Waikin; Wlodawer,Alexander
  3. Scientific reports. 2019, Jul 30; 9(1): 11070.
  1. 7.   Emerging Allosteric Mechanism of EGFR Activation in Physiological and Pathological Contexts
  2. Tsai,Chung-Jung; Nussinov,Ruth
  3. Biophysical journal. 2019, Jul 9; 117(1): 5-13.
  1. 8.   Selective Small-Molecule Targeting of a Triple Helix Encoded by the Long Noncoding RNA, MALAT1
  2. Abulwerdi,Fardokht; Xu, Wenbo; Ageeli, Abeer A.; Yonkunas, Michael J.; Arun, Gayatri; Nam, Hyeyeon; Schneekloth,Jay; Dayie, Theodore Kwaku; Spector, David; Baird, Nathan; Le Grice,Stuart
  3. ACS CHEMICAL BIOLOGY. 2019, Feb; 14(2): 223-235.
  1. 9.   Ligand binding to a remote site thermodynamically corrects the F508del mutation in the human cystic fibrosis transmembrane conductance regulator
  2. Wang, Chi; Aleksandrov, Andrei A.; Yang, Zhengrong; Forouhar, Farhad; Proctor, Elizabeth A.; Kota, Pradeep; An, Jianli; Kaplan, Anna; Khazanov, Netaly; Boel, Gregory; Stockwell, Brent R.; Senderowitz, Hanoch; Dokholyan, Nikolay V.; Riordan, John R.; Brouillette, Christie G.; Hunt, John F.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, NOV 16; 293(46): 17685-17704.
  1. 10.   Cullin neddylation may allosterically tune polyubiquitin chain length and topology
  2. Onel, Melis; Sumbul, Fidan; Liu, Jin; Nussinov, Ruth; Haliloglu, Turkan
  3. BIOCHEMICAL JOURNAL. 2017, Feb 20; 474(5): 781-795.
  1. 11.   Structure of the cytoplasmic domain of Yersinia pestis YscD, an essential component of the type III secretion system
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2012, Mar; 68: 201-209.
  1. 12.   Characterization of two mouse models of metastatic pheochromocytoma using bioluminescence imaging
  2. Giubellino, A.; Woldemichael, G. M.; Sourbier, C.; Lizak, M. J.; Powers, J. F.; Tischler, A. S.; Pacak, K.
  3. Cancer Letters. 2012, Mar; 316(1): 46-52.
  1. 13.   Flexible Cullins in Cullin-RING E3 Ligases Allosterically Regulate Ubiquitination
  2. Liu, J.; Nussinov, R.
  3. Journal of Biological Chemistry. 2011, Nov; 286(47): 40934-40942.
  1. 14.   Dynamic Allostery: Linkers Are Not Merely Flexible
  2. Ma, B. Y.; Tsai, C. J.; Haliloglu, T.; Nussinov, R.
  3. Structure. 2011, Jul; 19(7): 907-917.
  1. 15.   A Proteomic and Transcriptomic Approach Reveals New Insight into beta-methylthiolation of Escherichia coli Ribosomal Protein S12
  2. Strader, M. B.; Costantino, N.; Elkins, C. A.; Chen, C. Y.; Patel, I.; Makusky, A. J.; Choy, J. S.; Court, D. L.; Markey, S. P.; Kowalak, J. A.
  3. Molecular & Cellular Proteomics. 2011, Mar; 10(3): 10.
  1. 16.   Working on a chain: E3s ganging up for ubiquitylation
  2. Metzger, M. B.; Weissman, A. M.
  3. Nature Cell Biology. 2010, Dec; 12(12): 1124-1126.
  1. 17.   Rbx1 Flexible Linker Facilitates Cullin-RING Ligase Function Before Neddylation and After Deneddylation
  2. Liu, J.; Nussinov, R.
  3. Biophysical Journal. 2010, Aug; 99(3): 736-744.
  1. 18.   Molecular Dynamics Reveal the Essential Role of Linker Motions in the Function of Cullin-RING E3 Ligases
  2. Liu, J.; Nussinov, R.
  3. Journal of Molecular Biology. 2010, Mar; 396(5): 1508-1523.
  1. 19.   The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation
  2. Liu, J.; Nussinov, R.
  3. Plos Computational Biology. 2009 5(10):
  1. 20.   Simultaneous imaging of tumor oxygenation and microvascular permeability using Overhauser enhanced MRI
  2. Matsumoto, S.; Yasui, H.; Batra, S.; Kinoshita, Y.; Bernardo, M.; Munasinghe, J. P.; Utsumi, H.; Choudhuri, R.; Devasahayam, N.; Subramanian, S.; Mitchell, J. B.; Krishna, M. C.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2009 106(42): 17898-17903.
