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  1. 1.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 2.   Kaposi Sarcoma-Associated Herpesvirus Risk and Disease in Kidney Donors and Transplant Recipients with HIV in the United States
  2. Nambiar, Puja; Liang, Tao; Labo,Maria Nazzarena; Hand, Jonathan; Blumberg, Emily A; Rana, Meenakshi M; Florman, Sander; Haydel, Brandy; Morris, Michele I; Schaenman, Joanna; Rodrigues, Moreno M S; Werbel, William A; Bowring, Mary G; Friedman-Moraco, Rachel J; Stock, Peter; Stosor, Valentina; Mehta, Shikha; Gilbert, Alexander J; Elias, Nahel; Mehta, Sapna A; Small, Catherine B; Haidar, Ghady; Malinis, Maricar; Pereira, Marcus R; Aslam, Saima; Wojciechowski, David; La Hoz, Ricardo; Santos, Carlos A Q; Apewokin, Senu; Castillo-Lugo, Jose A; Ranganna, Karthik; Morsheimer, Megan; Massie, Allan; Segev, Dorry L; Miley,Wendell; Marshall,Vickie; Whitby,Denise; Tobian, Aaron A A; Durand, Christine M
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2025, May 05;
  1. 3.   Developmental onset of planarian whole-body regeneration depends on axis reset
  2. Booth, Clare L T; Stevens, Brian C; Stubbert, Clover A; Kallgren,Neil; Deihl,Ennis; Davies,Erin
  3. Current Biology : CB. 2025, Apr 11;
  1. 4.   Elements in the 5' Untranslated Region of Viral RNA Important for HIV Gag Recognition and Cross-Packaging
  2. Cheng,Zetao; Nikolaitchik,Olga; Duchon,Alice; Rawson, Jonathan M O; Pathak,Vinay; Hu,Wei-Shau
  3. Viruses. 2025, Apr 10; 17(4): 551.
  1. 5.   Kaposi's sarcoma herpesvirus seroprevalence among blood donors in Uganda
  2. Huso, Tait; White, Jodie L; Kyeyune, Dorothy; D'Adamo, Angela; Labo,Maria Nazzarena; Miley,Wendell; Musisi, Ezra; Moses, Khan; Kasirye, Ronnie; Lubega, Irene; Wambongo Musana, Hellen; Eroju, Priscilla; Motevalli, Mahnaz; Goodrich, Raymond; Grabowski, M Kate; Quinn, Thomas C; Ness, Paul M; Hume, Heather A; Ddungu, Henry; Dhabangi, Aggrey; Bloch, Evan M; Fowler, Mary Glenn; Musoke, Philippa; Whitby, Denise; Tobian, Aaron A R
  3. Transfusion. 2025, Apr 02;
  1. 6.   Distinct allosteric networks in CDK4 and CDK6 in the cell cycle and in drug resistance
  2. Zhang,Wengang; Bradburn, Devin; Heidebrink, Gretchen; Liu, Yonglan; Jang,Hyunbum; Nussinov,Ruth; Kõivomägi, Mardo
  3. Journal of Molecular Biology. 2025, Mar 31; 169121.
  1. 7.   Harnessing molecular recognition for small molecule-mediated, reversible photochemical control over mRNA translation
  2. Parmar,Shaifaly; Tenney, Logan; Liang, Xiao; Routzahn,John; Sibley, Christopher D; Schneekloth,John
  3. Angewandte Chemie (International ed. in English). 2025, Mar 31; e202503078.
  1. 8.   Inhibition of Ribosome Biogenesis in vivo Causes p53-Dependent Death and p53-Independent Dysfunction
  2. Cho, Charles J; Nguyen, Thanh; Rougeau, Amala K; Huang, Yang-Zhe; To, Sarah; Lin, Xiaobo; Thalalla Gamage,Supuni; Meier,Jordan; Mills, Jason C
