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  1. 1.   Estimation of mosaic loss of Y chromosome cell fraction with genotyping arrays lacking coverage in the pseudoautosomal region
  2. Zhou,Weiyin; Huang, Wen-Yi; Freedman, Neal D; Machiela, Mitchell
  3. BMC Bioinformatics. 2025, Feb 19; 26(1): 60.
  1. 2.   Association of changes in expression of HDAC and SIRT genes after drug treatment with cancer cell line sensitivity to kinase inhibitors
  2. Krushkal, Julia; Zhao, Yingdong; Roney, Kyle; Zhu, Weimin; Brooks,Alan; Wilsker,Deborah; Parchment, Ralph E; McShane, Lisa M; Doroshow, James H
  3. Epigenetics. 2024, Dec; 19(1): 2309824.
  1. 3.   Associations Between Mosaic Loss of Sex Chromosomes and Incident Hospitalization for Atrial Fibrillation in the United Kingdom
  2. Lim, Jungeun; Hubbard, Aubrey K; Blechter, Batel; Shi, Jianxin; Zhou,Weiyin; Loftfield, Erikka; Machiela, Mitchell J; Wong, Jason Y Y
  3. Journal of the American Heart Association. 2024, Nov 19; 13(22): e036984.
  1. 4.   A novel pathogenic germline chromosome 3 inversion in von Hippel-Lindau disease
  2. Vocke, Cathy D; Ricketts, Christopher J; Pack, Svetlana; Raffeld, Mark; Hewitt, Stephen; Lebensohn, Alexandra P; O'Brien, Lidenys; Gautam, Rabindra; Reynolds, Krista; Schmidt,Laura; Choo, Kristin; Kenigsberg, Alex; Gurram, Sandeep; Chew, Emily Y; Nilubol, Naris; Chittaboina, Prashant; Merino, Maria J; Ball, Mark W; Linehan, W Marston
  3. Journal of Medical Genetics. 2024, Sep 24;
  1. 5.   Telomere length and clonal chromosomal alterations in peripheral blood of patients with severe aplastic anaemia
  2. Strauss, Joshua D; Brown, Derek W; Zhou, Weiyin; Dagnall,Casey; Yuan, Jian-Min; Im, Annie; Savage, Sharon A; Wang, Youjin; Rafati, Maryam; Spellman, Stephen R; Gadalla, Shahinaz M
  3. British Journal of Haematology. 2024, Aug 05;
  1. 6.   Stability and gene strand bias of lambda prophages and chromosome organization in Escherichia coli
  2. Li, Xintian; Gallardo, Oscar; August, Elias; Dassa, Bareket; Court,Don; Stavans, Joel; Arbel-Goren, Rinat
  3. mBio. 2024, Jun 18; e0207823.
  1. 7.   DNAJC9 prevents CENP-A mislocalization and chromosomal instability by maintaining the fidelity of histone supply chains
  2. Balachandra, Vinutha; Shrestha, Roshan L; Hammond, Colin M; Lin, Shinjen; Hendriks, Ivo A; Sethi, Subhash Chandra; Chen, Lu; Sevilla, Samantha; Caplen, Natasha J; Chari,Raj; Karpova, Tatiana S; McKinnon, Katherine; Todd, Matthew Am; Koparde,Vishal; Cheng, Ken Chih-Chien; Nielsen, Michael L; Groth, Anja; Basrai, Munira A
  3. The EMBO Journal. 2024, Apr 10;
  1. 8.   Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencing
  2. Rodriguez, Isabel; Rossi, Nicole M; Keskus, Ayse G; Xie, Yi; Ahmad, Tanveer; Bryant, Asher; Lou,Hong; Paredes, Jesica Godinez; Milano, Rose; Rao, Nina; Tulsyan, Sonam; Boland, Joseph F; Luo,Wen; Liu,Jia; O'Hanlon, Tim; Bess, Jazmyn; Mukhina, Vera; Gaykalova, Daria; Yuki, Yuko; Malik, Laksh; Billingsley, Kimberley J; Blauwendraat, Cornelis; Carrington, Mary; Yeager,Meredith; Mirabello, Lisa; Kolmogorov, Mikhail; Dean, Michael
  3. American Journal of Human Genetics. 2024, Jan 25;
  1. 9.   Sequencing-based functional assays for classification of BRCA2 variants in mouse ESCs
  2. Biswas,Kajal; Mitrophanov,Alex; Sahu,Sounak; Sullivan,Teresa; Southon,Eileen; Nousome,Darryl; Reid, Susan; Narula, Sakshi; Smolen, Julia; Sengupta, Trisha; Riedel-Topper, Maximilian; Kapoor, Medha; Babbar, Anav; Stauffer,Stacey; Cleveland, Linda; Tandon, Mayank; Malys,Tyler; Sharan,Shyam
