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  1. 1.   MYC assembles and stimulates topoisomerases 1 and 2 in a "topoisome"
  2. Das, Subhendu K.; Kuzin, Vladislav; Cameron, Donald P.; Sanford, Suzanne; Jha, Rajiv Kumar; Nie, Zuqin; Rosello, Marta Trullols; Holewinski,Ronald; Andresson,Thorkell; Wisniewski, Jan; Natsume, Toyoaki; Price, David H.; Lewis, Brian A.; Kouzine, Fedor; Levens, David; Baranello, Laura
  3. Molecular Cell. 2022, Jan 6; 82(1): 140-158. e12.
  1. 2.   Iterative epigenomic analyses in the same single cell
  2. Ohnuki, Hidetaka; Venzon, David J.; Lobanov,Alexei; Tosato, Giovanna
  3. Genome Research. 2021, Oct; 31(11): 1819-1830.
  1. 3.   Negative regulation of human U6 snRNA promoter by p38 kinase through Oct-1
  2. Lin, B. R.; Natarajan, V.
  3. Gene. 2012, Apr; 497(2): 200-207.
  1. 4.   Treatment of breast cancer cells with DNA demethylating agents leads to a release of Pol II stalling at genes with DNA-hypermethylated regions upstream of TSS
  2. Tao, Y. G.; Liu, S.; Briones, V.; Geiman, T. M.; Muegge, K.
  3. Nucleic Acids Research. 2011, Dec; 39(22): 9508-9520.
  1. 5.   Antitumor Activity of a Novel Oncrasin Analogue Is Mediated by JNK Activation and STAT3 Inhibition
  2. Guo, W.; Wu, S. H.; Wang, L.; Wei, X. L.; Liu, X. Y.; Wang, J.; Lu, Z. M.; Hollingshead, M.; Fang, B. L.
  3. Plos One. 2011, Dec; 6(12):
  1. 6.   Gene-specific transcription activation via long-range allosteric shape-shifting
  2. Tsai, C. J.; Nussinov, R.
  3. Biochemical Journal. 2011, Oct; 439: 15-25.
  1. 7.   RNA Folding in Transcription Elongation Complex IMPLICATION FOR TRANSCRIPTION TERMINATION
  2. Lubkowska, L.; Maharjan, A. S.; Komissarova, N.
  3. Journal of Biological Chemistry. 2011, Sep; 286(36): 31576-31585.
  1. 8.   Nature, Position, and Frequency of Mutations Made in a Single Cycle of HIV-1 Replication
  2. Abram, M. E.; Ferris, A. L.; Shao, W.; Alvord, W. G.; Hughes, S. H.
  3. Journal of Virology. 2010, Oct; 84(19): 9864-9878.
  1. 9.   Epigenetic Analysis of KSHV Latent and Lytic Genomes
  2. Toth, Z.; Maglinte, D. T.; Lee, S. H.; Lee, H. R.; Wong, L. Y.; Brulois, K. F.; Lee, S.; Buckley, J. D.; Laird, P. W.; Marquez, V. E.; Jung, J. U.
  3. Plos Pathogens. 2010, Jul; 6(7): 17.
  1. 10.   Exon Array Analyses across the NCI-60 Reveal Potential Regulation of TOP1 by Transcription Pausing at Guanosine Quartets in the First Intron
  2. Reinhold, W. C.; Mergny, J. L.; Liu, H. F.; Ryan, M.; Pfister, T. D.; Kinders, R.; Parchment, R.; Doroshow, J.; Weinstein, J. N.; Pommier, Y.
  3. Cancer Research. 2010, Mar; 70(6): 2191-2203.
  1. 11.   Transposition into Replicating DNA Occurs through Interaction with the Processivity Factor
  2. Parks, A. R.; Li, Z. P.; Shi, Q. J.; Owens, R. M.; Jin, M. M.; Peters, J. E.
  3. Cell. 2009 138(4): 685-695.
  1. 12.   Mammalian cell-cycle regulation: several Cdks, numerous cyclins and diverse compensatory mechanisms
  2. Satyanarayana, A.; Kaldis, P.
  3. Oncogene. 2009 28(33): 2925-2939.
  1. 13.   Global transcription in pluripotent embryonic stem cells
  2. Efroni, S.; Duttagupta, R.; Cheng, J.; Dehghani, H.; Hoeppner, D. J.; Dash, C.; Bazett-Jones, D. P.; Le Grice, S.; Mckay, R.; Buetow, K. H.; Gingeras, T. R.; Misteli, T.; Meshorer, E.
