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  1. 1.   Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy
  2. Lian, Xiaodong; Seiger, Kyra W; Parsons, Elizabeth M; Gao, Ce; Sun, Weiwei; Gladkov, Gregory T; Roseto, Isabelle C; Einkauf, Kevin B; Osborn, Matthew R; Chevalier, Joshua M; Jiang, Chenyang; Blackmer, Jane; Carrington,Mary; Rosenberg, Eric S; Lederman, Michael M; McMahon, Deborah K; Bosch, Ronald J; Jacobson, Jeffrey M; Gandhi, Rajesh T; Peluso, Michael J; Chun, Tae-Wook; Deeks, Steven G; Yu, Xu G; Lichterfeld, Mathias
  3. Cell Host & Microbe. 2022, Dec 28; 31
  1. 2.   Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats
  2. Joseph, Kevin W; Halvas, Elias K; Brandt, Leah D; Patro,Sean; Rausch,Jason; Chopra, Abha; Mallal, Simon; Kearney,Mary; Coffin, John M; Mellors, John W
  3. Journal of Virology. 2022, Jun 08; e0012222.
  1. 3.   Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR
  2. Brandt, Leah D; Guo,Amber; Joseph, Kevin W; Jacobs, Jana L; Naqvi, Asma; Coffin, John M; Kearney,Mary; Halvas, Elias K; Wu,Xiaolin; Hughes,Stephen; Mellors, John W
  3. Viruses. 2021, Jul; 13(7):
  1. 4.   Early Emergence and Long-Term Persistence of HIV-Infected T-Cell Clones in Children
  2. Bale, Michael J.; Katusiime, Mary Grace; Wells, Daria; Wu, Xiaolin; Spindler, Jonathan; Halvas, Elias K.; Cyktor, Joshua C.; Wiegand, Ann; Shao, Wei; Cotton, Mark F.; Hughes, Stephen H.; Mellors, John W.; Coffin, John M.; Van Zyl, Gert U.; Kearney, Mary F.
  3. mBio. 2021, Apr 8 ; 12(2):
  1. 5.   Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors
  2. Patro,Sean; Brandt, Leah D; Bale,Michael; Halvas, Elias K; Joseph, Kevin W; Shao,Wei; Wu,Xiaolin; Guo,Amber; Murrell, Ben; Wiegand,Ann; Spindler,Jon; Raley, Castle; Hautman, Christopher; Sobolewski, Michele; Fennessey,Christine; Hu,Wei-Shau; Luke,Brian; Hasson,Jenna; Niyongabo,Aurelie; Capoferri,Adam; Keele,Brandon; Milush, Jeff; Hoh, Rebecca; Deeks, Steven G; Maldarelli,Frank; Hughes,Stephen; Coffin, John M; Rausch,Jason; Mellors, John W; Kearney,Mary
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, Dec 17; 116(51): 25891-25899.
  1. 6.   Autologous, Gene-Modified Hematopoietic Stem and Progenitor Cells Repopulate the Central Nervous System with Distinct Clonal Variants
  2. Peterson, Christopher W; Adair, Jennifer E; Wohlfahrt, Martin E; Deleage,Claire; Radtke, Stefan; Rust, Blake; Norman, Krystin K; Norgaard, Zachary K; Schefter, Lauren E; Sghia-Hughes, Gabriella M; Repetto, Andrea; Baldessari, Audrey; Murnane, Robert D; Estes,Jake; Kiem, Hans-Peter
  3. Stem cell reports. 2019, Jul 9; 13(1): 91-104.
  1. 7.   Next-generation in situ hybridization approaches to define and quantify HIV and SIV reservoirs in tissue microenvironments
  2. Deleage, Claire; Chan, Chi N.; Busman-Sahay, Kathleen; Estes, Jake
  3. Retrovirology. 2018, Jan 9; 15(1): 4.
  1. 8.   XMRV and prostate cancer-a 'final' perspective
  2. Sfanos, K. S.; Aloia, A. L.; De Marzo, A. M.; Rein, A.
  3. Nature Reviews Urology. 2012, Feb; 9(2): 111-118.
  1. 9.   Potential genotoxicity from integration sites in CLAD dogs treated successfully with gammaretroviral vector-mediated gene therapy
