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  1. 1.   Two hearts beat as one: the debate over RAS dimers continues
  2. Stephen,Andy
  3. Trends in Biochemical Sciences. 2024, Nov; 49(11): 933-935.
  1. 2.   Longitudinal analysis of the lung proteome reveals persistent repair months after mild to moderate COVID-19
  2. Kanth, Shreya M; Huapaya, Julio A; Gairhe, Salina; Wang, Honghui; Tian, Xin; Demirkale, Cumhur Y; Hou, Chunyan; Ma, Junfeng; Kuhns,Doug; Fink,Dani; Malayeri, Ashkan; Turkbey, Evrim; Harmon, Stephanie A; Chen, Marcus Y; Regenold, David; Lynch, Nicolas F; Ramelli, Sabrina; Li, Willy; Krack, Janell; Kuruppu, Janaki; Lionakis, Michail S; Strich, Jeffrey R; Davey, Richard; Childs, Richard; Chertow, Daniel S; Kovacs, Joseph A; Parizi, Parizad Torabi-; Suffredini, Anthony F
  3. Cell Reports. Medicine. 2024, Jul 16; 5(7): 101642.
  1. 3.   Mosaic quadrivalent influenza vaccine single nanoparticle characterization
  2. Yang, Rong Sylvie; Traver, Maria; Barefoot, Nathan; Stephens, Tyler; Alabanza, Casper; Manzella-Lapeira, Javier; Zou, Guozhang; Wolff, Jeremy; Li, Yile; Resto, Melissa; Shadrick, William; Yang, Yanhong; Ivleva, Vera B; Tsybovsky,Yaroslav; Carlton, Kevin; Brzostowski, Joseph; Gall, Jason G; Lei, Q Paula
  3. Scientific Reports. 2024, Feb 24; 14(1): 4534.
  1. 4.   Lessons learned: establishing a CLIA-equivalent laboratory for targeted mass spectrometry assays - navigating the transition from research to clinical practice
  2. Han, Chia-Li; Lai, Chi-Ting; Reyes, Aaron James; Yang, Hao-Chin; Lu, Jin-Ying; Shih, Shyang-Rong; Chen, Kuen-Yuan; Hoofnagle, Andrew N; Yu, Sung-Liang; Bocik, William; Hiltke, Tara; Chiu, Huan-Chi; Wan, Ching-Yi; Rodriguez, Henry; Zhang, Victoria; Chen, Yu-Ju
  3. Clinical Proteomics. 2024, Feb 22; 21(1): 12.
  1. 5.   A proteomic atlas of glypican-3 interacting partners: Identification of alpha-fetoprotein and other extracellular proteins as potential immunotherapy targets in liver cancer
  2. Zhang, Yi-Fan; Lin, Shaoli; Zhen, Xiao; Ho, Mitchell
  3. Proteoglycan Research. 2024, Oct-Dec; 2(4):
  1. 6.   SARS-CoV-2 papain-like protease (PLpro) plays multiple roles in regulating cellular proteins in the endoplasmic reticulum
  2. Yang,Mei; Mariano,Jennifer; Su, Rebecca; Smith, Christopher E; Das,Sudipto; Gill, Catherine; Andresson,Thorkell; Loncarek,Jadranka; Tsai,Yien Che; Weissman,Allan
