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  1. 1.   Noncanonical circRNA biogenesis driven by alpha and gamma herpesviruses
  2. Dremel, Sarah E; Koparde,Vishal; Arbuckle, Jesse H; Hogan, Chad H; Kristie, Thomas M; Krug, Laurie T; Conrad, Nicholas K; Ziegelbauer, Joseph M
  3. The EMBO Journal. 2025, Mar 03;
  1. 2.   The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A
  2. Kochen Rossi, Juan; Nuevo-Tapioles, Cristina; O'Keefe, Rachel A; Hunkeler, Moritz; Schmoker, Anna M; Fissore-O'Leary, Mercedes; Su, Wenjuan; Ahearn, Ian M; Branco, Cristina; Cheong, Hakyung; Esposito,Dom; Clotea, Ioana; Ueberheide, Beatrix; Fischer, Eric S; Philips, Mark R
  3. Cell Reports. 2024, Dec 19; 44(1): 115087.
  1. 3.   Genome-scale exon perturbation screens uncover exons critical for cell fitness
  2. Xiao,Meisheng; Damodaran,Arun Prasath; Kumari,Bandana; Dickson, Ethan; Xing, Kun; On, Tyler A; Parab, Nikhil; King, Helen E; Perez, Alexendar R; Guiblet,Wilfried; Duncan,Gerard; Che,Anney; Chari,Raj; Andresson,Thorkell; Vidigal, Joana A; Weatheritt, Robert J; Aregger,Michael; Gonatopoulos Pournatzis,Thomas
  3. Molecular Cell. 2024, Jul 11; 84(13): 2553-2572.
  1. 4.   Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia
  2. Kashyap, Manoj Kumar; Karathia,Hiren; Kumar, Deepak; Vera Alvarez, Roberto; Forero-Forero, Jose Vicente; Moreno, Eider; Lujan, Juliana Velez; Amaya-Chanaga, Carlos Ivan; Vidal, Newton Medeiros; Yu, Zhe; Ghia, Emanuela M; Lengerke-Diaz, Paula A; Achinko, Daniel; Choi, Michael Y; Rassenti, Laura Z; Mariño-Ramírez, Leonardo; Mount, Stephen M; Hannenhalli, Sridhar; Kipps, Thomas J; Castro, Januario E
  3. Molecular Therapy. Nucleic acids. 2024, Jun 11; 35(2): 102202.
  1. 5.   CD47-Dependent Regulation of Immune Checkpoint Gene Expression and MYCN mRNA Splicing in Murine CD8 and Jurkat T Cells
  2. Kaur, Sukhbir; Awad, Duha; Finney, Richard P; Meyer, Thomas J; Singh, Satya P; Cam, Margaret C; Karim,Baktiar; Warner,Andrew; Roberts, David D
  3. International Journal of Molecular Sciences. 2023, Jan 30; 24(3):
  1. 6.   Context-Dependent Function of Long Noncoding RNA PURPL in Transcriptome Regulation during p53 Activation
  2. Hartford, Corrine Corrina R; Shrestha, Roshan L; Pongor, Lorinc; Zhao,Yongmei; Chen, Xiongfong; Fromont,Caroline; Chaudhary, Ritu; Li, Xiao Ling; Pasterczyk, Katherine R; Kumar, Ravi; Muys, Bruna R; Tsitsipatis, Dimitrios; Chari,Raj; Gorospe, Myriam; Aladjem, Mirit I; Khan, Javed; Basrai, Munira A; Grammatikakis, Ioannis; Lal, Ashish
  3. Molecular and Cellular Biology. 2022, Nov 07; 42(12): e0028922.
  1. 7.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 8.   Flexible pri-miRNA structures enable tunable production of 5' isomiRs