  1. 21.   Structure-assisted discovery of Variola major H1 phosphatase inhibitors
  2. Phan, J.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2007, Jun; 63: 698-704.
  1. 22.   The genome of the sea urchin Strongylocentrotus purpuratus
  2. Sodergren, E.; Weinstock, G. M.; Davidson, E. H.; Cameron, R. A.; Gibbs, R. A.; Weinstock, G. M.; Angerer, R. C.; Angerer, L. M.; Arnone, M. I.; Burgess, D. R.; Burke, R. D.; Cameron, R. A.; Coffman, J. A.; Davidson, E. H.; Dean, M.; Elphick, M. R.; Ettensohn, C. A.; Foltz, K. R.; Hamdoun, A.; Hynes, R. O.; Klein, W. H.; Marzluff, W.; McClay, D. R.; Morris, R. L.; Mushegian, A.; Rast, J. P.; Sodergren, E.; Smith, L. C.; Thorndyke, M. C.; Vacquier, V. D.; Weinstock, G. M.; Wessel, G. M.; Wray, G.; Zhang, L.; Sodergren, E.; Weinstock, G. M.; Angerer, R. C.; Angerer, L. M.; Cameron, R. A.; Davidson, E. H.; Elsik, C. G.; Ermolaeva, O.; Hlavina, W.; Hofmann, G.; Kitts, P.; Landrum, M. J.; Mackey, A. J.; Maglott, D.; Panopoulou, G.; Poustka, A. J.; Pruitt, K.; Sapojnikov, V.; Song, X. Z.; Souvorov, A.; Solovyev, V.; Wei, Z.; Whittaker, C. A.; Worley, K.; Zhang, L.; Sodergren, E.; Weinstock, G. M.; Durbin, K. J.; Gibbs, R. A.; Shen, Y. F.; Song, X. Z.; Worley, K.; Zhang, L.; Wray, G.; Fedrigo, O.; Garfield, D.; Haygood, R.; Primus, A.; Satija, R.; Severson, T.; Zhang, L.; Sodergren, E.; Weinstock, G. M.; Gonzalez-Garay, M. L.; Jackson, A. R.; Milosavljevic, A.; Song, X. Z.; Tong, M.; Worley, K.; Ettensohn, C. A.; Cameron, R. A.; Killian, C. E.; Landrum, M. J.; Livingston, B. T.; Wilt, F. H.; Coffman, J. A.; Marzluff, W.; Mushegian, A.; Adams, N.; Belle, R.; Carbonneau, S.; Cheung, R.; Cormier, P.; Cosson, B.; Croce, J.; Fernandez-Guerra, A.; Geneviere, A. M.; Goel, M.; Kelkar, H.; Morales, J.; Mulner-Lorillon, O.; Robertson, A. J.; Hamdoun, A.; Goldstone, J. V.; Adams, N.; Cole, B.; Dean, M.; Epel, D.; Gold, B.; Hahn, M. E.; Howard-Ashby, M.; Scally, M.; Stegeman, J. J.; Morris, R. L.; Allgood, E. L.; Cool, J.; Judkins, K. M.; McCafferty, S. S.; Musante, A. M.; Obar, R. A.; Rawson, A. P.; Rossetti, B. J.; Burgess, D. R.; Allgood, E. L.; Cool, J.; Gibbons, I. R.; Hoffman, M. P.; Judkins, K. M.; Leone, A.; McCafferty, S. S.; Morris, R. L.; Musante, A. M.; Obar, R. A.; Rawson, A. P.; Rossetti, B. J.; Wessel, G. M.; Davidson, E. H.; Cameron, R. A.; Istrail, S.; Materna, S. C.; Samanta, M. P.; Stolc, V.; Tongprasit, W.; Tu, Q.; Angerer, R. C.; Angerer, L. M.; Wei, Z.; Hynes, R. O.; Bergeron, K. F.; Brandhorst, B. P.; Burke, R. D.; Whittaker, C. A.; Whittle, J.; Cameron, R. A.; Berney, K.; Bottjer, D. J.; Calestani, C.; Davidson, E. H.; Peterson, K.; Chow, E.; Yuan, Q. A.; Elhaik, E.; Elsik, C. G.; Graur, D.; Reese, J. T.; Bosdet, I.; Heesun, S.; Marra, M. A.; Schein, J.; Dean, M.; Hamdoun, A.; Rast, J. P.; Smith, L. C.; Anderson, M. K.; Berney, K.; Brockton, V.; Buckley, K. M.; Cameron, R. A.; Cohen, A. H.; Fugmann, S. D.; Hibino, T.; Loza-Coll, M.; Majeske, A. J.; Messier, C.; Nair, S. V