  3. Cell Reports Methods. 2023, Nov 20; 3(11): 100628.
  1. 10.   Histone H3/H4 chaperone CHAF1B prevents the mislocalization of CENP-A for chromosomal stability
  2. Shrestha, Roshan L; Balachandra, Vinutha; Kim, Jee Hun; Rossi, Austin; Vadlamani, Pranathi; Sethi, Subhash Chandra; Ozbun, Laurent; Lin, Shinjen; Cheng, Ken Chin-Chien; Chari,Raj; Karpova, Tatiana S; Pegoraro, Gianluca; Foltz, Daniel R; Caplen, Natasha J; Basrai, Munira A
  3. Journal of Cell Science. 2023, May 02; 136(10):
  1. 11.   Safety and immunogenicity of AGS-v PLUS, a mosquito saliva peptide vaccine against arboviral diseases: A randomized, double-blind, placebo-controlled Phase 1 trial
  2. Friedman-Klabanoff, DeAnna J; Birkhold, Megan; Short, Mara T; Wilson, Timothy R; Meneses, Claudio R; Lacsina, Joshua R; Oliveira, Fabiano; Kamhawi, Shaden; Valenzuela, Jesus G; Hunsberger, Sally; Mateja,Allyson; Stoloff, Gregory; Pleguezuelos, Olga; Memoli, Matthew J; Laurens, Matthew B
  3. EBioMedicine. 2022, Nov 24; 86: 104375.
  1. 12.   Polyfunctional antigen specific CD4± T cell responses in Patients with HIV/AIDS and Histoplasmosis Immune Reconstitution Inflammatory Syndrome
  2. Manion, Maura; Boulougoura, Afroditi; Naqvi, Nuha; Lage, Silvia Lucena; Richards, Elizabeth; Grivas, Christopher; Laidlaw, Elizabeth; Kuriakose, Safia; Ortega-Villa, Ana M; Tadros, Saber; Roby, Gregg; Rupert,Adam; Galindo, France; Anderson, Megan; Pau, Alice; Deepe, George; Sheikh, Virginia; Sereti, Irini
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2022, Jun 29;
  1. 13.   Mesothelioma Mouse Models with Mixed Genomic States of Chromosome and Microsatellite Instability
  2. Song,Yurong; Baxter,Shaneen; Dai,Lisheng; Sanders,Chelsea; Burkett,Sandra; Baugher,Ryan; Mellott,Stephanie; Young,Todd; Lawhorn,Heidi; Difilippantonio,Simone; Karim,Baktiar; Kadariya, Yuwaraj; Pinto,Ligia; Testa, Joseph R; Shoemaker, Robert H
  3. Cancers. 2022, Jun 24; 14(13):
  1. 14.   Aminoflavone upregulates putative tumor suppressor miR-125b-2-3p to inhibit luminal A breast cancer stem cell-like properties
  2. Mavingire, Nicole; Campbell,Petreena; Liu, Tiantian; Wooten, Jonathan; Khan, Salma; Chen, Xin; Matthews, Jason; Wang, Charles; Brantley, Eileen
  3. Precision Clinical Medicine. 2022, Jun; 5(2): pbac008.
  1. 15.   A germline 1;3 translocation disrupting the VHL gene: a novel genetic cause for von Hippel-Lindau
  2. Ricketts, Christopher J; Vocke, Cathy D; Lang, Martin; Chen,Jack; Zhao,Yongmei; Tran,Bao; Tandon, Mayank; Schmidt, Laura S; Ball, Mark W; Linehan, W Marston
  3. Journal of Medical Genetics. 2022, Jan; 59(1): 18-22.
  1. 16.   Development of inapparent dengue associated with increased antibody levels to Aedes aegypti salivary proteins: a longitudinal dengue cohort in Cambodia
  2. Manning, Jessica E; Chea, Sophana; Parker, Daniel M; Bohl, Jennifer A; Lay, Sreyngim; Mateja,Allyson; Man, Somnang; Nhek, Sreynik; Ponce, Aiyana; Sreng, Sokunthea; Kong, Dara; Kimsan, Soun; Meneses, Claudio; Fay, Michael P; Suon, Seila; Huy, Rekol; Lon, Chanthap; Leang, Rithea; Oliveira, Fabiano
  3. The Journal of Infectious Diseases. 2021, Oct 27;
  1. 17.   Mini-Factor H Modulates Complement-Dependent IL-6 and IL-10 Release in an Immune Cell Culture (PBMC) Model: Potential Benefits Against Cytokine Storm
  2. Kozma, Gergely Tibor; Mészáros, Tamás; Bakos, Tamás; Hennies, Mark; Bencze, Dániel; Uzonyi, Barbara; Gyorffy, Balázs; Cedrone,Edward; Dobrovolskaia,Marina; Józsi, Mihály; Szebeni, János
  3. Frontiers in Immunology. 2021, Apr 28; 12: 642860.
  1. 18.   Low-level variant calling for non-matched samples using a position-based and nucleotide-specific approach
  2. Dudley, Jeffrey N.; Hong, Celine S.; Hawari, Marwan A.; Shwetar, Jasmine; Sapp, Julie C.; Lack, Justin; Shiferaw, Henoke; Johnston, Jennifer J.; Biesecker, Leslie G.
