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  1. 1.   Duplicate entries in the Protein Data Bank: how to detect and handle them
  2. Wlodawer,Alexander; Dauter, Zbigniew; Rubach, Pawel; Minor, Wladek; Jaskolski, Mariusz; Jiang, Ziqiu; Jeffcott, William; Anosova, Olga; Kurlin, Vitaliy
  3. Acta Crystallographica. Section D, Structural Biology. 2025, Apr 01;
  1. 2.   Metabolic dependency mapping identifies Peroxiredoxin 1 as a driver of resistance to ATM inhibition
  2. Li, Haojian; Furusawa, Takashi; Cavero, Renzo; Xiao, Yunjie; Chari,Raj; Wu,Xiaolin; Sun, David; Hartmann, Oliver; Dhall, Anjali; Holewinski,Ronald; Andresson,Thorkell; Karim,Baktiar; Villamor-Payà, Marina; Gallardo, Devorah; Day, Chi-Ping; Pal, Lipika R; Nair, Nishanth Ulhas; Ruppin, Eytan; Aladjem, Mirit I; Pommier, Yves; Diefenbacher, Markus E; Lim, Jung Mi; Levine, Rodney L; Stracker, Travis H; Weyemi, Urbain
  3. Redox Biology. 2025, Jan 19; 80: 103503.
  1. 3.   A Mixed Methods Study of Medication Adherence in Adults with Neurofibromatosis Type 1 (NF1) on a Clinical Trial of Selumetinib
  2. Curlee, Millicent S; Toledo-Tamula, Mary Anne; Baker, Melissa; Wikstrom, Daniel; Harrison, Cynthia; Rhodes, Amanda; Fagan, Margaret; Tibery,Cecilia; Wolters, Pamela L; Widemann, Brigitte C; Gross, Andrea M; Martin, Staci
  3. Cancers. 2025, Jan 17; 17(2):
  1. 4.   The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A
  2. Kochen Rossi, Juan; Nuevo-Tapioles, Cristina; O'Keefe, Rachel A; Hunkeler, Moritz; Schmoker, Anna M; Fissore-O'Leary, Mercedes; Su, Wenjuan; Ahearn, Ian M; Branco, Cristina; Cheong, Hakyung; Esposito,Dom; Clotea, Ioana; Ueberheide, Beatrix; Fischer, Eric S; Philips, Mark R
  3. Cell Reports. 2024, Dec 19; 44(1): 115087.
  1. 5.   Affinity Tag-Free Purification of SARS-CoV-2 N Protein and Its Crystal Structure in Complex with ssDNA
  2. Maiti,Atanu; Matsuo,Hiroshi
  3. Biomolecules. 2024, Nov 30; 14(12):
  1. 6.   Impact of baseline SARS-CoV-2 load in plasma and upper airways on the incidence of acute extrapulmonary complications of COVID-19: a multicentric, prospective, cohort study
  2. Jensen, Tomas O; Harper, Katrina; Gupta, Shaili; Liu, Sean T; Dharan, Nila J; Baker, Jason V; Pett, Sarah L; Shaw-Saliba, Kathryn; Esmail, Aliasgar; Ho, Minh Q; Almasri, Eyad; Dewar,Robin; Lundgren, Jens; Vock, David M
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2024, Sep 13;
  1. 7.   Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities
  2. Desai, Parth; Takahashi, Nobuyuki; Kumar, Rajesh; Nichols, Samantha; Malin, Justin; Hunt, Allison; Schultz, Christopher; Cao, Yingying; Tillo, Desiree; Nousome, Darryl; Chauhan, Lakshya; Sciuto, Linda; Jordan, Kimberly; Rajapakse, Vinodh; Tandon, Mayank; Lissa, Delphine; Zhang, Yang; Kumar, Suresh; Pongor, Lorinc; Singh, Abhay; Schroder, Brett; Sharma, Ajit Kumar; Chang, Tiangen; Vilimas, Rasa; Pinkiert, Danielle; Graham, Chante; Butcher,Donna; Warner,Andrew; Sebastian, Robin; Mahon, Mimi; Baker, Karen; Cheng, Jennifer; Berger, Ann; Lake, Ross; Abel, Melissa; Krishnamurthy, Manan; Chrisafis, George; Fitzgerald, Peter; Nirula, Micheal; Goyal, Shubhank; Atkinson, Devon; Bateman, Nicholas W; Abulez, Tamara; Nair, Govind; Apolo, Andrea; Guha, Udayan; Karim,Baktiar; El Meskini,Rajaa; Ohler,Zoe; Jolly, Mohit Kumar; Schaffer, Alejandro; Ruppin, Eytan; Kleiner, David; Miettinen, Markku; Brown, G Tom; Hewitt, Stephen; Conrads, Thomas; Thomas, Anish
