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  1. 1.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 2.   Regulation of senescence and the SASP by the transcription factor C/EBP beta
  2. Salotti,Jacqueline; Johnson,Peter
  3. Experimental gerontology. 2019, Dec; 128
  1. 3.   Restriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences
  2. Schneider,Tom; Jejjala, Vishnu
  3. PloS one. 2019, OCT 31; 14(10): e0222419.
  1. 4.   Investigation of F-BAR domain PACSIN proteins uncovers membrane tubulation function in cilia assembly and transport
  2. Insinna, Christine; Lu,Quanlong; Teixeira, Isabella; Harned,Adam; Semler, Elizabeth M.; Stauffer,Jimmy; Magidson,Valentin; Tiwari, Ajit; Kenworthy, Anne K.; Narayan,Kedar; Westlake,Christopher
  3. Nature communications. 2019, Jan 25; 10(1):
  1. 5.   Deducing putative ancestral forms of GNRA/receptor interactions from the ribosome
  2. Calkins, Erin R.; Zakrevsky,Paul; Keleshian, Vasken L.; Aguilar, Eduardo G.; Geary, Cody; Jaeger, Luc
  3. NUCLEIC ACIDS RESEARCH. 2019, Jan 10; 47(1): 480-494.
  1. 6.   Blind prediction of noncanonical RNA structure at atomic accuracy
  2. Watkins, Andrew M.; Geniesse, Caleb; Kladwang, Wipapat; Zakrevsky, Paul; Jaeger, Luc; Das, Rhiju
  3. Science Advances. 2018, May 25; 4(5): eaar5316.
  1. 7.   C/EBP beta regulates delta-secretase expression and mediates pathogenesis in mouse models of Alzheimer's disease
  2. Wang, Zhi-Hao; Gong, Ke; Liu, Xia; Zhang, Zhentao; Sun, Xiaoou; Wei, Zheng Zachory; Yu, Shan Ping; Manfredsson, Fredric P.; Sandoval, Ivette M.; Johnson, Peter; Jia, Jianping; Wang, Jian-Zhi; Ye, Keqiang
  3. NATURE COMMUNICATIONS. 2018, May 3; 9
  1. 8.   Growth rate regulation in Escherichia coli
  2. Jin, D. J.; Cagliero, C.; Zhou, Y. N.
  3. FEMS Microbiology Reviews. 2012, Mar; 36(2): 269-287.
  1. 9.   Atomic Force Microscopy and MD Simulations Reveal Pore-Like Structures of All-D-Enantiomer of Alzheimer's beta-Amyloid Peptide: Relevance to the Ion Channel Mechanism of AD Pathology
  2. Connelly, L.; Jang, H.; Arce, F. T.; Capone, R.; Kotler, S. A.; Ramachandran, S.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Journal of Physical Chemistry B. 2012, Feb; 116(5): 1728-1735.
  1. 10.   Cyclostreptin Derivatives Specifically Target Cellular Tubulin and Further Map the Paclitaxel Site
  2. Calvo, E.; Barasoain, I.; Matesanz, R.; Pera, B.; Camafeita, E.; Pineda, O.; Hamel, E.; Vanderwal, C. D.; Andreu, J. M.; Lopez, J. A.; Diaz, J. F.
  3. Biochemistry. 2012, Jan; 51(1): 329-341.
  1. 11.   Identification of a Src Tyrosine Kinase/SIAH2 E3 Ubiquitin Ligase Pathway That Regulates C/EBP delta Expression and Contributes to Transformation of Breast Tumor Cells
  2. Sarkar, T. R.; Sharan, S.; Wang, J.; Pawar, S. A.; Cantwell, C. A.; Johnson, P. F.; Morrison, D. K.; Wang, J. M.; Sterneck, E.
  3. Molecular and Cellular Biology. 2012, Jan; 32(2): 320-332.
  1. 12.   Small molecule inhibitors of ezrin inhibit the invasive phenotype of osteosarcoma cells
  2. Bulut, G.; Hong, S. H.; Chen, K.; Beauchamp, E. M.; Rahim, S.; Kosturko, G. W.; Glasgow, E.; Dakshanamurthy, S.; Lee, H. S.; Daar, I.; Toretsky, J. A.; Khanna, C.; Uren, A.