  3. BMC Bioinformatics. 2021, Apr 8; 22(1):
  1. 19.   Pre-HCT mosaicism increases relapse risk and lowers survival in acute lymphoblastic leukemia patients post-unrelated HCT
  2. Wang, Yiwen; Zhou,Weiyin; Wang, Junke; Karaesmen, Ezgi; Tang, Hancong; McCarthy, Philip L.; Pasquini, Marcelo C.; Wang, Youjin; McReynolds, Lisa J.; Katki, Hormuzd A.; Machiela, Mitchell J.; Yeager,Meredith; Pooler, Loreall; Sheng, Xin; Haiman, Christopher A.; Van den Berg, David; Spellman, Stephen R.; Wang, Tao; Kuxhausen, Michelle; Chanock, Stephen J.; Lee, Stephanie J.; Clay-Gilmour, Alyssa; Hahn, Theresa E.; Gadalla, Shahinaz M.; Sucheston-Campbell, Lara E.
  3. Blood Advances. 2021, Jan 12; 5(1): 66-70.
  1. 20.   Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics
  2. Beklemisheva, Violetta R; Perelman, Polina L; Lemskaya, Natalya A; Proskuryakova, Anastasia A; Serdyukova, Natalya A; Burkanov, Vladimir N; Gorshunov, Maksim B; Ryder, Oliver; Thompson,Mary; Lento, Gina; O'Brien, Stephen J; Graphodatsky, Alexander S
  3. Genes. 2020, Dec 10; 11(12): pii: E1485.
  1. 21.   A small protein encoded by a putative lncRNA regulates apoptosis and tumorigenicity in human colorectal cancer cells
  2. Li, Xiao Ling; Pongor, Lorinc; Tang, Wei; Das,Sudipto; Muys, Bruna R; Jones, Matthew F; Lazar, Sarah B; Dangelmaier, Emily A; Hartford, Corrine Cr; Grammatikakis, Ioannis; Hao, Qinyu; Sun, Qinyu; Schetter, Aaron; Martindale, Jennifer L; Tang, BinWu; Jenkins, Lisa M; Robles, Ana I; Walker, Robert L; Ambs, Stefan; Chari,Raj; Shabalina, Svetlana A; Gorospe, Myriam; Hussain, Perwez S; Harris, Curtis C; Meltzer, Paul S; Prasanth, Kannanganattu V; Aladjem, Mirit I; Andresson,Thorkell; Lal, Ashish
  3. eLife. 2020, Oct 28; 9: pii: e53734..
  1. 22.   Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability
  2. Sebastian, Robin; Hosogane, Eri K; Sun, Eric G; Tran, Andy D; Reinhold, William C; Burkett,Sandra; Sturgill, David M; Gudla, Prabhakar R; Pommier, Yves; Aladjem, Mirit I; Oberdoerffer, Philipp
  3. Molecular cell. 2020, SEP 3; 79(5): 836-+.
  1. 23.   Development of a Genome-Wide Oligonucleotide Microarray Platform for Detection of DNA Copy Number Aberrations in Feline Cancers
  2. Thomas, Rachael; Pontius, Joan U; Borst, Luke B; Breen, Matthew
  3. Veterinary sciences. 2020, SEP; 7(3): E88.
  1. 24.   Structure elucidation and absolute configuration of metabolites from the soil-derived fungus Dictyosporium digitatum using spectroscopic and computational methods
  2. Tran, Trong D; Wilson,Brice; Henrich,Curtis; Wendt, Karen L; King, Jarrod; Cichewicz, Robert H; Stchigel, Alberto M; Miller, Andrew N; O'Keefe,Barry; Gustafson,Kirk
  3. Phytochemistry. 2020, May; 173: 112278.
  1. 25.   Mosaicism for KCNJ5 causing early-onset primary aldosteronism due to bilateral adrenocortical hyperplasia
  2. Maria, Andrea G; Suzuki, Mari; Berthon, Annabel; Kamilaris, Crystal; Demidowich, Andrew; Lack,Justin; Zilbermint, Mihail; Hannah-Shmouni, Fady; Faucz, Fabio R; Stratakis, Constantine A
  3. American journal of hypertension. 2020, Feb 22; 33(2): 124-130.
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