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  1. 1.   ShiftScan: A tool for rapid analysis of high-throughput differential scanning fluorimetry data and compound prioritization
  2. Waterworth, Samantha C; Shenoy, Shilpa R; Sharma, Nirmala D; Wolcott,Chris; Donohue,Duncan; O'Keefe,Barry; Beutler,John
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70055.
  1. 2.   HIF1a Plays a Crucial Role in the Development of TFE3-Rearranged Renal Cell Carcinoma by Orchestrating a Metabolic Shift Toward Fatty Acid Synthesis
  2. Nishizawa, Hidekazu; Funasaki, Shintaro; Ma, Wenjuan; Kubota, Yoshiaki; Watanabe, Kazuhide; Arima, Yuichiro; Kuroda, Shoichiro; Ito, Takaaki; Furuya, Mitsuko; Motoshima, Takanobu; Nishiyama, Akira; Mehanna, Sally; Satou, Yorifumi; Hasumi, Hisashi; Jikuya, Ryosuke; Makiyama, Kazuhide; Tamura, Tomohiko; Oike, Yuichi; Tanaka, Yasuhito; Suda, Toshio; Schmidt,Laura; Linehan, W Marston; Baba, Masaya; Kamba, Tomomi
  3. Genes to Cells : devoted to molecular & cellular mechanisms. 2025, Jan; 30(1): e13195.
  1. 3.   Insights into gemcitabine resistance in pancreatic cancer: association with metabolic reprogramming and TP53 pathogenicity in patient derived xenografts
  2. Konaté, Mariam M; Krushkal, Julia; Li, Ming-Chung; Chen, Li; Kotliarov, Yuri; Palmisano, Alida; Pauly,Rini; Xie, Qian; Williams, P Mickey; McShane, Lisa M; Zhao, Yingdong
  3. Journal of Translational Medicine. 2024, Aug 05; 22(1): 733.
  1. 4.   Transcription factor Tox2 is required for metabolic adaptation and tissue residency of ILC3 in the gut
  2. Das, Arundhoti; Martinez-Ruiz, Gustavo Ulises; Bouladoux, Nicolas; Stacy, Apollo; Moraly, Josquin; Vega-Sendino, Maria; Zhao, Yongge; Lavaert, Marieke; Ding, Yi; Morales-Sanchez, Abigail; Harly, Christelle; Seedhom, Mina O; Chari,Raj; Awasthi, Parirokh; Ikeuchi, Tomoko; Wang, Yueqiang; Zhu, Jinfang; Moutsopoulos, Niki M; Chen, WanJun; Yewdell, Jonathan W; Shapiro, Virginia Smith; Ruiz, Sergio; Taylor, Naomi; Belkaid, Yasmine; Bhandoola, Avinash
  3. Immunity. 2024, May 14; 57(5): 1019-1036.
  1. 5.   The association between single-nucleotide polymorphisms within type 1 interferon pathway genes and human immunodeficiency virus type 1 viral load in antiretroviral-naïve participants
  2. Mørup, Sara Bohnstedt; Leung, Preston; Reilly, Cavan; Sherman,Brad; Chang,Weizhong; Milojevic, Maja; Milinkovic, Ana; Liappis, Angelike; Borgwardt, Line; Petoumenos, Kathy; Paredes, Roger; Mistry, Shweta S; MacPherson, Cameron R; Lundgren, Jens; Helleberg, Marie; Reekie, Joanne; Murray, Daniel D
  3. AIDS Research and Therapy. 2024, May 03; 21(1): 27.
  1. 6.   Novel subtypes of severe COVID-19 respiratory failure based on biological heterogeneity: a secondary analysis of a randomized controlled trial
  2. Alipanah-Lechner, Narges; Hurst-Hopf, James; Delucchi, Kevin; Swigart, Lamorna; Willmore, Andrew; LaCombe, Benjamin; Dewar,Robin; Lane, H Clifford; Lallemand, Perrine; Liu, Kathleen D; Esserman, Laura; Matthay, Michael A; Calfee, Carolyn S