  2. Hai, M.; Adler, R.; Bauer, T. R.; Tuschong, L. M.; Gu, Y. C.; Wu, X.; Hickstein, D. D.
  3. Gene Therapy. 2008 15(14): 1067-1071.
  1. 10.   MicroRNAs and genomic instability
  2. Huppi, K.; Volfovsky, N.; Mackiewicz, M.; Runfola, T.; Jones, T. L.; Martin, S. E.; Stephens, R.; Caplen, N. J.
  3. Seminars in Cancer Biology. 2007, Feb; 17(1): 65-73.
  1. 11.   A probability model predicting initiation efficiency of retroviral vectors with two primer-binding sites
  2. Voronin, Y. A.; Sidorov, I. A.; Pathak, V. K.
  3. Journal of Theoretical Biology. 2006, Sep; 242(2): 347-355.
  1. 12.   Analysis of vector genome integration sites in various tissues following systemic administration of AAV serotype 8 vector in mice
  2. Inagaki, K.; Wu, X. L.; Fuess, S.; Storm, T. A.; Kay, M. A.; Nakai, H.
  3. Journal of Gene Medicine. 2006, MAR; 8(3): 391, Abstract 52-391, Abstract 52.
  1. 13.   Sox4 cooperates with Evi1 in AKXD-23 myeloid tumors via transactivation of proviral LTR
  2. Boyd, K. E.; Xiao, Y. Y.; Fan, K.; Poholek, A.; Copeland, N. G.; Jenkins, N. A.; Perkins, A. S.
  3. Blood. 2006, JAN 15; 107(2): 733-741.
  1. 14.   Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands
  2. Chen, Z. H.; Schneider, T. D.
  3. Nucleic Acids Research. 2006 34(4): 1133-1147.
  1. 15.   Simian immunodeficiency virus integration preference is similar to that of human immunodeficiency virus type 1
  2. Crise, B.; Li, Y.; Yuan, C. C.; Morcock, D. R.; Whitby, D.; Munroe, D. J.; Arthur, L. O.; Wu, X. L.
  3. Journal of Virology. 2005, OCT; 79(19): 12199-12204.
  1. 16.   Recurrent retroviral vector integration at the Mds1/Evi1 locus in nonhuman primate hematopoietic cells
  2. Calmels, B.; Ferguson, C.; Laukkanen, M. O.; Adler, R.; Faulhaber, M.; Kim, H. J.; Sellers, S.; Hematti, P.; Schmidt, M.; von Kalle, C.; Akagi, K.; Donahue, R. E.; Dunbar, C. E.
  3. Blood. 2005, OCT 1; 106(7): 2530-2533.
  1. 17.   Activation of the Jun N-terminal kinase pathway by friend spleen focus-forming virus and its role in the growth and survival of friend virus-induced erythroleukemia cells
  2. Nishigaki, K.; Hanson, C.; Thompson, D.; Yugawa, T.; Ruscetti, S.
  3. Journal of Virology. 2005, OCT; 79(20): 12752-12762.
  1. 18.   Large-scale molecular characterization of adeno-associated virus vector integration in mouse liver
  2. Nakai, H.; Wu, X. L.; Fuess, S.; Storm, T. A.; Munroe, D.; Montini, E.; Burgess, S. M.; Grompe, M.; Kay, M. A.
  3. Journal of Virology. 2005, MAR; 79(6): 3606-3614.
  1. 19.   Integration target site selection for retroviruses and transposable elements
  2. Wu, X.; Burgess, S. M.
  3. Cellular and Molecular Life Sciences. 2004, OCT; 61(19-20): 2588-2596.
  1. 20.   RTCGD: retroviral tagged cancer gene database
  2. Akagi, K.; Suzuki, T.; Stephens, R. M.; Jenkins, N. A.; Copeland, N. G.
  3. Nucleic Acids Research. 2004 32(Sp. Iss., Database Issue): D523-D527.
  1. 21.   Early B-cell factor-associated zinc-finger gene is a frequent target of retroviral integration in murine B-cell lymphomas
  2. Warming, S.; Suzuki, T.; Yamaguchi, T. P.; Jenkins, N. A.; Copeland, N. G.
  3. Oncogene. 2004 23(15): 2727-2731.
  1. 22.   Molecular analysis of a recombinant M-MuLV/RaLV retrovirus
  2. Villanueva, R. A.; Campbell, S.; Roth, M. J.
  3. Virology. 2003 315(1): 195-208.
  1. 23.   Activation of the Rap1 guanine nucleotide exchange gene, CalDAG-GEF I, in BXH-2 murine myeloid leukemia
  2. Dupuy, A. J.; Morgan, K.; von Lintig, F. C.; Shen, H. F.; Acar, H.; Hasz, D. E.; Jenkins, N. A.; Copeland, N. G.; Boss, G. R.; Largaespada, D. A.
  3. Journal of Biological Chemistry. 2001 276(15): 11804-11811.
  1. 24.   Evi27 encodes a novel membrane protein with homology to the IL17 receptor
  2. Tian, E. M.; Sawyer, J. R.; Largaespada, D. A.; Jenkins, N. A.; Copeland, N. G.; Shaughnessy, J. D.
  3. Oncogene. 2000 19(17): 2098-2109.
  1. 25.   Quality Control of an Isogenic H/N/KRAS-Less Mouse Embryonic Fibroblast Cell Line Panel
  2. Xu,Bingfang; Powell,Katie
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2797: 337-350.
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