  3. Cellular and Molecular Gastroenterology and Hepatology. 2025, Mar 11; 101496.
  1. 9.   Donor telomeres and their magnitude of shortening post-allogeneic haematopoietic cell transplant impact survival for patients with early-stage leukaemia or myelodysplastic syndrome
  2. Gadalla, Shahinaz M; Katki, Hormuzd A; Lai, Tsung-Po; Auer, Paul L; Dagnall,Casey; Bupp, Caitrin; Hutchinson, Amy A; Anderson, James J; Mendez, Kyra J W; Spellman, Stephen R; Stewart, Valerie; Savage, Sharon A; Lee, Stephanie J; Levine, John E; Saber, Wael; Aviv, Abraham
  3. EBioMedicine. 2025, Mar 08; 114: 105641.
  1. 10.   Identification of molecular determinants of gene-specific bursting patterns by high-throughput imaging screens
  2. Sood, Varun; Holewinski,Ronald; Andresson,Thorkell; Larson, Daniel R; Misteli, Tom
  3. Molecular Cell. 2025, Feb 11;
  1. 11.   Modulation of the Substrate Preference of a MYST Acetyltransferase by a Scaffold Protein
  2. Sengupta, Raghuvir N; Brodsky, Oleg; Bingham, Patrick; Diehl, Wade C; Ferre, RoseAnn; Greasley, Samantha E; Johnson, Eric; Kraus, Michelle; Lieberman, Whitney; Meier,Jordan; Paul, Thomas A; Maegley, Karen A
  3. The Journal of Biological Chemistry. 2025, Feb 03; 108262.
  1. 12.   TRa1 mutant suppresses KLF9 to cause endometrial metaplasia with ectopic IL-33 expression leading to uterine fibrosis and infertility
  2. Edmondson,Elijah; Kimura, Takahito; Hwang, Eunmi; Kim, Minjun; Warner,Andrew; Zhu, Yuelin; Zhao, Li; Yu, Yanlin; Zhu, Xuguang; Hernandez, Maria; Kedei, Noemi; Cheng, Sheue-Yann
  3. Scientific Reports. 2025, Jan 31; 15(1): 3892.
  1. 13.   HIV-1 transcription start sites usage and its impact on unspliced RNA functions in people living with HIV
  2. Islam,Mohammad Saiful; Maldarelli,Frank; Nikolaitchik,Olga; Cheng,Zetao; Gorelick,Robert; Nikolaitchik, Maria A; Pathak,Vinay; Hu,Wei-Shau
  3. mBio. 2024, Dec 27; e0357624.
  1. 14.   Inferring phase transitions and critical exponents from limited observations with thermodynamic maps
  2. Herron, Lukas; Mondal, Kinjal; Schneekloth,Jay; Tiwary, Pratyush
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Dec 24; 121(52): e2321971121.
  1. 15.   The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A
  2. Kochen Rossi, Juan; Nuevo-Tapioles, Cristina; O'Keefe, Rachel A; Hunkeler, Moritz; Schmoker, Anna M; Fissore-O'Leary, Mercedes; Su, Wenjuan; Ahearn, Ian M; Branco, Cristina; Cheong, Hakyung; Esposito,Dom; Clotea, Ioana; Ueberheide, Beatrix; Fischer, Eric S; Philips, Mark R
  3. Cell Reports. 2024, Dec 19; 44(1): 115087.
  1. 16.   A KSHV RNA-binding protein promotes FOS to inhibit nuclease AEN and transactivate RGS2 for AKT phosphorylation
  2. Majerciak,Vladimir; Alvarado-Hernandez, Beatriz; Ma, Yanping; Duduskar, Shivalee; Lobanov, Alexei; Cam, Maggie; Zheng,Zhi-Ming
  3. mBio. 2024, Dec 10; e0317224.
