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  1. 1.   Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE
  2. Van, Cong T S; Reboul, Cyril F; Caesar, Joseph J E; Meana-Pañeda, Rubén; Lountos,George; Deme, Justin C; Bryant, Owain J; Johnson, Steven; Piczak, Claire T; Valkov, Eugene; Lea, Susan M; Elmlund, Hans
  3. Acta Crystallographica. Section D, Structural biology. 2025, Aug 01;
  1. 2.   Trends in mobile phone ownership, frequency of number changes, and implications for public health service delivery in Uganda, 2010-2020
  2. Ssekubugu, Robert; Yeh, Ping Teresa; Nakawooya, Hadijja; Ssempijja,Victor; Kigozi, Godfrey; Kagaayi, Joseph; Nalugoda, Fred; Ekström, Anna Mia; Nantume, Betty; Serwadda, David; Kreniske, Philip; Zeebari, Zangin; Moffa, Michelle A; Chang, Larry W; Grabowski, Kate M; Makumbi, Fredrick; Nordenstedt, Helena
  3. Scientific Reports. 2025, Jul 11; 15(1): 25076.
  1. 3.   FMRP drives mRNP targets into translationally silenced complexes
  2. Kurosaki, Tatsuaki; Cho, Hana; Abshire, Elizabeth T; Pröschel, Christoph; Mitsutomi, Shuhei; Sato, Hanae; Simko, Eric A J; Fraser, Christopher S; Sakano, Hitomi; Maquat, Lynne E
  3. Molecular Cell. 2025, Jul 08;
  1. 4.   HIVGenoPipe: a nextflow pipeline for the detection of HIV-1 drug resistance using a real-time sample-specific reference sequence
  2. Dotrang,Thoai; Sherman,Brad; Dai,Lisheng; Khan,Muhammad; Highbarger,Helene; Bruchey,Whitney; Laverdure,Sylvain; Baseler,Michael; Imamichi,Tomozumi; Dewar,Robin; Chang,Weizhong
  3. BMC Bioinformatics. 2025, Jul 07; 26(1): 168.
  1. 5.   Exercise-induced microbiota metabolite enhances CD8 T cell antitumor immunity promoting immunotherapy efficacy
  2. Phelps, Catherine M; Willis, Nathaniel B; Duan, Tingting; Lee, Amanda H; Zhang, Yue; Rodriguez J, Daphne M; Pandey, Surya P; Laughlin, Colin R; Rosen, Aaron B I; McPherson, Alex C; Shapira, Jake H; Randhawa, Simran K; Hedden, Lee; Richie, Tanner G; Wiechman, Hallie M; Bender, Mackenzie J; Nemet, Ina; Zöhrer, Patrick A; Gottschalk, Rachel A; Schmitz, Kathryn H; Mullett, Steven J; Gelhaus, Stacy L; Davar, Diwakar; Zarour, Hassane M; Hinterleitner, Reinhard; Mossington, Thomas; Badger, Jonathan H; Rodrigues,Richard; McCulloch, John A; Lee, Sonny T M; Wagner, Karl-Heinz; Winter, Maria G; Winter, Sebastian E; Das, Jishnu; Pierre, Joseph F; Trinchieri, Giorgio; Meisel, Marlies
  3. Cell. 2025, Jul 04;
  1. 6.   Prolonged antiretroviral therapy use and hypertension in a retrospective cross-sectional study-Rakai, Uganda
  2. Mongo Bua, Grace; Ssempijja,Victor; Ndyanabo, Anthony; Nabukalu, Dorean; Basiima, Jesca; Kankaka, Edward Nelson; Nalugoda, Fred; Nakigozi, Gertrude; Kagaayi, Joseph; Chang, Larry W; Post, Wendy S; Quinn, Thomas C; Gray, Ron; Wawer, Maria; Kigozi, Godfrey; Reynolds, Steven J
  3. BMC Infectious Diseases. 2025, Jul 01; 25(1): 860.
  1. 7.   TRAIL induces cytokine production via the NFkB2 pathway promoting neutrophil chemotaxis and neutrophil-mediated immune-suppression in triple negative breast cancer cells
  2. Kundu, Manjari; Greer, Yoshimi E; Lobanov, Alexei; Ridnour, Lisa; Donahue, Renee N; Ng, Yeap; Ratnayake, Shashi; White, Karley; Voeller, Donna; Weltz, Sarah; Chen, Qingrong; Lockett,Stephen; Cam, Maggie; Meerzaman, Daoud; Wink, David A; Weigert, Roberto; Lipkowitz, Stanley