  3. Cell Reports. Medicine. 2024, Jun 18; 5(6): 101610.
  1. 8.   Unexpected tobacco etch virus (TEV) protease cleavage of recombinant human proteins
  2. Beaumont,Lauren; Mehalko,Jennifer; Johnson,Adam; Wall,Vanessa; Esposito,Dom
  3. Protein Expression and Purification. 2024, Apr 26; 220: 106488.
  1. 9.   Joint Associations of Pregnancy Complications and Postpartum Maternal Renal Biomarkers With Severe Cardiovascular Morbidities: A US Racially and Ethnically Diverse Prospective Birth Cohort Study
  2. Hong, Xiumei; Rosenberg, Avi Z; Heymann, Jurgen; Yoshida, Teruhiko; Waikar, Sushrut S; Ilori, Titilayo O; Wang, Guoying; Rebuck, Heather; Pearson, Colleen; Wang, Mei-Cheng; Winkler,Cheryl; Kopp, Jeffrey B; Wang, Xiaobin
  3. Journal of the American Heart Association. 2023, Nov 10; 12(22): e029311.
  1. 10.   Monoclonal Antibodies as SARS-CoV-2 Serology Standards: Experimental Validation and Broader Implications for Correlates of Protection
  2. Wang, Lili; Patrone, Paul N; Kearsley, Anthony J; Izac, Jerilyn R; Gaigalas, Adolfas K; Prostko, John C; Kwon, Hyung Joon; Tang, Weichun; Kosikova, Martina; Xie, Hang; Tian, Linhua; Elsheikh, Elzafir B; Kwee, Edward J; Kemp,Troy; Jochum, Simon; Thornburg, Natalie; McDonald, L Clifford; Gundlapalli, Adi V; Lin-Gibson, Sheng
  3. International Journal of Molecular Science. 2023, Oct 28; 24(21):
  1. 11.   A rapid HPV typing assay to support global cervical cancer screening and risk-based management: A cross-sectional study
  2. Inturrisi, Federica; de Sanjosé, Silvia; Desai, Kanan T; Dagnall,Casey; Egemen, Didem; Befano, Brian; Rodriguez, Ana Cecilia; Jeronimo, Jose A; Zuna, Rosemary E; Hoffman, Amanda; Farhat Nozzari, Sepideh; Walker, Joan L; Perkins, Rebecca B; Wentzensen, Nicolas; Palefsky, Joel M; Schiffman, Mark
  3. International Journal of Cancer. 2023, Sep 29;
  1. 12.   Delineation of functional subdomains of Huntingtin protein and their interaction with HAP40
  2. Alteen, Matthew G; Deme,Justin; Alvarez, Claudia P; Loppnau, Peter; Hutchinson, Ashley; Seitova, Alma; Chandrasekaran, Renu; Silva Ramos, Eduardo; Secker, Christopher; Alqazzaz, Mona; Wanker, Erich E; Lea, Susan M; Arrowsmith, Cheryl H; Harding, Rachel J
  3. Structure (London, England : 1993). 2023, Sep 7; 31
  1. 13.   Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
  2. Geffen, Yifat; Anand, Shankara; Akiyama, Yo; Yaron, Tomer M; Song, Yizhe; Johnson, Jared L; Govindan, Akshay; Babur, Özgün; Li, Yize; Huntsman, Emily; Wang, Liang-Bo; Birger, Chet; Heiman, David I; Zhang, Qing; Miller, Mendy; Maruvka, Yosef E; Haradhvala, Nicholas J; Calinawan, Anna; Belkin, Saveliy; Kerelsky, Alexander; Clauser, Karl R; Krug, Karsten; Satpathy, Shankha; Payne, Samuel H; Mani, D R; Gillette, Michael A; Dhanasekaran, Saravana M; Thiagarajan,Mathangi; Mesri, Mehdi; Rodriguez, Henry; Robles, Ana I; Carr, Steven A; Lazar, Alexander J; Aguet, François; Cantley, Lewis C; Ding, Li; Getz, Gad
  3. Cell. 2023, Aug 09;
  1. 14.   The largest HIV-1-infected T cell clones in children on long-term combination antiretroviral therapy contain solo LTRs
  2. Botha, Johannes C; Demirov,Dimiter; Gordijn, Carli; Katusiime, Mary Grace; Bale, Michael J; Wu,Xiaolin; Wells, Daria; Hughes,Stephen; Cotton, Mark F; Mellors, John W; Kearney, Mary F; van Zyl, Gert U
  3. mBio. 2023, Aug 02; e0111623.
  1. 15.   Imaging the cellular response to an antigen tagged interstrand crosslinking agent
  2. Bellani, Marina A; Huang, Jing; Zhang, Jing; Gali,Himabindu; Thazhathveetil, Arun Kalliat; Pokharel, Durga; Majumdar, Ishani; Shaik, Althaf; Seidman, Michael M
  3. DNA Repair. 2023, Jun 09; 128: 103525.
  1. 16.   HIV-1 usurps transcription start site heterogeneity of host RNA polymerase II to maximize replication fitness
  2. Nikolaitchik,Olga; Islam,Mohammad Saiful; Kitzrow,Jonathan; Duchon,Alice; Cheng,Zetao; Liu, Yang; Rawson, Jonathan M O; Shao,Wei; Nikolaitchik, Maria; Kearney,Mary; Maldarelli,Frank; Musier-Forsyth, Karin; Pathak,Vinay; Hu,Wei-Shau
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jun 06; 120(23): e2305103120.