  3. The Journal of Biological Chemistry. 2023, Dec; 299(12): 105346.
  1. 7.   Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
  2. Geffen, Yifat; Anand, Shankara; Akiyama, Yo; Yaron, Tomer M; Song, Yizhe; Johnson, Jared L; Govindan, Akshay; Babur, Özgün; Li, Yize; Huntsman, Emily; Wang, Liang-Bo; Birger, Chet; Heiman, David I; Zhang, Qing; Miller, Mendy; Maruvka, Yosef E; Haradhvala, Nicholas J; Calinawan, Anna; Belkin, Saveliy; Kerelsky, Alexander; Clauser, Karl R; Krug, Karsten; Satpathy, Shankha; Payne, Samuel H; Mani, D R; Gillette, Michael A; Dhanasekaran, Saravana M; Thiagarajan,Mathangi; Mesri, Mehdi; Rodriguez, Henry; Robles, Ana I; Carr, Steven A; Lazar, Alexander J; Aguet, François; Cantley, Lewis C; Ding, Li; Getz, Gad
  3. Cell. 2023, Aug 09;
  1. 8.   Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma
  2. Li, Qing Kay; Hu, Yingwei; Chen, Lijun; Schnaubelt, Michael; Cui Zhou, Daniel; Li, Yize; Lu, Rita Jui-Hsien; Thiagarajan,Mathangi; Hostetter, Galen; Newton, Chelsea J; Jewell, Scott D; Omenn, Gil; Robles, Ana I; Mesri, Mehdi; Bathe, Oliver F; Zhang, Bing; Ding, Li; Hruban, Ralph H; Chan, Daniel W; Zhang, Hui
  3. Clinical proteomics. 2022, Oct 20; 19(1): 36.
  1. 9.   Antiretroviral drug exposure in lymph nodes is heterogeneous and drug dependent
  2. Rosen, Elias P; Deleage,Claire; White, Nicole; Sykes, Craig; Edwards,Catherine; Adamson, Lourdes; Luciw, Paul; Estes, Jacob D; Kashuba, Angela D M
  3. Journal of the International AIDS Society. 2022, Apr; 25(4): e25895.
  1. 10.   Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens
  2. Whiteaker, Jeffrey R; Lundeen, Rachel A; Zhao, Lei; Schoenherr, Regine M; Burian, Aura; Huang, Dongqing; Voytovich, Ulianna; Wang, Tao; Kennedy, Jacob J; Ivey, Richard G; Lin, Chenwei; Murillo, Oscar D; Lorentzen, Travis D; Thiagarajan,Mathangi; Colantonio,Simona; Caceres,Tessa; Roberts,Rhonda; Knotts,Joseph; Reading,Joshua; Kaczmarczyk,Jan; Richardson, Christopher W; Garcia-Buntley,Stephanie; Bocik,William; Hewitt, Stephen M; Murray, Karen E; Do, Nhan; Brophy, Mary; Wilz, Stephen W; Yu, Hongbo; Ajjarapu, Samuel; Boja, Emily; Hiltke, Tara; Rodriguez, Henry; Paulovich, Amanda G
  3. Frontiers in immunology. 2021, Nov 11; 12
  1. 11.   Development and validation of an LC-MS/MS generic assay platform for small molecule drug bioanalysis
  2. Parise, Robert A; Covey, Joseph M; Hollingshead,Melinda; Srivastava,Apurva; Synold, Timothy W; Beumer, Jan H
  3. Journal of pharmaceutical and biomedical analysis. 2021, Sep 5; 203: 114185.
  1. 12.   Refining the N-Termini of the SARS-CoV-2 Spike Protein and Its Discrete Receptor-Binding Domain
  2. D'Ippolito,Robert; Drew,Matt; Mehalko,Jennifer; Snead,Kelly; Wall,Vanessa; Putman,Zoe; Esposito,Dom; Dehart,Caroline
  3. Journal of proteome research. 2021, Sep 3; 20: 4427-4434.
  1. 13.   A Molecular Networking Strategy: High-Throughput Screening and Chemical Analysis of Brazilian Cerrado Plant Extracts against Cancer Cells
  2. Cortelo, Patricia C.; Demarque, Daniel P.; Dusi, Renata G.; Albernaz, Lorena C.; Braz-Filho, Raimundo; Goncharova, Ekaterina I.; Bokesch, Heidi R.; Gustafson, Kirk R.; Beutler, John A.; Espindola, Laila S.
