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  1. 1.   Structural host- microbiota interaction networks
  2. Guven-Maiorov, Emine; Tsai, Chung-Jung; Nussinov, Ruth
  3. PLOS COMPUTATIONAL BIOLOGY. 2017, OCT; 13(10):
  1. 2.   Allostery and population shift in drug discovery
  2. Kar, G.; Keskin, O.; Gursoy, A.; Nussinov, R.
  3. Current Opinion in Pharmacology. 2010, Dec; 10(6): 715-722.
  1. 3.   Association of putative concave protein-binding sites with the fluctuation behavior of residues
  2. Ertekin, A.; Nussinov, R.; Haliloglu, T.
  3. Protein Science. 2006, Oct; 15(10): 2265-2277.
  1. 4.   Comparison of the protein-protein interfaces in the p53-DNA crystal structures: Towards elucidation of the biological interface
  2. Ma, B. Y.; Pan, Y. P.; Gunasekaran, K.; Venkataraghavan, R. B.; Levine, A. J.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, MAR 15; 102(11): 3988-3993.
  1. 5.   Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces
  2. Li, Y. L.; Huang, Y. P.; Swaminathan, C. P.; Smith-Gill, S. J.; Mariuzza, R. A.
  3. Structure. 2005, FEB; 13(2): 297-307.
  1. 6.   MAPPIS: Multiple 3D alignment of protein-protein interfaces
  2. Shulman-Peleg, A.; Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Computational Life Sciences. 2005; 3695 : 91-103.
  1. 7.   Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways
  2. Keskin, O.; Nussinov, R.
  3. Protein Engineering Design & Selection. 2005, JAN; 18(1): 11-24.
  1. 8.   A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications
  2. Keskin, O.; Tsai, C. J.; Wolfson, H.; Nussinov, R.
  3. Protein Science. 2004 13(4): 1043-1055.
  1. 9.   A method for simultaneous alignment of multiple protein structures
  2. Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2004 56(1): 143-156.
  1. 10.   Protein-protein interfaces: Recognition of similar spatial and chemical organizations
  2. Shulman-Peleg, A.; Mintz, S.; Nussinov, R.; Wolfson, H. J.
  3. Algorithms in Bioinformatics, Proceedings. 2004 3240: 194-205.
  1. 11.   Protein-protein interactions: Structurally conserved residues at protein-protein interfaces
  2. Keskin, O.; Haliloglu, T.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2004 86(1, Part 2 Suppl. S): 267A-267A.
  1. 12.   Modeling the binding sites of anti-hen egg white lysozyme antibodies HyHEL-8 and HyHEL-26: An insight into the molecular basis of antibody cross-reactivity and specificity
  2. Mohan, S.; Sinha, N.; Smith-Gill, J.
  3. Biophysical Journal. 2003 85(5): 3221-3236.
  1. 13.   Protein-protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces
  2. Ma, B. Y.; Elkayam, T.; Wolfson, H.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2003 100(10): 5772-5777.
  1. 14.   Taking geometry to its edge: Fast unbound rigid (and hinge- bent) docking
  2. Schneidman-Duhovny, D.; Inbar, Y.; Polak, V.; Shatsky, M.; Halperin, I.; Benyamini, H.; Barzilai, A.; Dror, O.; Haspel, N.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Genetics. 2003 52(1): 107-112.
  1. 15.   Efficient unbound docking of rigid molecules
  2. Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Algorithms in Bioinformatics, Proceedings. 2002; 2452 : 185-200.
  1. 16.   Transient, highly populated, building blocks folding model
  2. Tsai, C. J.; Nussinov, R.
  3. Cell Biochemistry and Biophysics. 2001 34(2): 209-235.
  1. 17.   Interdomain interactions in hinge-bending transitions
  2. Sinha, N.; Kumar, S.; Nussinov, R.
  3. Structure. 2001 9(12): 1165-1181.
  1. 18.   Conservation of polar residues as hot spots at protein interfaces
  2. Hu, Z. J.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Proteins: Structure, Function, & Genetics. 2000 39(4): 331-342.
  1. 19.   Electrostatic strengths of salt bridges in thermophilic and mesophilic glutamate dehydrogenase monomers
  2. Kumar, S.; Ma, B. Y.; Tsai, C. J.; Nussinov, R.
  3. Proteins. 2000 38(4): 368-383.
  1. 20.   Small molecule recognition: Solid angles surface representation and molecular shape complementarity
  2. Norel, R.; Wolfson, H. J.; Nussinov, R.
  3. Combinatorial Chemistry & High Throughput Screening. 1999 2(4): 223-236.
  1. 21.   Efficient computational algorithms for docking and for generating and matching a library of functional epitopes - I. Rigid and flexible hinge-bending docking algorithms
  2. Nussinov, R.; Wolfson, H. J.
  3. Combinatorial Chemistry & High Throughput Screening. 1999 2(5): 249-259.
  1. 22.   Structural Motifs At Protein-Protein Interfaces - Protein Cores Versus Two-State and Three-State Model Complexes
  2. Tsai, C. J.; Xu, D.; Nussinov, R.
  3. Protein Science. 1997 6(9): 1793-1805.
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