  3. Critical Care (London, England). 2024, Feb 21; 28(1): 56.
  1. 7.   Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients
  2. Radtke, Andrea J; Postovalova, Ekaterina; Varlamova, Arina; Bagaev, Alexander; Sorokina, Maria; Kudryashova, Olga; Meerson, Mark; Polyakova, Margarita; Galkin, Ilia; Svekolkin, Viktor; Isaev, Sergey; Wiebe, Daniil; Sharun, Anna; Sarachakov, Alexander; Perelman, Grigory; Lozinsky, Yaroslav; Yaniv, Ziv; Lowekamp, Bradley C; Speranza, Emily; Yao, Li; Pittaluga, Stefania; Shaffer, Arthur L; Jonigk, Danny; Phelan, James D; Davies-Hill, Theresa; Huang, Da Wei; Ovcharov, Pavel; Nomie, Krystle; Nuzhdina, Ekaterina; Kotlov, Nikita; Ataullakhanov, Ravshan; Fowler, Nathan; Kelly,Michael; Muppidi, Jagan; Davis, Jeremy L; Hernandez, Jonathan M; Wilson, Wyndham H; Jaffe, Elaine S; Staudt, Louis M; Roschewski, Mark; Germain, Ronald N
  3. Cancer Cell. 2024, Feb 21; 42
  1. 8.   Clinical and molecular characterization of children and adults with respiratory bocavirus infection in Mexico: a cross-sectional nested study within the ILI002 prospective observational study
  2. Gamiño-Arroyo, Ana Estela; Arellano-Galindo, José; Del Carmen Guerra-de-Blas, Paola; Ortega-Villa, Ana M; Mateja,Allyson; Llamosas-Gallardo, Beatriz; Ortíz-Hernández, Ana A; Valdéz-Vázquez, Rafael; Ramírez-Venegas, Alejandra; Galindo-Fraga, Arturo; Guerrero, Ma Lourdes; Ramos-Cervantes, Pilar; Mendoza-Garcés, Luis; González-Matus, Mónica; Marroquín-Rojas, Carmen; Xicohtencatl-Cortes, Juan; Ochoa, Sara A; Cruz-Córdova, Ariadna; Powers,John; Ruiz-Palacios, Guillermo Miguel; Beigel, John; Moreno-Espinosa, Sarbelio
  3. Lancet Regional Health. Americas. 2024, Jan; 29: 100647.
  1. 9.   Quantitation of Active Pharmaceutical Ingredients in Polymeric Drug Products Using Elemental Analysis
  2. Xu,Jie; Hu, Yingwen; Clogston,Jeffrey
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2789: 35-43.
  1. 10.   Viral escape mutations do not account for non-protection from SIVmac239 challenge in RhCMV/SIV vaccinated rhesus macaques
  2. Bimber, Benjamin N; Sunshine, Justine; McElfresh, G W; Reed, Jason S; Pathak, Reese; Bateman, Katherine B; Hughes, Colette M; Gilbride, Roxanne M; Ford, Julia C; Morrow, David; Lifson,Jeffrey; Sacha, Jonah B; Hansen, Scott G; Picker, Louis J
  3. Frontiers in Immunology. 2024 15: 1444621.
  1. 11.   SARS-CoV-2 papain-like protease (PLpro) plays multiple roles in regulating cellular proteins in the endoplasmic reticulum
  2. Yang,Mei; Mariano,Jennifer; Su, Rebecca; Smith, Christopher E; Das,Sudipto; Gill, Catherine; Andresson,Thorkell; Loncarek,Jadranka; Tsai,Yien Che; Weissman,Allan
  3. The Journal of Biological Chemistry. 2023, Dec; 299(12): 105346.
  1. 12.   PIM1 targeted degradation prevents the emergence of chemoresistance in prostate cancer
  2. Torres-Ayuso, Pedro; Katerji,Meghri; Mehlich, Dawid; Lookingbill, Sophia A; Sabbasani, Venkata R; Liou, Hope; Casillas, Andrea L; Chauhan, Shailender S; Serwa, Remigiusz; Rubin,Maxine; Marusiak, Anna A; Swenson, Rolf E; Warfel, Noel A; Brognard,John
  3. Cell Chemical Biology. 2023, Nov 16;
  1. 13.   Gene network landscape of mouse splenocytes reveals integrin complex as the A151 ODN-responsive hub molecule in the immune transcriptome
  2. Yazar, Volkan; Yilmaz, Ismail Cem; Bulbul, Artun; Klinman, Dennis M; Gursel, Ihsan
  3. Molecular Therapy. Nucleic Acids. 2023, Mar 14; 31: 553-565.
  1. 14.   Longitudinal association between executive function and academic achievement in children with neurofibromatosis type 1 and plexiform neurofibromas
  2. Hou, Yang; Wu, Xian; Allen, Taryn; Tamula,Mary Anne; Martin, Staci; Gillespie, Andy; Goodwin, Anne; Widemann, Brigitte C; Wolters, Pamela L
