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  1. 1.   HIVGenoPipe: a nextflow pipeline for the detection of HIV-1 drug resistance using a real-time sample-specific reference sequence
  2. Dotrang,Thoai; Sherman,Brad; Dai,Lisheng; Khan,Muhammad; Highbarger,Helene; Bruchey,Whitney; Laverdure,Sylvain; Baseler,Michael; Imamichi,Tomozumi; Dewar,Robin; Chang,Weizhong
  3. BMC Bioinformatics. 2025, Jul 07; 26(1): 168.
  1. 2.   Programmed death-1 inhibition increases vaccine-induced T-cell infiltration in patients with prostate cancer
  2. Lassoued, Wiem; Madan, Ravi A; Xue, Elisabetta; Burnett, Daniel; Canubas, Kenneth D; Bailey, Shania; Marté, Jennifer L; Tsai, Yo-Ting; Donahue, Renee N; Turkbey, Ismail Baris; Papanicolau-Sengo, Antonios; Williams, Moniquea; Hankin, Amy; Manukyan,Manuk; Manu, Michell; Kang, Zhigang; Pritchard, Colin; Dahut, William; Karzai, Fatima; Schlom, Jeffrey; Sater, Sam; Pinto, Peter; Gulley, James L
  3. Journal for Immunotherapy of Cancer. 2025, Jun 22; 13(6):
  1. 3.   The oral microbiome and all-cause mortality in aUS population representative prospective cohort
  2. Vogtmann, Emily; Yano, Yukiko; Shi, Jianxin; Wan,Yunhu; Purandare, Vaishnavi; McLean, Jody; Li, Shilan; Knight, Rob; Kahle, Lisa; Hullings, Autumn G; Hua,Xing; Graubard, Barry I; Gillison, Maura L; Caporaso, J Gregory; Bokulich, Nicholas A; Blaser, Martin J; Freedman, Neal D; Chaturvedi, Anil K; Abnet, Christian C
  3. The Journal of Infectious Diseases. 2025, Jun 13;
  1. 4.   Monotherapy with antibody 1C3 partially protects Ebola virus-exposed macaques
  2. Worwa, Gabriella; Davis, Carl W; Klim, Sarah E; Turcinovic, Jacquelyn; Agans, Krystle N; Borisevich, Viktoriya; Geisbert, Joan B; Cross, Robert W; Crane, Anya; Holbrook, Michael R; Sanchez-Lockhart, Mariano; Kugelman, Jeffrey R; Patino Galindo, Juan A; Geisbert, Thomas W; Ahmed, Rafi; Kuhn, Jens H; Ollmann Saphire, Erica; Palacios, Gustavo; Crozier,Ian
  3. Journal of Virology. 2025, Jun 10; e0029625.
  1. 5.   Kaposi Sarcoma-Associated Herpesvirus Risk and Disease in Kidney Donors and Transplant Recipients with HIV in the United States
  2. Nambiar, Puja; Liang, Tao; Labo,Maria Nazzarena; Hand, Jonathan; Blumberg, Emily A; Rana, Meenakshi M; Florman, Sander; Haydel, Brandy; Morris, Michele I; Schaenman, Joanna; Rodrigues, Moreno M S; Werbel, William A; Bowring, Mary G; Friedman-Moraco, Rachel J; Stock, Peter; Stosor, Valentina; Mehta, Shikha; Gilbert, Alexander J; Elias, Nahel; Mehta, Sapna A; Small, Catherine B; Haidar, Ghady; Malinis, Maricar; Pereira, Marcus R; Aslam, Saima; Wojciechowski, David; La Hoz, Ricardo; Santos, Carlos A Q; Apewokin, Senu; Castillo-Lugo, Jose A; Ranganna, Karthik; Morsheimer, Megan; Massie, Allan; Segev, Dorry L; Miley,Wendell; Marshall,Vickie; Whitby,Denise; Tobian, Aaron A A; Durand, Christine M
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2025, May 05;
  1. 6.   NMR 1H, 13C, and 15N resonance assignments of the oncogenic Q61R variant of human NRAS in the active, GTP-bound conformation
  2. Sharma,Alok; Tonelli, Marco; Dyba,Marcin; Esposito,Dominic; Esposito,Dominic; Nissley,Dwight; McCormick, Frank; Maciag,Anna
  3. Biomolecular NMR Assignments. 2025, May 02;
  1. 7.   Development of patient reported outcome measures assessing tumor pain intensity and tumor pain interference for individuals with neurofibromatosis type 1 and plexiform neurofibromas: qualitative findings
  2. Al Ghriwati, Nour; Struemph, Kari; Martin, Staci; Little, Paige; Baker, Melissa; Levine, Jason; MacKenzie, Cynthia; Tonsgard, James; Schorry, Elizabeth K; Walsh, Karin S; Wolters, Pamela L
  3. Journal of Patient-Reported Outcomes. 2025, Apr 30; 9(1): 46.
  1. 8.   CR1 variants contribute to FSGS susceptibility across multiple populations
  2. Skitchenko, Rostislav; Modrusan, Zora; Loboda, Alexander; Kopp, Jeffrey B; Winkler,Cheryl; Sergushichev, Alexey; Gupta, Namrata; Stevens, Christine; Daly, Mark J; Shaw, Andrey; Artomov, Mykyta
  3. iScience. 2025, Apr 18; 28(4): 112234.
