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  1. 1.   Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities
  2. Desai, Parth; Takahashi, Nobuyuki; Kumar, Rajesh; Nichols, Samantha; Malin, Justin; Hunt, Allison; Schultz, Christopher; Cao, Yingying; Tillo, Desiree; Nousome, Darryl; Chauhan, Lakshya; Sciuto, Linda; Jordan, Kimberly; Rajapakse, Vinodh; Tandon, Mayank; Lissa, Delphine; Zhang, Yang; Kumar, Suresh; Pongor, Lorinc; Singh, Abhay; Schroder, Brett; Sharma, Ajit Kumar; Chang, Tiangen; Vilimas, Rasa; Pinkiert, Danielle; Graham, Chante; Butcher,Donna; Warner,Andrew; Sebastian, Robin; Mahon, Mimi; Baker, Karen; Cheng, Jennifer; Berger, Ann; Lake, Ross; Abel, Melissa; Krishnamurthy, Manan; Chrisafis, George; Fitzgerald, Peter; Nirula, Micheal; Goyal, Shubhank; Atkinson, Devon; Bateman, Nicholas W; Abulez, Tamara; Nair, Govind; Apolo, Andrea; Guha, Udayan; Karim,Baktiar; El Meskini,Rajaa; Ohler,Zoe; Jolly, Mohit Kumar; Schaffer, Alejandro; Ruppin, Eytan; Kleiner, David; Miettinen, Markku; Brown, G Tom; Hewitt, Stephen; Conrads, Thomas; Thomas, Anish
  3. Cell Reports. Medicine. 2024, Jun 18; 5(6): 101610.
  1. 2.   Novel subtypes of severe COVID-19 respiratory failure based on biological heterogeneity: a secondary analysis of a randomized controlled trial
  2. Alipanah-Lechner, Narges; Hurst-Hopf, James; Delucchi, Kevin; Swigart, Lamorna; Willmore, Andrew; LaCombe, Benjamin; Dewar,Robin; Lane, H Clifford; Lallemand, Perrine; Liu, Kathleen D; Esserman, Laura; Matthay, Michael A; Calfee, Carolyn S
  3. Critical Care (London, England). 2024, Feb 21; 28(1): 56.
  1. 3.   Lineage and ecology define liver tumor evolution in response to treatment
  2. Revsine, Mahler; Wang, Limin; Forgues, Marshonna; Behrens, Shay; Craig, Amanda J; Liu, Meng; Tran,Bao; Kelly,Michael; Budhu, Anuradha; Monge, Cecilia; Xie, Changqing; Hernandez, Jonathan M; Greten, Tim F; Wang, Xin Wei; Ma, Lichun
  3. Cell Reports. Medicine. 2024, Feb 20; 5(2): 101394.
  1. 4.   Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness
  2. Li, Yize; Lih, Tung-Shing M; Dhanasekaran, Saravana M; Mannan, Rahul; Chen, Lijun; Cieslik, Marcin; Wu, Yige; Lu, Rita Jiu-Hsien; Clark, David J; Kolodziejczak, Iga; Hong, Runyu; Chen, Siqi; Zhao, Yanyan; Chugh, Seema; Caravan, Wagma; Naser Al Deen, Nataly; Hosseini, Noshad; Newton, Chelsea J; Krug, Karsten; Xu, Yuanwei; Cho, Kyung-Cho; Hu, Yingwei; Zhang, Yuping; Kumar-Sinha, Chandan; Ma, Weiping; Calinawan, Anna; Wyczalkowski, Matthew A; Wendl, Michael C; Wang, Yuefan; Guo, Shenghao; Zhang, Cissy; Le, Anne; Dagar, Aniket; Hopkins, Alex; Cho, Hanbyul; Leprevost, Felipe da Veiga; Jing, Xiaojun; Teo, Guo Ci; Liu, Wenke; Reimers, Melissa A; Pachynski, Russell; Lazar, Alexander J; Chinnaiyan, Arul M; Van Tine, Brian A; Zhang, Bing; Rodland, Karin D; Getz, Gad; Mani, D R; Wang, Pei; Chen, Feng; Hostetter, Galen; Thiagarajan,Mathangi; Linehan, W Marston; Fenyö, David; Jewell, Scott D; Omenn, Gilbert S; Mehra, Rohit; Wiznerowicz, Maciej; Robles, Ana I; Mesri, Mehdi; Hiltke, Tara; An, Eunkyung; Rodriguez, Henry; Chan, Daniel W; Ricketts, Christopher J; Nesvizhskii, Alexey I; Zhang, Hui; Ding, Li