  1. 17.   Evaluating point-prediction uncertainties in neural networks for protein-ligand binding prediction
  2. Fan, Ya Ju; Allen, Jonathan E; McLoughlin, Kevin S; Shi, Da; Bennion, Brian J; Zhang, Xiaohua; Lightstone, Felice C
  3. Artificial Intelligence Chemistry. 2023, Jun; 1(1):
  1. 18.   Reproducibility metrics for context-specific CRISPR screens
  2. Billmann, Maximilian; Ward, Henry N; Aregger,Michael; Costanzo, Michael; Andrews, Brenda J; Boone, Charles; Moffat, Jason; Myers, Chad L
  3. Cell Systems. 2023, May 17; 14(5): 418-422.e2.
  1. 19.   Highlights from the Tenth International Workshop on HIV Persistence during Therapy, December 13-16, 2022, Miami, Florida-USA
  2. Archin, N; Bar, K J; Burdo, T; Caskey, M; Chahroudi, A; Farzan, M; Ho, Y-C; Jones, R B; Kearney,Mary; Kuritzkes, D; Margolis, D; Martinez-Picado, J; Okoye, A; Salgado, M; Stevenson, Mario
  3. Journal of Virus Eradication. 2023, Mar; 9(1): 100315.
  1. 20.   Deep-Learning-Based Whole-Lung and Lung-Lesion Quantification Despite Inconsistent Ground Truth: Application to Computerized Tomography in SARS-CoV-2 Nonhuman Primate Models
  2. Reza, Syed M S; Chu, Winston T; Homayounieh, Fatemeh; Blain, Maxim; Firouzabadi, Fatemeh D; Anari, Pouria Y; Lee, Ji Hyun; Worwa, Gabriella; Finch, Courtney L; Kuhn, Jens H; Malayeri, Ashkan; Crozier,Ian; Wood, Bradford J; Feuerstein, Irwin M; Solomon,Jeffrey
  3. Academic Radiology. 2023, Feb 27;
  1. 21.   Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy
  2. Lian, Xiaodong; Seiger, Kyra W; Parsons, Elizabeth M; Gao, Ce; Sun, Weiwei; Gladkov, Gregory T; Roseto, Isabelle C; Einkauf, Kevin B; Osborn, Matthew R; Chevalier, Joshua M; Jiang, Chenyang; Blackmer, Jane; Carrington,Mary; Rosenberg, Eric S; Lederman, Michael M; McMahon, Deborah K; Bosch, Ronald J; Jacobson, Jeffrey M; Gandhi, Rajesh T; Peluso, Michael J; Chun, Tae-Wook; Deeks, Steven G; Yu, Xu G; Lichterfeld, Mathias
  3. Cell Host & Microbe. 2022, Dec 28; 31
  1. 22.   Heat Shock Protein Family A Member 1 Promotes Intracellular Amplification of Hepatitis B Virus Covalently Closed Circular DNA
  2. Tang, Liudi; An,Ping; Zhao, Qiong; Winkler,Cheryl; Chang, Jinhong; Guo, Ju-Tao
  3. Journal of Virology. 2022, Dec 15; e0126122.
  1. 23.   Mapping the KRAS Proteoform Landscape in Colorectal Cancer Identifies Truncated KRAS4B that Decreases MAPK Signaling
  2. Adams, Lauren M; Dehart,Caroline; Drown, Bryon S; Anderson, Lissa C; Bocik,William; Boja, Emily S; Hiltke, Tara M; Hendrickson, Christopher L; Rodriguez, Henry; Caldwell, Michael; Vafabakhsh, Reza; Kelleher, Neil L
  3. The Journal of Biological Chemistry. 2022, Dec 02; 299(1): 102768.
  1. 24.   Antisense pairing and SNORD13 structure guide RNA cytidine acetylation
  2. Thalalla Gamage,Supuni; Bortolin-Cavaillé, Marie-Line; Link, Courtney; Bryson, Keri; Sas-Chen, Aldema; Schwartz, Schraga; Cavaillé, Jérôme; Meier,Jordan
  3. RNA (New York, N.Y.). 2022, Sep 20;
  1. 25.   Adaptation of HIV-1/HIV-2 Chimeras with Defects in Genome Packaging and Viral Replication
  2. Rawson, Jonathan M O; Nikolaitchik,Olga; Yoo, Jennifer A; Somoulay, Xayathed; Brown, Matthew A; Mbuntcha Bogni, Franck S; Pathak,Vinay; Soheilian,Ferri; Slack, Ryan L; Sarafianos, Stefan G; Hu,Wei-Shau
  3. mBio. 2022, Aug 29; e0222022.
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