  1. 17.   Interleukin-2-mediated NF-kB-dependent mRNA splicing modulates interferon gamma protein production
  2. Van Gelder, Rachel D; Gokhale, Nandan S; Genoyer, Emmanuelle; Omelia, Dylan S; Anderson,Steve; Young,Howard; Savan, Ram
  3. EMBO Reports. 2024, Nov 22;
  1. 18.   Genomic insights for personalised care in lung cancer and smoking cessation: motivating at-risk individuals toward evidence-based health practices
  2. Chen, Tony; Pham, Giang; Fox, Louis; Adler, Nina; Wang,Kevin; Zhang, Jingning; Byun, Jinyoung; Han, Younghun; Saunders, Gretchen R B; Liu, Dajiang; Bray, Michael J; Ramsey, Alex T; McKay, James; Bierut, Laura J; Amos, Christopher I; Hung, Rayjean J; Lin, Xihong; Zhang, Haoyu; Chen, Li-Shiun
  3. EBioMedicine. 2024, Nov 08; 110: 105441.
  1. 19.   High-dimensional analysis of NK cells in kidney transplantation uncovers subsets associated with antibody-independent graft dysfunction
  2. Ruan, Dan Fu; Fribourg, Miguel; Yuki,Yuko; Park,Yeon-Hwa; Martin,Pat; Yu, Haocheng; Kelly, Geoffrey C; Lee, Brian H; de Real, Ronaldo M; Lee, Rachel; Geanon, Daniel; Kim-Schulze, Seunghee; Chun, Nicholas; Cravedi, Paolo; Carrington,Mary; Heeger, Peter S; Horowitz, Amir
  3. JCI insight. 2024, Nov 8; 9(21):
  1. 20.   Single-cell transcriptional analysis of murine norovirus infection in a human intestinal cell line
  2. Matsushima, Yuki; Levenson, Eric A; Chaimongkol, Natthawan; Harris, Loyall; Zhao,Yongmei; Turan,Sevilay; Otaizo-Carrasquero, Francisco; Ganesan, Sundar; Hornick, Katherine M; Martens, Craig; Sosnovtsev, Stanislav V; Green, Kim Y
  3. Journal of Virology. 2024, Oct 30; e0161724.
  1. 21.   Human Cripto-1 and Cripto-3 Protein Expression in Normal and Malignant Settings That Conflicts with Established Conventions
  2. Cuttitta,Frank; García-Sanmartín, Josune; Feng,Yang; Sunday, Mary Elizabeth; Kim, Young S; Martínez, Alfredo
  3. Cancers. 2024, Oct 23; 16(21):
  1. 22.   Factors affecting Kaposi's sarcoma-associated herpesvirus transmission in rural Ugandan households, a longitudinal study
  2. Sabourin, Katherine R; Marshall, Vickie A; Eaton, Will; Kimono, Beatrice; Mugisha, Joseph; Miley, Wendell J; Labo, Nazzarena; Samayoa-Reyes, Gabriela; Whitby, Denise; Rochford, Rosemary; Newton, Robert
  3. Infectious Agents and Cancer. 2024, Oct 03; 19(1): 49.
  1. 23.   Bisubstrate inhibitors of 6-hydroxymethyl-7,8-dihydroptein pyrophosphokinase: Toward cell permeability
  2. Shi,Genbin; Shaw,Gary; Ji,Xinhua
  3. Bioorganic & Medicinal Chemistry Letters. 2024, Sep 25; 129977.
  1. 24.   Translation of HIV-1 unspliced RNA is regulated by 5' untranslated region structure
  2. Cheng,Zetao; Islam,Mohammad Saiful; Kanlong, Joseph G; Sheppard, Madeline; Seo, Heewon; Nikolaitchik,Olga; Kearse, Michael G; Pathak,Vinay; Musier-Forsyth, Karin; Hu,Wei-Shau
  3. Journal of Virology. 2024, Sep 24; e0116024.
  1. 25.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
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