  3. Cancer Letters. 2025, Jun 28; 620: 217692.
  1. 8.   Antiproliferative Cassaine Diterpenoid Amines from the Leaves and Twigs of the Traditional Thai Medicinal Plant Erythrophleum teysmannii (Kurz) Craib
  2. Orfanoudaki,Maria; Wang,Dongdong; Du,Lin; Ruchirawat, Somsak; Kittakoop, Prasat; Grkovic,Tanja; Mahidol, Chulabhorn; O'Keefe,Barry
  3. Journal of Ethnopharmacology. 2025, Jun 25; 352: 120167.
  1. 9.   The Effect of Preanalytical Conditions on Blood-Based Inflammation Biomarkers
  2. O'Donnell, Thomas; Weinstein, Stephanie; Yano, Yukiko; Albert, Paul; Black, Amanda; Brotzman, Michelle; Diaz-Mayoral,Norma; Shreves, Alaina; Gerlanc, Nicole; Wyatt, Kathleen; Gaudet, Mia M; Abnet, Christian; Wentzensen, Nicolas
  3. Journal of Proteome Research. 2025, Jun 18;
  1. 10.   CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity
  2. Gorelik, Andrii; Paulo, Joao A; Schroeter, Christina B; Lad, Melanie; Shurr, Abigail; Mastrokalou, Chara; Siddiqi, Samrah; Suyari, Osamu; Brognard,John; Walter, David; Matthews, Jason; Palmer, Timothy M; Gygi, Steven P; Ahel, Ivan
  3. Proceedings of the National Academy of Sciences of the United States of America. 2025, Jun 17; 122(24): e2424985122.
  1. 11.   The oral microbiome and all-cause mortality in aUS population representative prospective cohort
  2. Vogtmann, Emily; Yano, Yukiko; Shi, Jianxin; Wan,Yunhu; Purandare, Vaishnavi; McLean, Jody; Li, Shilan; Knight, Rob; Kahle, Lisa; Hullings, Autumn G; Hua,Xing; Graubard, Barry I; Gillison, Maura L; Caporaso, J Gregory; Bokulich, Nicholas A; Blaser, Martin J; Freedman, Neal D; Chaturvedi, Anil K; Abnet, Christian C
  3. The Journal of Infectious Diseases. 2025, Jun 13;
  1. 12.   Unraveling the mechanism of RNA duplex unwinding by DEAD-box helicase DDX3X: Insights into Cooperativity and roles of protomers
  2. Dharavath, Sudhaker; Song, He; Ji, Xinhua
  3. Biochemical and Biophysical Research Communications. 2025, Jun 13; 777: 152206.
  1. 13.   Serological Surveillance of Betacoronaviruses in Bat Guano Collectors: Pre-COVID-19 Pandemic and Post-SARS-CoV-2 Emergence
  2. Ninwattana, Sasiprapa; Sterling, Spencer L; Rattanatumhi, Khwankamon; Thippamom, Nattakarn; Hirunpatrawong, Piyapha; Sangsub, Pakamas; Cheun-Arom, Thaniwan; Esposito,Dominic; Tan, Chee Wah; Yap, Wee Chee; Zhu, Feng; Wang, Lin-Fa; Laing, Eric D; Wacharapluesadee, Supaporn; Putcharoen, Opass
  3. Viruses. 2025, Jun 10; 17(6): 837.
  1. 14.   Large Congenital Melanocytic Nevus With LMNA::NTRK1 Fusion: Expanding Targeted Therapy Options for Congenital Nevi and Melanoma
  2. Nagarkar, Akanksha; Turbeville, Jackson; Hinshaw, Molly A; LeBoit, Philip E; Gagan, Jeffrey; Raffeld, Mark; Aldape, Kenneth; Shah, Niharika; Barr, Frederic G; Xi, Liqiang; Lee, Ina; Ferrone, Christina K; Pack, Svetlana D; Kaplan, Rosandra; Malone, Mary Frances Wedekind; Yohe,Marielle; Sargen, Michael R
  3. Journal of Cutaneous Pathology. 2025, Jun 03;
  1. 15.   Biophysical and structural analysis of KRAS switch-II pocket inhibitors reveals allele-specific binding constraints
  2. Alexander,Patrick; Chan,Albert; Rabara,Dana; Swain,Monalisa; Larsen,Erik; Dyba,Marcin; Chertov,Oleg; Ashraf, Mariam; Champagne,Alysia; Lin, Ken; Maciag,Anna; Gillette,William; Nissley,Dwight; McCormick, Frank; Simanshu,Dhirendra; Stephen,Andrew