  3. Cells. 2021, Mar; 10(3):
  1. 14.   Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
  2. Krug, Karsten; Jaehnig, Eric J; Satpathy, Shankha; Blumenberg, Lili; Karpova, Alla; Anurag, Meenakshi; Miles, George; Mertins, Philipp; Geffen, Yifat; Tang, Lauren C; Heiman, David I; Cao, Song; Maruvka, Yosef E; Lei, Jonathan T; Huang, Chen; Kothadia, Ramani B; Colaprico, Antonio; Birger, Chet; Wang, Jarey; Dou, Yongchao; Wen, Bo; Shi, Zhiao; Liao, Yuxing; Wiznerowicz, Maciej; Wyczalkowski, Matthew A; Chen, Xi Steven; Kennedy, Jacob J; Paulovich, Amanda G; Thiagarajan,Mathangi; Kinsinger, Christopher R; Hiltke, Tara; Boja, Emily S; Mesri, Mehdi; Robles, Ana I; Rodriguez, Henry; Westbrook, Thomas F; Ding, Li; Getz, Gad; Clauser, Karl R; Fenyö, David; Ruggles, Kelly V; Zhang, Bing; Mani, D R; Carr, Steven A; Ellis, Matthew J; Gillette, Michael A
  3. Cell. 2020, NOV 25; 183(5): 1436-+.
  1. 15.   HIV-1 Gag protein with or without p6 specifically dimerizes on the viral RNA packaging signal
  2. Sarni, Samantha; Biswas,Banhi; Liu, Shuohui; Olson, Erik D.; Kitzrow, Jonathan P.; Rein,Alan; Wysocki, Vicki H.; Musier-Forsyth, Karin
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2020, OCT 16; 295(42): 14391-14401.
  1. 16.   Networks of HIV-1 Envelope Glycans Maintain Antibody Epitopes in the Face of Glycan Additions and Deletions
  2. Seabright, Gemma E; Cottrell, Christopher A; van Gils, Marit J; D'addabbo, Alessio; Harvey, David J; Behrens, Anna-Janina; Allen, Joel D; Watanabe, Yasunori; Scaringi, Nicole; Polveroni, Thomas M; Maker, Allison; Vasiljevic, Snezana; De Val Alda,Natalia; Sanders, Rogier W; Ward, Andrew B; Crispin, Max
  3. Structure (London, England : 1993). 2020, AUG 4; 28(8): 897-+.
  1. 17.   Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
  2. Gillette, Michael A; Satpathy, Shankha; Cao, Song; Dhanasekaran, Saravana M; Vasaikar, Suhas V; Krug, Karsten; Petralia, Francesca; Li, Yize; Liang, Wen-Wei; Reva, Boris; Krek, Azra; Ji, Jiayi; Song, Xiaoyu; Liu, Wenke; Hong, Runyu; Yao, Lijun; Blumenberg, Lili; Savage, Sara R; Wendl, Michael C; Wen, Bo; Li, Kai; Tang, Lauren C; MacMullan, Melanie A; Avanessian, Shayan C; Kane, M Harry; Newton, Chelsea J; Cornwell, MacIntosh; Kothadia, Ramani B; Ma, Weiping; Yoo, Seungyeul; Mannan, Rahul; Vats, Pankaj; Kumar-Sinha, Chandan; Kawaler, Emily A; Omelchenko, Tatiana; Colaprico, Antonio; Geffen, Yifat; Maruvka, Yosef E; da Veiga Leprevost, Felipe; Wiznerowicz, Maciej; Gümüs, Zeynep H; Veluswamy, Rajwanth R; Hostetter, Galen; Heiman, David I; Wyczalkowski, Matthew A; Hiltke, Tara; Mesri, Mehdi; Kinsinger, Christopher R; Boja, Emily S; Omenn, Gilbert S; Chinnaiyan, Arul M; Rodriguez, Henry; Li, Qing Kay; Jewell, Scott D; Thiagarajan,Mathangi; Getz, Gad; Zhang, Bing; Fenyö, David; Ruggles, Kelly V; Cieslik, Marcin P; Robles, Ana I; Clauser, Karl R; Govindan, Ramaswamy; Wang, Pei; Nesvizhskii, Alexey I; Ding, Li; Mani, D R; Carr, Steven A