  2. Bofill De Ros,Xavier; Hong,Zhenyi; Birkenfeld, Ben; Alamo-Ortiz,Sarangelica; Yang,Acong; Dai,Lisheng; Gu,Shuo
  3. RNA Biology. 2022, Jan; 19(1): 279-289.
  1. 9.   Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability
  2. Sebastian, Robin; Hosogane, Eri K; Sun, Eric G; Tran, Andy D; Reinhold, William C; Burkett,Sandra; Sturgill, David M; Gudla, Prabhakar R; Pommier, Yves; Aladjem, Mirit I; Oberdoerffer, Philipp
  3. Molecular cell. 2020, SEP 3; 79(5): 836-+.
  1. 10.   Novel, abundant Drosha isoforms are deficient in miRNA processing in cancer cells
  2. Dai,Lisheng; Hallmark, Lillian; Bofill De Ros,Xavier; Crouch, Howard; Chen, Sean; Shi, Tony; Yang,Acong; Lian, Chuanjiang; Zhao,Yongmei; Tran,Bao; Gu,Shuo
  3. RNA biology. 2020, AUG 31;
  1. 11.   Tuning of NK-Specific HLA-C Expression by Alternative mRNA Splicing
  2. Goodson-Gregg,Joseph; Rothbard,Brian; Zhang, Amy; Wright,Paul; Li,Hongchuan; Walker-Sperling,Victoria; Carrington,Mary; Anderson,Steve
  3. Frontiers in immunology. 2020, JAN 10; 10: 3034.
  1. 12.   The Human TET2 Gene Contains Three Distinct Promoter Regions With Differing Tissue and Developmental Specificities
  2. Lou,Hong; Li,Hongchuan; Ho, Kevin J.; Cai, Luke L.; Huang, Andy S.; Shank, Tyler R.; Verneris, Michael R.; Nickerson, Michael L.; Dean, Michael; Anderson,Steve
  3. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 2019, Jun 7; 7
  1. 13.   Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect
  2. Singh, Smriti; Narayanan, Sathiya Pandi; Biswas, Kajal; Gupta, Amit; Ahuja, Neha; Yadav, Sandhya; Panday, Rajendra Kumar; Samaiya, Atul; Sharan, Shyam; Shukla, Sanjeev
  3. Proceedings of the National Academy of Sciences of the United States of America. 2017, Oct 24; 114(43): 11440-11445.
  1. 14.   Autocrine IL-10 functions as a rheostat for M1 macrophage glycolytic commitment by tuning nitric oxide production
  2. Baseler, Walter; Davies, Luke; Quigley, L.; Ridnour, Lisa; Weiss, Jonathan; Hussain, S. P.; Wink, David; McVicar, Daniel
  3. Redox biology. 2016, Dec; 10: 12-23.
  1. 15.   Direct Regulation of Alternative Splicing by SMAD3 through PCBP1 Is Essential to the Tumor-Promoting Role of TGF-beta
  2. Tripathi, V.; Sixt, K. M.; Gao, S.; Xu, X.; Huang, J.; Weigert, R.; Zhou, M.; Zhang, Y. E.
  3. Molecular Cell. 2016, 4-Oct; 64(3): 549-564.
  1. 16.   Interleukin 4 induces the apoptosis of mouse microglial cells by a caspase-dependent mechanism
  2. Soria, J. A.; Arroyo, D. S.; Gaviglio, E. A.; Rodriguez-Galan, M. C.; Wang, J. M.; Iribarren, P.
  3. Neurobiology of Disease. 2011, Sep; 43(3): 616-624.
  1. 17.   Nanotoxicology: "The End of the Beginning" - Signs on the Roadmap to a Strategy for Assuring the Safe Application and Use of Nanomaterials
  2. Silbergeld, E. K.; Contreras, E. Q.; Hartung, T.; Hirsch, C.; Hogberg, H.; Jachak, A. C.; Jordan, W.; Landsiedel, R.; Morris, J.; Patri, A.; Pounds, J. G.; Ruiz, A. D.; Shvedova, A.; Tanguay, R.; Tatarazako, N.; van Vliet, E.; Walker, N. J.; Wiesner, M.; Wilcox, N.; Zurlo, J.