  1. 9.   Olaparib in treatment-refractory isocitrate dehydrogenase 1 (IDH1)- and IDH2-mutant cholangiocarcinoma: Safety and antitumor activity from the phase 2 National Cancer Institute 10129 trial
  2. Cecchini, Michael; Pilat, Mary Jo; Uboha, Nataliya; Azad, Nilofer S; Cho, May; Davis, Elizabeth J; Ahnert, Jordi Rodon; Tinoco, Gabriel; Shapiro, Geoffrey I; Khagi, Simon; Powers, Benjamin; Spencer, Kristen; Groisberg, Roman; Drappatz, Jan; Chen, Li; Das,Bishu; Bao, Xun; Li, Jing; Narayan, Azeet; Vu, Dennis; Patel, Abhijit; Niger, Monica; Doroshow, Deborah; Durecki, Diane; Boerner, Scott A; Bindra, Ranjit; Ivy, Percy; Shyr, Derek; Shyr, Yu; LoRusso, Patricia M
  3. Cancer. 2025, Feb 15; 131(4): e35755.
  1. 10.   Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss-of-function and gain-of-function mutants
  2. Xu,Liang; Jang,Hyunbum; Nussinov,Ruth
  3. Protein Science : a publication of the Protein Society. 2025, Feb; 34(2): e70042.
  1. 11.   A Mixed Methods Study of Medication Adherence in Adults with Neurofibromatosis Type 1 (NF1) on a Clinical Trial of Selumetinib
  2. Curlee, Millicent S; Toledo-Tamula, Mary Anne; Baker, Melissa; Wikstrom, Daniel; Harrison, Cynthia; Rhodes, Amanda; Fagan, Margaret; Tibery,Cecilia; Wolters, Pamela L; Widemann, Brigitte C; Gross, Andrea M; Martin, Staci
  3. Cancers. 2025, Jan 17; 17(2):
  1. 12.   Comparative Analyses of Antiviral Potencies of Second-Generation Integrase Strand Transfer Inhibitors (INSTIs) and the Developmental Compound 4d Against a Panel of Integrase Quadruple Mutants
  2. Smith,Steven; Zhao,Xuezhi; Hughes,Stephen; Burke,Terrence
  3. Viruses. 2025, Jan 16; 17(1):
  1. 13.   Inferring phase transitions and critical exponents from limited observations with thermodynamic maps
  2. Herron, Lukas; Mondal, Kinjal; Schneekloth,Jay; Tiwary, Pratyush
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Dec 24; 121(52): e2321971121.
  1. 14.   Beyond traditional screening: Unveiling antibiotic potentials of actinomycetes in extreme environments
  2. Trenozhnikova, Lyudmila P; Baimakhanova, Gul B; Baimakhanova, Baiken B; Balgimbayeva, Assya S; Daugaliyeva, Saule T; Faizulina, Elmira R; Tatarkina, Larisa G; Spankulova, Gulzhan A; Berillo, Dmitriy A; Beutler,John
  3. Heliyon. 2024, Nov 30; 10(22): e40371.
  1. 15.   High-dimensional analysis of NK cells in kidney transplantation uncovers subsets associated with antibody-independent graft dysfunction
  2. Ruan, Dan Fu; Fribourg, Miguel; Yuki,Yuko; Park,Yeon-Hwa; Martin,Pat; Yu, Haocheng; Kelly, Geoffrey C; Lee, Brian H; de Real, Ronaldo M; Lee, Rachel; Geanon, Daniel; Kim-Schulze, Seunghee; Chun, Nicholas; Cravedi, Paolo; Carrington,Mary; Heeger, Peter S; Horowitz, Amir
  3. JCI insight. 2024, Nov 8; 9(21):
  1. 16.   Waterless structures in the Protein Data Bank
  2. Wlodawer,Alexander; Dauter, Zbigniew; Rubach, Pawel; Minor, Wladek; Loch, Joanna I; Brzezinski, Dariusz; Gilski, Miroslaw; Jaskolski, Mariusz
  3. IUCrJ. 2024, Nov 01;
  1. 17.   The structure of the IL-11 signalling complex provides insight into receptor variants associated with craniosynostosis
  2. Sentosa, Darlene D; Metcalfe,Riley; Sims, Natalie A; Putoczki, Tracy L; Griffin, Michael D W
  3. The FEBS Journal. 2024, Oct 27;
  1. 18.   Practical application of good participatory practices for trials of emerging pathogens: Developing materials for use in ACTIV-3, -3b, and ACTIV-associated COVID-19 trials
  2. Guerra-de-Blas, Paola Del Carmen; Marines-Price, Rubria; Milman, Olga; Deal,Danae; Marchand,Jon; Linton,Jessica; Meger, Sue; Rule, John; Holland, Thomas L; Kitonsa, Jonathan; Delph, Yvette