  3. Cancer Cell. 2023, Jan 9; 41(1): 139-163.
  1. 5.   CpG Site-Specific Methylation-Modulated Divergent Expression of PRSS3 Transcript Variants Facilitates Nongenetic Intratumor Heterogeneity in Human Hepatocellular Carcinoma
  2. Lin, Shuye; Xu, Hanli; Pang, Mengdi; Zhou, Xiaomeng; Pan, Yuanming; Zhang, Lishu; Guan, Xin; Wang, Xiaoyue; Lin, Bonan; Tian, Rongmeng; Chen,Keqiang; Zhang, Xiaochen; Yang, Zijiang; Ji, Fengmin; Huang, Yingying; Wei, Wu; Gong,Wang; Ren, Jianke; Wang,Jiming; Guo, Mingzhou; Huang, Jiaqiang
  3. Frontiers in Oncology. 2022, Apr 11; 12: 831268.
  1. 6.   Single-cell atlas of tumor cell evolution in response to therapy in hepatocellular carcinoma and intrahepatic cholangiocarcinoma
  2. Ma, Lichun; Wang, Limin; Khatib, Subreen A; Chang, Ching-Wen; Heinrich, Sophia; Dominguez, Dana A; Forgues, Marshonna; Candia, Julián; Hernandez,Maria; Kelly,Michael; Zhao,Yongmei; Tran,Bao; Hernandez, Jonathan M; Davis, Jeremy L; Kleiner, David E; Wood, Bradford J; Greten, Tim F; Wang, Xin Wei
  3. Journal of Hepatology. 2021, Dec; 75(6): 1397-1408.
  1. 7.   Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing
  2. Fang, Li Tai; Zhu, Bin; Zhao,Yongmei; Chen, Wanqiu; Yang, Zhaowei; Kerrigan, Liz; Langenbach, Kurt; de Mars, Maryellen; Lu, Charles; Idler, Kenneth; Jacob, Howard; Zheng, Yuanting; Ren, Luyao; Yu, Ying; Jaeger, Erich; Schroth, Gary P.; Abaan, Ogan D.; Talsania,Keyur; Lack,Justin; Shen,Tsai-Wei; Chen, Zhong; Stanbouly, Seta; Tran,Bao; Shetty,Jyoti; Kriga,Yuliya; Meerzaman, Daoud; Nguyen, Cu; Petitjean, Virginie; Sultan, Marc; Cam, Margaret; Mehta,Monika; Hung, Tiffany; Peters, Eric; Kalamegham, Rasika; Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Guo, Yunfei; Yao, Lijing; Song, Lei; Lam, Hugo Y. K.; Drabek, Jiri; Vojta, Petr; Maestro, Roberta; Gasparotto, Daniela; Koks, Sulev; Reimann, Ene; Scherer, Andreas; Nordlund, Jessica; Liljedahl, Ulrika; Jensen, Roderick; Pirooznia, Mehdi; Li, Zhipan; Xiao, Chunlin; Sherry, Stephen T.; Kusko, Rebecca; Moos, Malcolm; Donaldson, Eric; Tezak, Zivana; Ning, Baitang; Tong, Weida; Li, Jing; Duerken-Hughes, Penelope; Catalanotti, Claudia; Maheshwari, Shamoni; Shuga, Joe; Liang, Winnie S.; Keats, Jonathan; Adkins, Jonathan; Tassone, Erica; Zismann, Victoria; McDaniel, Timothy; Trent, Jeffrey; Foox, Jonathan; Butler, Daniel; Mason, Christopher E.; Hong, Huixiao; Shi, Leming; Wang, Charles; Xiao, Wenming
  3. Nature biotechnology. 2021, Sep; 39(9): 1151-1160.
  1. 8.   Clinical Implications of Inter- and Intra-Tumor Heterogeneity of Immune Cell Markers in Lung Cancer
  2. Zhao, Wei; Zhu, Bin; Hutchinson,Amy; Pesatori, Angela Cecilia; Consonni, Dario; Caporaso, Neil E; Zhang, Tongwu; Wang,Difei; Shi, Jianxin; Landi, Maria Teresa
  3. Journal of the National Cancer Institute. 2021, Aug 17;
  1. 9.   Differential MUC22 expression by epigenetic alterations in human lung squamous cell carcinoma and adenocarcinoma
  2. Lin, Shuye; Tian, Cuimeng; Li, Jianhui; Liu, Bin; Ma, Teng; Chen,Keqiang; Gong,Wang; Wang,Jiming; Huang, Jiaqiang
  3. Oncology Reports. 2021, May; 45(5):
  1. 10.   A network-based deep learning methodology for stratification of tumor mutations