  3. Oncogene. 2012, Jan; 31(3): 269-281.
  1. 13.   C/EBP-delta regulates VEGF-C autocrine signaling in lymphangiogenesis and metastasis of lung cancer through HIF-1 alpha
  2. Min, Y.; Ghose, S.; Boelte, K.; Li, J.; Yang, L.; Lin, P. C.
  3. Oncogene. 2011, Dec; 30(49): 4901-4909.
  1. 14.   An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe
  2. Saio, T.; Ogura, K.; Shimizu, K.; Yokochi, M.; Burke, T. R.; Inagaki, F.
  3. Journal of Biomolecular Nmr. 2011, Nov; 51(3): 395-408.
  1. 15.   3 ' UTR elements inhibit Ras-induced C/EBP beta post-translational activation and senescence in tumour cells
  2. Basu, S. K.; Malik, R.; Huggins, C. J.; Lee, S.; Sebastian, T.; Sakchaisri, K.; Quinones, O. A.; Alvord, W. G.; Johnson, P. F.
  3. Embo Journal. 2011, Sep; 30(18): 3714-3728.
  1. 16.   Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
  2. Tuncbag, N.; Gursoy, A.; Nussinov, R.; Keskin, O.
  3. Nature Protocols. 2011, Sep; 6(9): 1341-1354.
  1. 17.   Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities
  2. Ying, J. F.; Wang, J. B.; Grishaev, A.; Yu, P.; Wang, Y. X.; Bax, A.
  3. Journal of Biomolecular Nmr. 2011, Sep; 51(1-2): 89-103.
  1. 18.   HIV-1 adaptation to NK-cell-mediated immune pressure
  2. Alter, G.; Heckerman, D.; Schneidewind, A.; Fadda, L.; Kadie, C. M.; Carlson, J. M.; Oniangue-Ndza, C.; Martin, M.; Li, B.; Khakoo, S. I.; Carrington, M.; Allen, T. M.; Altfeld, M.
  3. Nature. 2011, Aug; 476(7358): 96-+.
  1. 19.   HIV-1 Nucleocapsid Protein Increases Strand Transfer Recombination by Promoting Dimeric G-quartet Formation
  2. Shen, W.; Gorelick, R. J.; Bambara, R. A.
  3. Journal of Biological Chemistry. 2011, Aug; 286(34): 29838-29847.
  1. 20.   ASPS-1, A Novel Cell Line Manifesting Key Features of Alveolar Soft Part Sarcoma
  2. Kenney, S.; Vistica, D. T.; Stockwin, L. H.; Burkett, S.; Hollingshead, M. G.; Borgel, S. D.; Butcher, D. O.; Schrump, D. S.; Shoemaker, R. H.
  3. Journal of Pediatric Hematology Oncology. 2011, Jul; 33(5): 360-368.
  1. 21.   Recognition of Multivalent Histone States Associated with Heterochromatin by UHRF1 Protein
  2. Nady, N.; Lemak, A.; Walker, J. R.; Avvakumov, G. V.; Kareta, M. S.; Achour, M.; Xue, S.; Duan, S. L.; Allali-Hassani, A.; Zuo, X. B.; Wang, Y. X.; Bronner, C.; Chedin, F.; Arrowsmith, C. H.; Dhe-Paganon, S.
  3. Journal of Biological Chemistry. 2011, Jul; 286(27): 24300-24311.
  1. 22.   Diverse interactions of retroviral Gag proteins with RNAs
  2. Rein, A.; Datta, S. A. K.; Jones, C. P.; Musier-Forsyth, K.
  3. Trends in Biochemical Sciences. 2011, Jul; 36(7): 373-380.
  1. 23.   Suppression of the C/EBP family of transcription factors in adipose tissue causes lipodystrophy
  2. Chatterjee, R.; Bhattacharya, P.; Gavrilova, O.; Glass, K.; Moitra, J.; Myakishev, M.; Pack, S.; Jou, W.; Feigenbaum, L.; Eckhaus, M.; Vinson, C.
  3. Journal of Molecular Endocrinology. 2011, Jun; 46(3): 175-192.
  1. 24.   Interactions of Halichondrin B and Eribulin with Tubulin
  2. Bai, R. L.; Nguyen, T. L.; Burnett, J. C.; Atasoylu, O.; Munro, M. H. G.; Pettit, G. R.; Smith, A. B.; Gussio, R.; Hamel, E.
  3. Journal of Chemical Information and Modeling. 2011, Jun; 51(6): 1393-1404.
  1. 25.   RanBPM is essential for mouse spermatogenesis and oogenesis
  2. Puverel, S.; Barrick, C.; Dolci, S.; Coppola, V.; Tessarollo, L.
  3. Development. 2011, Jun; 138(12): 2511-2521.
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