  3. Journal of the International Neuropsychological Society : JINS. 2023, Feb 08; 1-11.
  1. 15.   Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States
  2. Kassaye, Seble G; Grossman, Zehava; Vengurlekar, Priyanka; Chai, William; Wallace, Megan; Rhee, Soo-Yon; Meyer, William A; Kaufman, Harvey W; Castel, Amanda; Jordan, Jeanne; Crandall, Keith A; Kang, Alisa; Kumar, Princy; Katzenstein, David A; Shafer, Robert W; Maldarelli,Frank
  3. Viruses. 2022, Dec 25; 15(1):
  1. 16.   Feline Leukemia Virus Frequently Spills Over from Domestic Cats to North American Pumas
  2. Petch, Raegan J; Gagne, Roderick B; Chiu, Elliott; Mankowski, Clara; Rudd, Jaime; Roelke-Parker,Melody; Vickers, T Winston; Logan, Kenneth A; Alldredge, Mathew; Clifford, Deana; Cunningham, Mark W; Onorato, Dave; VandeWoude, Sue
  3. Journal of Virology. 2022, Dec 14; 96(23): e0120122.
  1. 17.   An in vitro and computational validation of a novel loss-of-functional mutation in PAX9 associated with non-syndromic tooth agenesis
  2. Sarkar,Tanmoy; Ranjan, Prashant; Kanathur, Smitha; Gupta, Ankush; Das, Parimal
  3. Molecular Genetics and Genomics : MGG. 2022, Nov 14;
  1. 18.   Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma
  2. Li, Qing Kay; Hu, Yingwei; Chen, Lijun; Schnaubelt, Michael; Cui Zhou, Daniel; Li, Yize; Lu, Rita Jui-Hsien; Thiagarajan,Mathangi; Hostetter, Galen; Newton, Chelsea J; Jewell, Scott D; Omenn, Gil; Robles, Ana I; Mesri, Mehdi; Bathe, Oliver F; Zhang, Bing; Ding, Li; Hruban, Ralph H; Chan, Daniel W; Zhang, Hui
  3. Clinical proteomics. 2022, Oct 20; 19(1): 36.
  1. 19.   Study of Ren, RexA, and RexB Functions Provides Insight Into the Complex Interaction Between Bacteriophage ? and Its Host, Escherichia coli
  2. Thomason,Lynn; Court,Don
  3. PHAGE (New Rochelle, N.Y.). 2022, Sep 01; 3(3): 153-164.
  1. 20.   Rhabdomyolysis-induced acute kidney injury and concomitant apoptosis induction via ROS-mediated ER stress is efficaciously counteracted by epigallocatechin gallate
  2. Chang,Sukkum; Haroon, Muhammad; Dey, Debasish Kumar; Kang, Sun Chul
  3. The Journal of Nutritional Biochemistry. 2022, Aug 23; 109134.
  1. 21.   Conformational Dynamics Allows Sampling of an "Active-like" State by Oncogenic K-Ras-GDP
  2. Grudzien, Patrick; Jang,Hyunbum; Leschinsky, Nicholas; Nussinov,Ruth; Gaponenko, Vadim
  3. Journal of Molecular Biology. 2022, Jun 22; 167695.
  1. 22.   Disruption of the lipolysis pathway results in stem cell death through a sterile immunity-like pathway in adult Drosophila
  2. Aggarwal,Poonam; Liu, Zilun; Cheng, Guang Qian; Singh,Shree Ram; Shi,Chunmei; Chen, Ying; Sun, Ling V; Shi,Chunmei
  3. Cell Reports. 2022, Jun 21; 39(12): 110958.
  1. 23.   The interaction of spongistatin 1 with tubulin
  2. Bai,Ruoli; Smith, Amos B; Pettit, George R; Hamel,Ernest
  3. Archives of Biochemistry and Biophysics. 2022, May 17; 109296.
  1. 24.   A phenotypic signature that identifies neoantigen-reactive T cells in fresh human lung cancers
  2. Hanada, Ken-Ichi; Zhao, Chihao; Gil-Hoyos, Raul; Gartner, Jared J; Chow-Parmer, Christopher; Lowery, Frank J; Krishna, Sri; Prickett, Todd D; Kivitz, Scott; Parkhurst, Maria R; Wong,Nathan; Rae, Zachary; Kelly, Michael C; Goff, Stephanie L; Robbins, Paul F; Rosenberg, Steven A; Yang, James C
  3. Cancer Cell. 2022, Apr 13;
  1. 25.   Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach
  2. Smith, Kyle P; Lee, Woonghee; Tonelli, Marco; Lee, Yeongjoon; Light, Samuel H; Cornilescu,Gabriel; Chakravarthy, Srinivas
  3. Protein Science : a Publication of the Protein Society. 2022, Feb 08; 31(5):
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