  2. Liu, Chuang; Han, Zhen; Zhang, Zi-Ke; Nussinov,Ruth; Cheng, Feixiong
  3. Bioinformatics. 2021, Jan 08; 37(1): 82-88.
  1. 11.   Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts
  2. Woo, Xing Yi; Giordano, Jessica; Srivastava, Anuj; Zhao, Zi-Ming; Lloyd, Michael W.; de Bruijn, Roebi; Suh, Yun-Suhk; Patidar, Rajesh; Chen,Li; Scherer, Sandra; Bailey, Matthew H.; Yang, Chieh-Hsiang; Cortes-Sanchez, Emilio; Xi, Yuanxin; Wang, Jing; Wickramasinghe, Jayamanna; Kossenkov, Andrew V.; Rebecca, Vito W.; Sun, Hua; Mashl, R. Jay; Davies, Sherri R.; Jeon, Ryan; Frech, Christian; Randjelovic, Jelena; Rosains, Jacqueline; Galimi, Francesco; Bertotti, Andrea; Lafferty, Adam; O'Farrell, Alice C.; Modave, Elodie; Lambrechts, Diether; ter Brugge, Petra; Serra, Violeta; Marangoni, Elisabetta; El Botty, Rania; Kim, Hyunsoo; Kim, Jong-Il; Yang, Han-Kwang; Lee, Charles; Dean, Dennis A.; Davis-Dusenbery, Brandi; Evrard, Yvonne A.; Doroshow, James H.; Welm, Alana L.; Welm, Bryan E.; Lewis, Michael T.; Fang, Bingliang; Roth, Jack A.; Meric-Bernstam, Funda; Herlyn, Meenhard; Davies, Michael A.; Ding, Li; Li, Shunqiang; Govindan, Ramaswamy; Isella, Claudio; Moscow, Jeffrey A.; Trusolino, Livio; Byrne, Annette T.; Jonkers, Jos; Bult, Carol J.; Medico, Enzo; Chuang, Jeffrey H.
  3. Nature Genetics. 2021, Jan; 53(1): 86-99.
  1. 12.   Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy
  2. Woodcock, D J; Riabchenko, E; Taavitsainen, S; Kankainen, M; Gundem, G; Brewer, D S; Ellonen, P; Lepistö, M; Golubeva, Y A; Warner,Andrew; Tolonen, T; Jasu, J; Isaacs, W B; Emmert-Buck, M R; Nykter, M; Visakorpi, T; Bova, G S; Wedge, D C
  3. Nature communications. 2020, OCT 8; 11(1): 5070.
  1. 13.   The genomic and epigenomic evolutionary history of papillary renal cell carcinomas
  2. Zhu, Bin; Poeta, Maria Luana; Costantini, Manuela; Zhang, Tongwu; Shi, Jianxin; Sentinelli, Steno; Zhao, Wei; Pompeo, Vincenzo; Cardelli, Maurizio; Alexandrov, Boian S; Otlu, Burcak; Hua, Xing; Jones,Kristine; Brodie,Seth; Dabrowska, Malgorzata Ewa; Toro, Jorge R; Yeager,Meredith; Wang,Mingyi; Hicks,Belynda; Alexandrov, Ludmil B; Brown, Kevin M; Wedge, David C; Chanock, Stephen; Fazio, Vito Michele; Gallucci, Michele; Landi, Maria Teresa
  3. Nature communications. 2020, Jun 18; 11(1): 3096.
  1. 14.   Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis
  2. Evrard,Yvonne; Srivastava, Anuj; Randjelovic, Jelena; Consortium, Nci PDXNet; Doroshow, James H; Dean, Dennis A; Morris, Jeffrey S; Chuang, Jeffrey H
  3. Cancer research. 2020, JUN 1; 80(11): 2286-2297.
  1. 15.   State of the Art: Toward Improving Outcomes of Lung and Liver Tumor Biopsies in Clinical Trials-A Multidisciplinary Approach
  2. Levy, Elliot B; Fiel, Maria I; Hamilton, Stanley R; Kleiner, David E; McCall, Shannon J; Schirmacher, Peter; Travis, William; Kuo, Michael D; Suh, Robert D; Tam, Alda L; Islam, Shaheen U; Ferry-Galow,Katherine; Enos, Rebecca A; Doroshow, James H; Makhlouf, Hala R
  3. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2020, MAY 10; 38(14): 1633-+.