  3. The Journal of Biological Chemistry. 2025, Jun 03; 110331.
  1. 16.   A Biosynthetic and Taxonomic Atlas of the Global Lichen Holobiont
  2. Waterworth, Samantha C; Egbert, Susan; Sorensen, John; O'Keefe,Barry; Beutler,John
  3. Environmental Microbiology. 2025, Jun; 27(6): e70112.
  1. 17.   Futility Monitoring in Clinical Trials
  2. Ortega-Villa, Ana M; Grieco, Megan C; Rubenstein,Kevin; Wang,Jing; Proschan, Michael A
  3. Statistics in Medicine. 2025, Jun; 44(13-14): e70157.
  1. 18.   Preclinical SC and IV repeat-dose toxicology of a cowpea mosaic virus - A cancer immunotherapy candidate
  2. Stern,Stephan; Affonso de Oliveira, Jessica Fernanda; Gatus, Jamie; Edmondson,Elijah; Dobrovolskaia,Marina; Steinmetz, Nicole F; Neun, Barry W
  3. Toxicology Reports. 2025, Jun; 14: 102022.
  1. 19.   Neovascular pruning by IDO1 inhibitors can potentiate immunogenic cytotoxicity of ischemia-targeted agents to synergistically enhance anti-PD-1 responsiveness
  2. Shen, Shih-Chun; Dey, Souvik; DuHadaway, James B; Sutanto-Ward, Erika; Hampton, Maurice T; Kozlov,Serguei; Prendergast, George C; Muller, Alexander J
  3. Journal for Immunotherapy of Cancer. 2025, May 30; 13(5):
  1. 20.   Phase 1 studies of the indenoisoquinolines LMP776 and LMP744 in patients with solid tumors and lymphomas
  2. O'Sullivan Coyne, Geraldine; Kummar, Shivaani; Rubinstein, Larry V; Wilsker,Deborah; Moore, Nancy; Hogu, Murielle; Piekarz, Richard; Covey, Joe; Beumer, Jan H; Ferry-Galow,Katherine; Villaruz, Liza C; Hollingshead,Melinda; Holleran, Julianne L; Deppas, Joshua J; Pommier, Yves; Ko, Brian; Johnson, Barry C; Parchhment, Ralph E; Ivy, Percy; Doroshow, James H; Chen, Alice P
  3. Cancer Chemotherapy and Pharmacology. 2025, May 29; 95(1): 58.
  1. 21.   Development of a workflow for in vitro on- and off-target cytotoxicity assessment of CAR T cell therapies to support first-in-human clinical trials: An orthogonal approach using human induced pluripotent stem cell-derived cells as a surrogate for normal vital organ systems
  2. Price,Shari; Zindel,Krista; Overcash,Justin; Glaze, Elizabeth; Eldridge, Sandy
  3. Current Research in Toxicology. 2025, May 28; 8: 100243.
  1. 22.   Animal farming and the oral microbiome in the Agricultural Health Study
  2. Chang, Vicky C; Purandare, Vaishnavi; Li, Shilan; Andreotti, Gabriella; Hua,Xing; Wan,Yunhu; Dagnall,Casey; Jones,Kristine; Hicks,Belynda; Hutchinson,Amy; Yano, Yukiko; Dalton, Kathryn R; Lee, Mikyeong; Parks, Christine G; London, Stephanie J; Sandler, Dale P; Gail, Mitchell H; Shi, Jianxin; Hofmann, Jonathan N; Sinha, Rashmi; Abnet, Christian C; Vogtmann, Emily; Beane Freeman, Laura E
  3. Environmental Research. 2025, May 26; 281: 121964.
  1. 23.   Association between prediagnostic serum metabolites and pancreatic ductal adenocarcinoma risk in two prospective cohorts
  2. Zhang, Ting; Moore, Steven C; Fu, Sheng; Wang,Xiaoyu; Albanes, Demetrius; Weinstein, Stephanie J; Yu, Kai; Stolzenberg-Solomon, Rachael Z
  3. International Journal of Cancer. 2025, May 22;
  1. 24.   Incidence and risk factors for tuberculosis at a rural HIV clinic in Uganda, 2012-2019; A retrospective cohort study
  2. Sendagire, Ibrahim; Ssempijja,Victor; Ndyanabo, Anthony; Ssettuba, Absalom; Mawanda, Annie N; Nakigozi, Gertrude; Lukoye, Deus; Fitzmaurice, Arthur G; Muhindo, Richard; Zawedde-Muyanja, Stella; Reynolds, Steven J
  3. BMC Public Health. 2025, May 22; 25(1): 1882.
  1. 25.   Mapping chromatin interactions at melanoma susceptibility loci uncovers distant cis-regulatory gene targets
  2. Thakur, Rohit; Xu, Mai; Sowards, Hayley; Yon, Joshuah; Jessop, Lea; Myers, Timothy; Zhang, Tongwu; Chari,Rajagopal; Long, Erping; Rehling, Thomas; Hennessey, Rebecca; Funderburk, Karen; Yin, Jinhu; Machiela, Mitchell J; Johnson, Matthew E; Wells, Andrew D; Chesi, Alessandra; Grant, Struan F A; Iles, Mark M; Landi, Maria Teresa; Law, Matthew H; Choi, Jiyeon; Brown, Kevin M
  3. American Journal of Human Genetics. 2025, May 16;
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