  3. Journal of Clinical and Translational Science. 2024, Oct 15; 8(1): e157.
  1. 19.   Bisubstrate inhibitors of 6-hydroxymethyl-7,8-dihydroptein pyrophosphokinase: Toward cell permeability
  2. Shi,Genbin; Shaw,Gary; Ji,Xinhua
  3. Bioorganic & Medicinal Chemistry Letters. 2024, Sep 25; 129977.
  1. 20.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
  1. 21.   Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature
  2. Chen, Julian C H; Gilski, Miroslaw; Chang, Changsoo; Borek, Dominika; Rosenbaum, Gerd; Lavens, Alex; Otwinowski, Zbyszek; Kubicki, Maciej; Dauter, Zbigniew; Jaskolski, Mariusz; Joachimiak, Andrzej
  3. IUCrJ. 2024, Sep 01; 11(Pt 5): 649-663.
  1. 22.   Hemophagocytic Lymphohistiocytosis Gene Variants in Severe Aplastic Anemia and Their Impact on Hematopoietic Cell Transplantation Outcomes
  2. Rafati, Maryam; McReynolds, Lisa J; Wang, Youjin; Hicks,Belynda; Jones,Kristine; Spellman, Stephen R; He, Meilun; Bolon, Yung-Tsi; Arrieta-Bolaños, Esteban; Saultz, Jennifer N; Lee, Stephanie J; Savage, Sharon A; Gadalla, Shahinaz M
  3. Transplantation and Cellular Therapy. 2024, Aug ; 30(8): 770e1-770e10.
  1. 23.   Long-term engraftment and maturation of autologous iPSC-derived cardiomyocytes in two rhesus macaques
  2. Lin, Yongshun; Sato, Noriko; Hong, Sogun; Nakamura, Kenta; Ferrante, Elisa A; Yu, Zu Xi; Chen, Marcus Y; Nakamura, Daisy S; Yang, Xiulan; Clevenger, Randall R; Hunt, Timothy J; Taylor, Joni L; Jeffries, Kenneth R; Keeran, Karen J; Neidig, Lauren E; Mehta, Atul; Schwartzbeck, Robin; Yu, Shiqin Judy; Kelly, Conor; Navarengom, Keron; Takeda, Kazuyo; Adler,Stephen; Choyke, Peter L; Zou, Jizhong; Murry, Charles E; Boehm, Manfred; Dunbar, Cynthia E
  3. Cell Stem Cell. 2024, Jul 7; 31(7): 974-988.
  1. 24.   Phase II study of vemurafenib in children and young adults with tumors harboring BRAF V600 mutations: NCI-COG pediatric MATCH trial (APEC1621) Arm G
  2. Nelson, Marie V; Kim, AeRang; Williams,Mickey; Roy-Chowdhuri, Sinchita; Patton, David R; Coffey, Brent D; Reid, Joel M; Piao, Jin; Saguilig, Lauren; Alonzo, Todd A; Berg, Stacey L; Ramirez, Nilsa C; Jaju, Alok; Fox, Elizabeth; Weigel, Brenda J; Hawkins, Douglas S; Mooney, Margaret M; Takebe, Naoko; Tricoli, James V; Janeway, Katherine A; Seibel, Nita L; Parsons, D Williams
  3. The Oncologist. 2024, Jun 14;
  1. 25.   Transcription factor Tox2 is required for metabolic adaptation and tissue residency of ILC3 in the gut
  2. Das, Arundhoti; Martinez-Ruiz, Gustavo Ulises; Bouladoux, Nicolas; Stacy, Apollo; Moraly, Josquin; Vega-Sendino, Maria; Zhao, Yongge; Lavaert, Marieke; Ding, Yi; Morales-Sanchez, Abigail; Harly, Christelle; Seedhom, Mina O; Chari,Raj; Awasthi, Parirokh; Ikeuchi, Tomoko; Wang, Yueqiang; Zhu, Jinfang; Moutsopoulos, Niki M; Chen, WanJun; Yewdell, Jonathan W; Shapiro, Virginia Smith; Ruiz, Sergio; Taylor, Naomi; Belkaid, Yasmine; Bhandoola, Avinash
  3. Immunity. 2024, May 14; 57(5): 1019-1036.
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