  3. Cell Stem Cell. 2008 2(5): 437-447.
  1. 14.   UVC inhibits HIF-1 alpha protein translation by a DNA damage- and topoisomerase I-independent pathway
  2. Rapisarda, A.; Melillo, G.
  3. Oncogene. 2007, Oct; 26(48): 6875-6884.
  1. 15.   Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner
  2. Galburt, E. A.; Grill, S. W.; Wiedmann, A.; Lubkowska, L.; Choy, J.; Nogales, E.; Kashlev, M.; Bustamante, C.
  3. Nature. 2007, Apr; 446(7137): 820-823.
  1. 16.   Nature of the nucleosomal barrier to RNA polymerase II
  2. Kireeva, M. L.; Hancock, B.; Cremona, G. H.; Walter, W.; Studitsky, V. M.; Kashlev, M.
  3. Molecular Cell. 2005, APR 1; 18(1): 97-108.
  1. 17.   Ty1 copy number dynamics in Saccharomyces
  2. Garfinkel, D. J.; Nyswaner, K. M.; Stefanisko, K. M.; Chang, C.; Moore, S. P.
  3. Genetics. 2005, APR; 169(4): 1845-1857.
  1. 18.   Integration target site selection for retroviruses and transposable elements
  2. Wu, X.; Burgess, S. M.
  3. Cellular and Molecular Life Sciences. 2004, OCT; 61(19-20): 2588-2596.
  1. 19.   Role of protein-protein interactions in the antiapoptotic function of EWS-Fli-1
  2. Ramakrishnan, R.; Fujimura, Y.; Zou, J. P.; Liu, F.; Lee, L.; Rao, V. N.; Reddy, E. S. P.
  3. Oncogene. 2004, SEP 16; 23(42): 7087-7094.
  1. 20.   Genetic interactions of DST1 in Saccharomyces cerevisiae suggest a role of TFIIS in the initiation-elongation transition
  2. Malagon, F.; Tong, A. H.; Shafer, B. K.; Strathern, J. N.
  3. Genetics. 2004 166(3): 1215-1227.
  1. 21.   Chromatin remodeling by RNA polymerases
  2. Studitsky, V. M.; Walter, W.; Kireeva, M.; Kashlev, M.; Felsenfeld, G.
  3. Trends in Biochemical Sciences. 2004 29(3): 127-135.
  1. 22.   Crystal structure of the AAA(+) alpha domain of E-coli Lon protease at 1.9 angstrom resolution
  2. Botos, I.; Melnikov, E. E.; Cherry, S.; Khalatova, A. G.; Rasulova, F. S.; Tropea, J. E.; Maurizi, M. R.; Rotanova, T. V.; Gustchina, A.; Wlodawer, A.
  3. Journal of Structural Biology. 2004, APR-MAY; 146(1-2): 113-122.
  1. 23.   Menin associates with a trithorax family histone methyltransferase complex and with the Hoxc8 locus
  2. Hughes, C. M.; Rozenblatt-Rosen, O.; Milne, T. A.; Copeland, T. D.; Levine, S. S.; Lee, J. C.; Hayes, D. N.; Shanmugam, K. S.; Bhattacharjee, A.; Biondi, C. A.; Kay, G. F.; Hayward, N. K.; Hess, J. L.; Meyerson, M.
  3. Molecular Cell. 2004 13(4): 587-597.
  1. 24.   Topoisomerase I-mediated inhibition of hypoxia-inducible factor 1: Mechanism and therapeutic implications
  2. Rapisarda, A.; Uranchimeg, B.; Sordet, O.; Pommier, Y.; Shoemaker, R. H.; Melillo, G.
  3. Cancer Research. 2004 64(4): 1475-1482.
  1. 25.   Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae
  2. Kireeva, M. L.; Lubkowska, L.; Komissarova, N.; Kashlev, M.
  3. RNA POLYMERASES AND ASSOCIATED FACTORS, PT C. 2003; 370 : 138-155.
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