  1. 16.   Differential Expression of the Transcription Factor GATA3 Specifies Lineage and Functions of Innate Lymphoid Cells
  2. Zhong, Chao; Zheng, Mingzhu; Cui, Kairong; Martins, Andrew J; Hu, Gangqing; Li, Dan; Tessarollo,Lino; Kozlov,Serguei; Keller,Jonathan; Tsang, John S; Zhao, Keji; Zhu, Jinfang
  3. Immunity. 2020, JAN 14; 52(1): 83-+.
  1. 17.   Circulating androgens and postmenopausal ovarian cancer risk in the Women's Health Initiative Observational Study
  2. Trabert, Britton; Michels, Kara A; Anderson, Garnet L; Brinton, Louise A; Falk, Roni T; Geczik, Ashley M; Harris, Holly R; Pan, Kathy; Pfeiffer, Ruth M; Qi, Lihong; Rohan, Thomas; Wentzensen, Nicolas; Xu,Xia
  3. International journal of cancer. 2019, Oct 15; 145(8): 2051-2060.
  1. 18.   Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer
  2. Ma, Lichun; Hernandez,Maria; Zhao,Yongmei; Mehta,Monika; Tran,Bao; Kelly,Michael; Rae,Zachary; Hernandez, Jonathan M; Davis, Jeremy L; Martin, Sean P; Kleiner, David E; Hewitt, Stephen M; Ylaya, Kris; Wood, Bradford J; Greten, Tim F; Wang, Xin Wei
  3. Cancer cell. 2019, Oct 14; 36(4): 418-430.
  1. 19.   Heterogeneity in refractory acute myeloid leukemia
  2. Horibata, Sachi; Gui, Gege; Lack,Justin; DeStefano, Christin B; Gottesman, Michael M; Hourigan, Christopher S
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, MAY 21; 116(21): 10494-10503.
  1. 20.   Single cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma
  2. Zheng, Hongping; Pomyen, Yotsawat; Hernandez, Maria Olga; Li, Caiyi; Livak, Ferenc; Tang, Wei; Dang, Hien; Greten, Tim F; Davis, Jeremy; Zhao, Yongmei; Mehta, Monika; Levin, Yelena; Shetty, Jyoti; Tran, Bao; Budhu, Anuradha; Wang, Xin Wei
  3. Hepatology. 2018, Jul; 68(1): 127-140.
  1. 21.   Mechanisms that drive inflammatory tumor microenvironment, tumor heterogeneity, and metastatic progression.
  2. Yang, Li; Lin, P Charles
  3. Seminars in cancer biology. 2017, Aug 03; pii: S1044-579X(17)30205-5.
  1. 22.   Regulation of angiogenesis by a non-canonical Wnt-Flt1 pathway in myeloid cells
  2. Stefater, J. A.; Lewkowich, I.; Rao, S.; Mariggi, G.; Carpenter, A. C.; Burr, A. R.; Fan, J. Q.; Ajima, R.; Molkentin, J. D.; Williams, B. O.; Wills-Karp, M.; Pollard, J. W.; Yamaguchi, T.; Ferrara, N.; Gerhardt, H.; Lang, R. A.
  3. Nature. 2011, Jun; 474(7352): 511-U141.
  1. 23.   Approaching Solid Tumor Heterogeneity on a Cellular Basis by Tissue Proteomics Using Laser Capture Microdissection and Biological Mass Spectrometry
  2. Johann, D. J.; Rodriguez-Canales, J.; Mukherjee, S.; Prieto, D. A.; Hanson, J. C.; Emmert-Buck, M.; Blonder, J.
  3. Journal of Proteome Research. 2009 8(5): 2310-2318.
  1. 24.   Continuous wave EPR oximetric imaging at 300 MHz using Radiofrequency power saturation effects
  2. Hama, Y.; Matsumoto, K. I.; Murugesan, R.; Subramanian, S.; Devasahayam, N.; Koscielniak, J. W.; Hyodo, F.; Cook, J. A.; Mitchell, J. B.; Krishna, M. C.
  3. Antioxidants & Redox Signaling. 2007, Oct; 9(10): 1709-1716.
  1. 25.   Involvement of galectin-9 in guinea pig allergic airway inflammation
  2. Yamamoto, H.; Kashio, Y.; Shoji, H.; Shinonaga, R.; Yoshimura, T.; Nishi, N.; Nabe, T.; Nakamura, T.; Kohno, S.; Hirashima, M.
  3. International Archives of Allergy and Immunology. 2007 143: 95-105.
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