  3. Altex-Alternatives to Animal Experimentation. 2011 28(3): 236-241.
  1. 18.   Alternative transcripts expressed by small bristles, the Drosophila melanogaster nxf1 gene
  2. Ivankova, N.; Tretyakova, I.; Lyozin, G. T.; Avanesyan, E.; Zolotukhin, A.; Zatsepina, O. G.; Evgen'ev, M. B.; Mamon, L. A.
  3. Gene. 2010, Jun; 458(1-2): 11-19.
  1. 19.   Molecular mediators of macrophage fusion
  2. Helming, L.; Gordon, S.
  3. Trends in Cell Biology. 2009 19(10): 514-522.
  1. 20.   Molecular cloning of a brain-specific, developmentally regulated neuregulin 1 (NRG1) isoform and identification of a functional promoter variant associated with schizophrenia
  2. Tan, W.; Wang, Y. H.; Gold, B.; Chen, J. S.; Dean, M.; Harrison, P. J.; Weinberger, D. R.; Law, A. J.
  3. Journal of Biological Chemistry. 2007, Aug; 282(33): 24343-24351.
  1. 21.   RNA regulation and cancer development
  2. Scholzova, E.; Malik, R.; Sevcik, J.; Kleibl, Z.
  3. Cancer Letters. 2007, Feb; 246(1-2): 12-23.
  1. 22.   NK cell-derived IFN-gamma differentially regulates innate resistance and neutrophil response in T cell-deficient hosts infected with Mycobacterium tuberculosis
  2. Feng, C. G.; Kaviratne, M.; Rothfuchs, A. G.; Cheever, A.; Hieny, S.; Young, H. A.; Wynn, T. A.; Sher, A.
  3. Journal of Immunology. 2006, Nov; 177(10): 7086-7093.
  1. 23.   A distinct and unique transcriptional program expressed by tumor-associated macrophages (defective NF-kappa B and enhanced IRF-3/STAT1 activation)
  2. Biswas, S. K.; Gangi, L.; Paul, S.; Schioppa, T.; Saccani, A.; Sironi, M.; Bottazzi, B.; Doni, A.; Vincenzo, B.; Pasqualini, F.; Vago, L.; Nebuloni, M.; Mantovani, A.; Sica, A.
  3. Blood. 2006, Mar; 107(5): 2112-2122.
  1. 24.   Extended haplotypes in the complement factor H (CFH) and CFH-related (CFHR) family of genes protect against age-related macular degeneration: Characterization, ethnic distribution and evolutionary implications
  2. Hageman, G. S.; Hancox, L. S.; Taiber, A. J.; Gehrs, K. M.; Anderson, D. H.; Johnson, L. V.; Radeke, M. J.; Kavanagh, D.; Richards, A.; Atkinson, J.; Meri, S.; Bergeron, J.; Zernant, J.; Merriam, J.; Gold, B.; Allikmets, R.; Dean, Michael; Grp, A. M. D. C. S.
  3. Annals of Medicine. 2006 38(8): 592-604.
  1. 25.   A common haplotype in the complement regulatory gene factor H (HF1/CFH) predisposes individuals to age-related macular degeneration
  2. Hageman, G. S.; Anderson, D. H.; Johnson, L. V.; Hancox, L. S.; Taiber, A. J.; Hardisty, L. I.; Hageman, J. L.; Stockman, H. A.; Borchardt, J. D.; Gehrs, K. M.; Smith, R. J. H.; Silvestri, G.; Russell, S. R.; Klaver, C. C. W.; Barbazetto, I.; Chang, S.; Yannuzzi, L. A.; Barile, G. R.; Merriam, J. C.; Smith, R. T.; Olsh, A. K.; Bergeron, J.; Zernant, J.; Merriam, J. E.; Gold, B.; Dean, M.; Allikmets, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, MAY 17; 102(20): 7227-7232.
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