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  1. 1.   Use of mobile phones to collect data on COVID-19: phone access and participation rates, in Rakai, Uganda
  2. Ssekubugu, Robert; Ndyanabo, Anthony; Makumbi, Fredrick; Ekström, Anna Mia; Beres, Laura; Nalwoga Kigozi, Grace; Nakawooya, Hadijja; Ssekasanvu, Joseph; Wawer, Maria J; Nalugoda, Fred; Sewankambo, Nelson; Ssempijja,Victor; Nantume, Betty; Serwadda, David; Kigozi, Godfrey; Gray, Ronald H; Chang, Larry W; Grabowski, M Kate; Nordenstedt, Helena; Kagaayi, Joseph
  3. Global Health Action. 2024, Dec 31; 17(1): 2419160.
  1. 2.   Multi-objective latent space optimization of generative molecular design models
  2. Abeer, A N M Nafiz; Urban, Nathan M; Weil,Michael; Alexander, Francis J; Yoon, Byung-Jun
  3. Patterns (New York, N.Y.). 2024, Oct 11; 5(10): 101042.
  1. 3.   Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
  2. Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G; Zheng, Lily; Zhao,Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A; Xiao, Wenming; Meerzaman, Daoud M
  3. Genome Biology. 2024, Jun 20; 25(1): 163.
  1. 4.   Detecting genomic deletions from high-throughput sequence data with unsupervised learning
  2. Li,Xin; Wu, Yufeng
  3. BMC Bioinformatics. 2023, Jan 27; 23(Suppl 8): 568.
  1. 5.   Graph embedding and Gaussian mixture variational autoencoder network for end-to-end analysis of single-cell RNA sequencing data
  2. Xu, Junlin; Xu, Jielin; Meng, Yajie; Lu, Changcheng; Cai, Lijun; Zeng, Xiangxiang; Nussinov,Ruth; Cheng, Feixiong
  3. Cell Reports Methods. 2023, Jan 23; 3(1): 100382.
  1. 6.   Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
  2. Talsania,Keyur; Shen,Tsai-Wei; Chen, Xiongfong; Jaeger, Erich; Li, Zhipan; Chen, Zhong; Chen, Wanqiu; Tran,Bao; Kusko, Rebecca; Wang, Limin; Pang, Andy Wing Chun; Yang, Zhaowei; Choudhari, Sulbha; Colgan, Michael; Fang, Li Tai; Carroll, Andrew; Shetty,Jyoti; Kriga,Yuliya; German,Oksana; Smirnova,Tatyana; Liu, Tiantain; Li, Jing; Kellman, Ben; Hong, Karl; Hastie, Alex R; Natarajan, Aparna; Moshrefi, Ali; Granat, Anastasiya; Truong, Tiffany; Bombardi, Robin; Mankinen, Veronnica; Meerzaman, Daoud; Mason, Christopher E; Collins, Jack; Stahlberg, Eric; Xiao, Chunlin; Wang, Charles; Xiao, Wenming; Zhao,Yongmei