.; Pancer, Z.; Terwilliger, D. P.; Burke, R. D.; Elphick, M. R.; Klein, W. H.; Thorndyke, M. C.; Agca, C.; Angerer, L. M.; Arboleda, E.; Arnone, M. I.; Brandhorst, B. P.; Chen, N. S.; Churcher, A. M.; Hallbook, F.; Humphrey, G. W.; Hynes, R. O.; Idris, M. M.; Kiyama, T.; Liang, S. G.; Mellott, D.; Mu, X. Q.; Murray, G.; Olinski, R. P.; Raible, F.; Rowe, M.; Taylor, J. S.; Tessmar-Raible, K.; Wang, D.; Wilson, K. H.; Yaguchi, S.; Foltz, K. R.; Vacquier, V. D.; Wessel, G. M.; Gaasterland, T.; Galindo, B. E.; Gunaratne, H. J.; Howard-Ashby, M.; Humphrey, G. W.; Juliano, C.; Kinukawa, M.; Moy, G. W.; Neill, A. T.; Nomura, M.; Raisch, M.; Reade, A.; Roux, M. M.; Song, J. L.; Su, Y. H.; Townley, I. K.; Voronina, E.; Wong, J. L.; Arnone, M. I.; Thorndyke, M. C.; Amore, G.; Angerer, L. M.; Arboleda, E.; Branno, M.; Brown, E. R.; Cavalieri, V.; Duboc, V.; Duloquin, L.; Elphick, M. R.; Flytzanis, C.; Gache, C.; Geneviere, A. M.; Idris, M. M.; Lapraz, F.; Lepage, T.; Locascio, A.; Martinez, P.; Matassi, G.; Matranga, V.; McClay, D. R.; Morales, J.; Poustka, A. J.; Raible, F.; Range, R.; Rizzo, F.; Rottinger, E.; Rowe, M.; Tessmar-Raible, K.; Sodergren, E.; Weinstock, G. M.; Wilson, K.; McClay, D. R.; Angerer, L. M.; Arnone, M. I.; Beane, W.; Bradham, C.; Byrum, C.; Croce, J.; Duboc, V.; Duloquin, L.; Gache, C.; Geneviere, A. M.; Glenn, T.; Hibino, T.; Hussain, S.; Lapraz, F.; Lepage, T.; Livingston, B. T.; Loza, M.; Manning, G.; Miranda, E.; Miranda, E.; Range, R.; Rizzo, F.; Rottinger, E.; Thomason, R.; Walton, K.; Wei, Z.; Wessel, G. M.; Wikramanayke, A.; Wilson, K. H.; Whittaker, C.; Wu, S. Y.; Xu, R. H.; Davidson, E. H.; Arnone, M. I.; Branno, M.; Brown, C. T.; Cameron, R. A.; Chen, L. L.; Gray, R. F.; Howard-Ashby, M.; Istrail, S.; Lee, P. Y.; Locascio, A.; Martinez, P.; Materna, S. C.; Nam, J.; Oliveri, P.; Rizzo, F.; Smith, J.; Muzny, D.; Sodergren, E.; Gibbs, R. A.; Weinstock, G. M.; Bell, S.; Chacko, J.; Cree, A.; Curry, S.; Davis, C.; Dinh, H.; Dugan-Rocha, S.; Fowler, J.; Gill, R.; Hamilton, C.; Hernandez, J.; Hines, S.; Hume, J.; Jackson, L.; Jolivet, A.; Kovar, C.; Lee, S.; Lewis, L.; Miner, G.; Morgan, M.; Nazareth, L. V.; Okwuonu, G.; Parker, D.; Pu, L. L.; Shen, Y. F.; Shen, Y. F.; Wright, R.; Sea Urchin Genome Sequencing Consortium
  3. Science. 2006, Nov; 314(5801): 941-952.
  1. 23.   Distribution and three-dimensional structure of AIDS virus envelope spikes
  2. Zhu, P.; Liu, J.; Bess, J.; Chertova, E.; Lifson, J. D.; Grise, H.; Ofek, G. A.; Taylor, K. A.; Roux, K. H.
  3. Nature. 2006, JUN 15; 441(7095): 847-852.
  1. 24.   Meeting report: Exploiting the Tumor Microenvironment for Therapeutics
  2. Melillo, G.; Semenza, G. L.
  3. Cancer Research. 2006, MAY 1; 66(9): 4558-4560.
  1. 25.   WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data
  2. Yi, M.; Horton, J. D.; Cohen, J. C.; Hobbs, H. H.; Stephens, R. M.
  3. Bmc Bioinformatics. 2006, JAN 19; 7
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