  3. Cell. 2020, Jul 09; 182(1): 200-225.e35.
  1. 18.   Identification of Sec23ip, part of 14-3-3? protein network, as a regulator of acute steroidogenesis in MA-10 Leydig cells
  2. Aghazadeh, Yasaman; Venugopal, Sathvika; Martinez-Arguelles, Daniel Benjamin; Boisvert, Annie; Blonder,Josip; Papadopoulos, Vassilios
  3. Endocrinology. 2020, Feb 1; 161(2):
  1. 19.   Relationship of Serum Progesterone and Progesterone Metabolites with Mammographic Breast Density and Terminal Ductal Lobular Unit Involution among Women Undergoing Diagnostic Breast Biopsy
  2. Hada, Manila; Oh, Hannah; Fan, Shaoqi; Falk, Roni T; Geller, Berta; Vacek, Pamela; Weaver, Donald; Shepherd, John; Wang, Jeff; Fan, Bo; Herschorn, Sally; Brinton, Louise A; Xu,Xia; Sherman, Mark E; Trabert, Britton; Gierach, Gretchen L
  3. Journal of clinical medicine. 2020, Jan 17; 9(1):
  1. 20.   Physiologically relevant orthogonal assays for the discovery of small-molecule modulators of WIP1 phosphatase in high-throughput screens
  2. Clausse, Victor; Tao, Dingyin; Debnath, Subrata; Fang, Yuhong; Tagad, Harichandra D; Wang, Yuhong; Sun, Hongmao; LeClair, Christopher A; Mazur, Sharlyn J; Lane, Kelly; Shi, Zhen-Dan; Vasalatiy, Olga; Eells, Rebecca; Baker, Lynn K; Henderson, Mark J; Webb, Martin R; Shen, Min; Hall, Matthew D; Appella, Ettore; Appella, Daniel H; Coussens,Nathan
  3. The Journal of biological chemistry. 2019, Nov 15; 294(46): 17654-17668.
  1. 21.   Decreased antibiotic susceptibility driven by global remodeling of the Klebsiella pneumoniae proteome
  2. Keasey, Sarah L; Suh, Moo-Jin; Das, Sudipto; Blancett, Candace D; Zeng, Xiankun; Andresson, Thorkell; Sun, Mei G; Ulrich, Robert G
  3. Molecular & cellular proteomics : MCP. 2019, Apr; 18(4): 657-668.
  1. 22.   Do metabolites account for higher serum steroid hormone levels measured by RIA compared to mass spectrometry?
  2. Stanczyk, Frank Z; Xu, Xia; Sluss, Patrick M; Brinton, Louise A; McGlynn, Katherine A
  3. Clinica chimica acta; international journal of clinical chemistry. 2018, Sep; 484: 223-225.
  1. 23.   Site-Specific Glycosylation of Virion-Derived HIV-1 Env Is Mimicked by a Soluble Trimeric Immunogen
  2. Struwe, Weston B; Chertova, Elena; Allen, Joel D; Seabright, Gemma E; Watanabe, Yasunori; Harvey, David J; Medina-Ramirez, Max; Roser, James; Smith, Rodman; Westcott, David; Keele, Brandon; Bess, Julian; Sanders, Rogier W; Lifson, Jeffrey; Moore, John P; Crispin, Max
  3. Cell reports. 2018, Aug 21; 24(8): 1958-1966.e5.
  1. 24.   Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics
  2. Clark, David J.; Hu, Yingwei; Bocik, William; Chen, Lijun; Schnaubelt, Michael; Roberts, Rhonda; Shah, Punit; Whiteley, Gordon; Zhang, Hui
  3. JOURNAL OF PROTEOME RESEARCH. 2018, Jun; 17(6): 2205-2215.
  1. 25.   Partial Proteome of the Corynetoxin-Producing Gram-Positive Bacterium, Rathayibacter toxicus
  2. Fennessey, Christine; McMahon, Michael B; Sechler, Aaron; Kaiser, Jaclyn; Garrett, WesleyFixed The Affiliations M; Tancos, Matthew A; Luster, Douglas G; Rogers, Elizabeth E; Schneider, William L
  3. Proteomics. 2018, Feb; 18(3-4):
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