  3. Genome Biology. 2022, Dec 13; 23(1): 255.
  1. 7.   Distinct frequency patterns of LILRB3 and LILRA6 allelic variants in Europeans
  2. Bashirova,Arman; Kasprzak,Wojciech; Ohuigin,Colm; Carrington,Mary
  3. Immunogenetics. 2022, Nov 30;
  1. 8.   Human Dectin-1 deficiency impairs macrophage-mediated defense against phaeohyphomycosis
  2. Drummond, Rebecca A; Desai, Jigar V; Hsu, Amy P; Oikonomou, Vasileios; Vinh, Donald C; Acklin, Joshua A; Abers, Michael S; Walkiewicz, Magdalena A; Anzick, Sarah L; Swamydas, Muthulekha; Vautier, Simon; Natarajan, Mukil; Oler, Andrew J; Yamanaka, Daisuke; Mayer-Barber, Katrin D; Iwakura, Yoichiro; Bianchi, David; Driscoll, Brian; Hauck, Ken; Kline, Ahnika; Viall, Nicholas Sp; Zerbe, Christa S; Ferré, Elise Mn; Schmitt, Monica M; DiMaggio, Tom; Pittaluga, Stefania; Butman, John A; Zelazny, Adrian M; Shea, Yvonne R; Arias, Cesar A; Ashbaugh, Cameron; Mahmood, Maryam; Temesgen, Zelalem; Theofiles, Alexander G; Nigo, Masayuki; Moudgal, Varsha; Bloch, Karen C; Kelly, Sean G; Whitworth, M Suzanne; Rao, Ganesh; Whitener, Cindy J; Mafi, Neema; Gea-Banacloche, Juan; Kenyon, Lawrence C; Miller, William R; Boggian, Katia; Gilbert, Andrea; Sincock, Matthew; Freeman, Alexandra F; Bennett, John E; Hasbun, Rodrigo; Mikelis, Constantinos M; Kwon-Chung, Kyung J; Belkaid, Yasmine; Brown, Gordon D; Lim, Jean K; Kuhns,Doug; Holland, Steven M; Lionakis, Michail S
  3. The Journal of Clinical Investigation. 2022, Nov 15; 132(22):
  1. 9.   Give and Take: Effects of Genetic Admixture on Mutation Load in Endangered Florida Panthers
  2. Ochoa, Alexander; Onorato, David P; Roelke-Parker,Melody; Culver, Melanie; Fitak, Robert R
  3. The Journal of Heredity. 2022, Aug 05;
  1. 10.   Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2
  2. Gao, Nan; Gai, Yanxin; Meng, Lina; Wang, Chu; Wang, Wei; Li, Xiaojun; Gu, Tiejun; Louder, Mark K; Doria-Rose, Nicole A; Wiehe, Kevin; Nazzari, Alexandra F; Olia, Adam S; Gorman, Jason; Rawi, Reda; Wu, Wenmin; Smith, Clayton; Khant, Htet; de Val, Natalia; Yu, Bin; Luo, Junhong; Niu, Haitao; Tsybovsky, Yaroslav; Liao, Huaxin; Kepler, Thomas B; Kwong, Peter D; Mascola, John R; Qin, Chuan; Zhou, Tongqing; Yu, Xianghui; Gao, Feng
  3. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2022, Mar 23; e2200063.
  1. 11.   Phylogenomic Analysis of Human Papillomavirus Type 31 and Cervical Carcinogenesis: A Study of 2093 Viral Genomes
  2. Pinheiro, Maisa; Harari, Ariana; Schiffman, Mark; Clifford, Gary M; Chen, Zigui; Yeager, Meredith; Cullen,Michael; Boland, Joseph F; Raine-Bennett, Tina; Steinberg, Mia; Bass, Sara; Xiao, Yanzi; Tenet, Vanessa; Yu, Kai; Zhu, Bin; Burdett,Laurie; Turan, Sevilay; Lorey, Thomas; Castle, Philip E; Wentzensen, Nicolas; Burk, Robert D; Mirabello, Lisa
  3. Viruses. 2021, Sep 28; 13(10):
  1. 12.   SARS-CoV-2 Entry Related Viral and Host Genetic Variations: Implications on COVID-19 Severity, Immune Escape, and Infectivity
  2. Huang,Szu-Wei; Wang, Sheng-Fan
  3. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2021, Mar 17; 22(6):
  1. 13.   Impact of Genetic Variability in ACE2 Expression on the Evolutionary Dynamics of SARS-CoV-2 Spike D614G Mutation
  2. Huang, Szu-Wei; Miller, Sorin O.; Yen, Chia-Hung; Wang, Sheng-Fan
  3. Genes. 2020, Dec 24; 12(1):
  1. 14.   Molecular Genomic Features Associated with in Vitro Response of the NCI-60 Cancer Cell Line Panel to Natural Products
  2. Krushkal, Julia; Negi, Simarjeet; Yee, Laura M; Evans,Jason; Grkovic,Tanja; Palmisano, Alida; Fang, Jianwen; Sankaran, Hari; McShane, Lisa M; Zhao, Yingdong; O'Keefe,Barry
  3. Molecular oncology. 2020, NOV 24;
  1. 15.   Calibration of pathogenicity due to variant-induced leaky splicing defects by using BRCA2 exon 3 as a model system
  2. Tubeuf, Hélène; Caputo, Sandrine M; Sullivan,Teresa; Rondeaux, Julie; Krieger, Sophie; Caux-Moncoutier, Virginie; Hauchard, Julie; Castelain, Gaia; Fiévet, Alice; Meulemans, Laëtitia; Révillion, Françoise; Léone, Mélanie; Boutry-Kryza, Nadia; Delnatte, Capucine; Guillaud-Bataille, Marine; Cleveland, Linda; Reid,Susan; Southon,Eileen; Soukarieh, Omar; Drouet, Aurélie; Di Giacomo, Daniela; Vezain, Myriam; Bonnet-Dorion, Françoise; Bourdon, Violaine; Larbre, Hélène; Muller, Danièle; Pujol, Pascal; Vaz, Fátima; Audebert-Bellanger, Séverine; Colas, Chrystelle; Venat-Bouvet, Laurence; Solano, Angela R; Stoppa-Lyonnet, Dominique; Houdayer, Claude; Frebourg, Thierry; Gaildrat, Pascaline; Sharan, Shyam K; Martins, Alexandra
  3. Cancer research. 2020, SEP 1; 80(17): 3593-3605.
  1. 16.   Genetic Testing for APOL1 Genetic Variants in Clinical Practice: Finally Starting to Arrive
  2. Kopp, Jeffrey B; Winkler,Cheryl
  3. Clinical journal of the American Society of Nephrology : CJASN. 2020, JAN 7; 15(1): 126-128.
  1. 17.   Differential Activation of the Transcription Factor IRF1 Underlies the Distinct Immune Responses Elicited by Type I and Type III Interferons
  2. Forero, Adriana; Ozarkar, Snehal; Li,Hongchuan; Lee, Chia Heng; Hemann, Emily A; Nadjsombati, Marija S; Hendricks, Matthew R; So, Lomon; Green, Richard; Roy, Chandra N; Sarkar, Saumendra N; von Moltke, Jakob; Anderson,Steve; Gale, Michael; Savan, Ram
  3. Immunity. 2019, SEP 17; 51(3): 451-+.
  1. 18.   An admixture mapping meta-analysis implicates genetic variation at 18q21 with asthma susceptibility in Latinos
  2. Gignoux, Chris R; Torgerson, Dara G; Pino-Yanes, Maria; Uricchio, Lawrence H; Galanter, Joshua; Roth, Lindsey A; Eng, Celeste; Hu, Donglei; Nguyen, Elizabeth A; Huntsman, Scott; Mathias, Rasika A; Kumar, Rajesh; Rodriguez-Santana, Jose; Thakur, Neeta; Oh, Sam S; McGarry, Meghan; Moreno-Estrada, Andres; Sandoval, Karla; Winkler, Cheryl; Seibold, Max A; Padhukasahasram, Badri; Conti, David V; Farber, Harold J; Avila, Pedro; Brigino-Buenaventura, Emerita; Lenoir, Michael; Meade, Kelley; Serebrisky, Denise; Borrell, Luisa N; Rodriguez-Cintron, William; Thyne, Shannon; Joubert, Bonnie R; Romieu, Isabelle; Levin, Albert M; Sienra-Monge, Juan-Jose; Del Rio-Navarro, Blanca Estela; Gan, Weiniu; Raby, Benjamin A; Weiss, Scott T; Bleecker, Eugene; Meyers, Deborah A; Martinez, Fernando J; Gauderman, W James; Gilliland, Frank; London, Stephanie J; Bustamante, Carlos D; Nicolae, Dan L; Ober, Carole; Sen, Saunak; Barnes, Kathleen; Williams, L Keoki; Hernandez, Ryan D; Burchard, Esteban G
  3. Journal of Allergy and Clinical Immunology. 2019, Mar; 143(3): 957-969.
  1. 19.   Combined somatic mutation and copy number analysis in the survival of familial CLL
  2. Zhou, Weiyin; Goldin, Lynn; Wang, Mingyi; McMaster, Mary L; Jones, Kristine; Burdett, Laurie; Chanock, Stephen J; Yeager, Meredith; Dean, Michael; Caporaso, Neil E
  3. British Journal of Haematology. 2018, Jun; 181(5): 604-613.
  1. 20.   Higher-than-expected population prevalence of potentially pathogenic germline TP53 variants in individuals unselected for cancer history
  2. de Andrade, Kelvin Cesar; Mirabello, Lisa; Stewart, Douglas R.; Karlins, Eric; Koster, Roelof; Wang, Mingyi; Gapstur, Susan M.; Gaudet, Mia M.; Freedman, Neal D.; Landi, Maria Teresa; Lemonnier, Nathanael; Hainaut, Pierre; Savage, Sharon A.; Achatz, Maria Isabel
  3. Human Mutation. 2017, Dec; 38(12): 1723-1730.
  1. 21.   Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies
  2. Wang, Zhaoming; Dai, Juncheng; Hu, Nan; Miao, Xiaoping; Abnet, Christian C.; Yang, Ming; Freedman, Neal D.; Chen, Jinfei; Burdette, Laurie; Zhu, Xun; Chung, Charles; Ren, Chuanli; Dawsey, Sanford M.; Wang, Meilin; Ding, Ti; Du, Jiangbo; Gao, Yu-Tang; Zhong, Rong; Giffen, Carol; Pan, Wenting; Koh, Woon-Puay; Dai, Ningbing; Liao, Linda M.; Yan, Caiwang; Qiao, You-Lin; Jiang, Yue; Shu, Xiao-Ou; Chen, Jiaping; Wang, Chaoyu; Ma, Hongxia; Su, Hua; Zhang, Zhendong; Wang, Lemin; Wu, Chen; Xiang, Yong-Bing; Hu, Zhibin; Yuan, Jian-Min; Xie, Lu; Zheng, Wei; Lin, Dongxin; Chanock, Stephen J.; Shi, Yongyong; Goldstein, Alisa M.; Jin, Guangfu; Taylor, Philip R.; Shen, Hongbing
  3. GUT. 2017, 2017-04-01; 66(4): 581-587.
  1. 22.   Interactions between breast cancer susceptibility loci and menopausal hormone therapy in relationship to breast cancer in the Breast and Prostate Cancer Cohort Consortium
  2. Gaudet, M. M.; Barrdahl, M.; Lindstrom, S.; Travis, R. C.; Auer, P. L.; Buring, J. E.; Chanock, S. J.; Eliassen, A. H.; Gapstur, S. M.; Giles, G. G.; Gunter, M.; Haiman, C.; Hunter, D. J.; Joshi, A. D.; Kaaks, R.; Khaw, K. T.; Lee, I. M.; Le March, L.; Milne, R. L.; Peeters, P. H.; Sund, M.; Tamimi, R.; Trichopoulou, A.; Weiderpass, E.; Yang, X. R.; Prentice, R. L.; Feigelson, H. S.; Canzian, F.; Kraft, P.
  3. Breast Cancer Research and Treatment. 2016, Feb; 155(3): 531-40.
  1. 23.   Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue
  2. Shi, J.; Marconett, C. N.; Duan, J.; Hyl, P. L.; Li, P.; Wang, Z.; Wheeler, W.; Zhou, B.; Campan, M.; Lee, D. S.; Huang, J.; Zhou, W.; Triche, T.; Amundadottir, L.; Warner, A.; Hutchinson, A.; Chen, P. H.; Chung, B. S.; Pesatori, A. C.; Consonni, D.; Bertazzi, P. A.; Bergen, A. W.; Freedman, M.; Siegmund, K. D.; Berman, B. P.; Borok, Z.; Chatterjee, N.; Tucker, M. A.; Caporaso, N. E.; Chanock, S. J.; Laird-Offringa, I. A.; Landi, M. T.
  3. Nature Communications. 2014, 27-Feb; 5: 3365.
  1. 24.   Taxonomic revision of the genus Galictis (Carnivora: Mustelidae): species delimitation, morphological diagnosis, and refined mapping of geographical distribution
  2. Bornholdt, R.; Helgen, K.; Koepfli, K. P.; Oliveira, L.; Lucherini, M.; Eizirik, E.
  3. Zoological Journal of the Linnean Society. 2013, Mar; 167(3): 449-472.
  1. 25.   XMRV and prostate cancer-a 'final' perspective
  2. Sfanos, K. S.; Aloia, A. L.; De Marzo, A. M.; Rein, A.
  3. Nature Reviews Urology. 2012, Feb; 9(2): 111-118.
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