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  1. 1.   Conformational Dynamics Allows Sampling of an "Active-like" State by Oncogenic K-Ras-GDP
  2. Grudzien, Patrick; Jang,Hyunbum; Leschinsky, Nicholas; Nussinov,Ruth; Gaponenko, Vadim
  3. Journal of Molecular Biology. 2022, Jun 22; 167695.
  1. 2.   Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach
  2. Smith, Kyle P; Lee, Woonghee; Tonelli, Marco; Lee, Yeongjoon; Light, Samuel H; Cornilescu,Gabriel; Chakravarthy, Srinivas
  3. Protein Science : a Publication of the Protein Society. 2022, Feb 08; 31(5):
  1. 3.   Structural basis for Dicer-like function of an engineered RNase III variant and insights into the reaction trajectory of two-Mg2+-ion catalysis
  2. Dharavath,Sudhaker; Shaw,Gary; Ji,Xinhua
  3. RNA Biology. 2022, Jan; 19(1): 908-915.
  1. 4.   Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED
  2. Zhu, Lan; Bu, Guanhong; Jing, Liang; Shi,Dan; Lee, Ming-Yue; Gonen, Tamir; Liu, Wei; Nannenga, Brent L
  3. Structure (London, England : 1993). 2020, OCT 6; 28(10): 1149-+.
  1. 5.   Reaction Mechanism of Glutamate Carboxypeptidase II Revealed by Mutagenesis, X-ray Crystallography, and Computational Methods
  2. Klusak, V.; Barinka, C.; Plechanovova, A.; Mlcochova, P.; Konvalinka, J.; Rulisek, L.; Lubkowski, J.
  3. Biochemistry. 2009 48(19): 4126-4138.
  1. 6.   Mechanism of the chemical step for the guanosine triphosphate (GTP) hydrolysis catalyzed by elongation factor Tu
  2. Grigorenko, B. L.; Shadrina, M. S.; Topol, I. A.; Collins, J. R.; Nemukhin, A. V.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2008 1784(12): 1908-1917.
  1. 7.   In vitro analysis of the effects of mutations in the G-tract of the human immunodeficiency virus type 1 polypurine tract on RNase H cleavage specificity
  2. Jones, F. D.; Hughes, S. H.
  3. Virology. 2007, Apr; 360(2): 341-349.
  1. 8.   Mechanism of the myosin catalyzed hydrolysis of ATP as rationalized by molecular modeling
  2. Grigorenko, B. L.; Rogov, A. V.; Topol, I. A.; Burt, S. K.; Martinez, H. M.; Nemukhin, A. V.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2007, Apr; 104(17): 7057-7061.
  1. 9.   Mechanisms of guanosine triphosphate hydrolysis by Ras and Ras-GAP proteins as rationalized by ab initio QM/MM simulations
  2. Grigorenko, B. L.; Nemukhin, A. V.; Shadrina, M. S.; Topol, I. A.; Burt, S. K.
  3. Proteins-Structure Function and Bioinformatics. 2007, Feb; 66(2): 456-466.
  1. 10.   Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III
  2. Gan, J. H.; Tropea, J. E.; Austin, B. P.; Court, D. L.; Waugh, D. S.; Ji, X. H.
  3. Cell. 2006, JAN 27; 124(2): 355-366.
  1. 11.   Injectable formulation of disodium 1-[2-(carboxylato)pyrrolidin-1-yl]diazen-1-ium-1,2-diolate (PROLI/NO), an ultrafast nitric oxide donor prodrug
  2. Waterhouse, D. J.; Saavedra, J. E.; Davies, K. M.; Citro, M. L.; Xu, X.; Powell, D. A.; Grimes, G. J.; Potti, G. K.; Keefer, L. K.
  3. Journal of Pharmaceutical Sciences. 2006, JAN; 95(1): 108-115.
  1. 12.   Multifunctional roles of the conserved arg residues in the second region of homology of p97/valosin-containing protein
  2. Wang, Q.; Song, C. C.; Irizarry, L.; Dai, R. M.; Zhang, X. D.; Li, C. C. H.
  3. Journal of Biological Chemistry. 2005, DEC 9; 280(49): 40515-40523.
  1. 13.   Computational study of a transition state analog of phosphoryl transfer in the Ras-RasGAP complex: AlFx versus MgF3
  2. Grigorenko, B. L.; Nemukhin, A. V.; Cachau, R. E.; Topol, I. A.; Burt, S. K.
  3. Journal of Molecular Modeling. 2005, NOV; 11(6): 503-508.
  1. 14.   Measuring fifteen endogenous estrogens simultaneously in human urine by high-performance liquid chromatography-mass spectrometry
  2. Xu, X.; Veenstra, T. D.; Fox, S. D.; Roman, J. M.; Issaq, H. J.; Falk, R.; Saavedra, J. E.; Keefer, L. K.; Ziegler, R. G.
  3. Analytical Chemistry. 2005, OCT 15; 77(20): 6646-6654.
  1. 15.   Investigating HIV-1 polypurine tract geometry via targeted insertion of abasic lesions in the (-)-DNA template and (+)-RNA primer
  2. Yi-Brunozzi, H. Y.; Le Grice, S. F. J.
  3. Journal of Biological Chemistry. 2005, MAY 20; 280(20): 20154-20162.
  1. 16.   Mutational analysis of the DEAD-box RNA helicase eIF4AII characterizes its interaction with transformation suppressor Pdcd4 and eIF4GI
  2. Zakowicz, H.; Yang, H. S.; Stark, C.; Wlodawer, A.; Laronde-Leblanc, N.; Colburn, N. H.
  3. Rna-a Publication of the Rna Society. 2005, MAR; 11(3): 261-274.
  1. 17.   Proteomic analysis of lipid microdomains from lipopolysaccharide-activated human endothelial cells
  2. Karsan, A.; Blonder, J.; Law, J.; Yaquian, E.; Lucas, D. A.; Conrads, T. P.; Veenstra, T.
  3. Journal of Proteome Research. 2005, MAR-APR; 4(2): 349-357.
  1. 18.   Synthesis of trishomocubane amino acid derivatives
  2. Govender, T.; Hariprakasha, H. K.; Kruger, H. G.; Raasch, T.
  3. South African Journal of Chemistry-Suid-Afrikaanse Tydskrif Vir Chemie. 2005 58: 37-40.
  1. 19.   Release factors eRF1 and RF2 - A universal mechanism controls the large conformational changes
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2004, DEC 17; 279(51): 53875-53885.
  1. 20.   Classification of ATP-dependent proteases Lon and comparison of the active sites of their proteolytic domains
  2. Rotanova, T. V.; Melnikov, E. E.; Khalatova, A. G.; Makhovskaya, O. V.; Botos, I.; Wlodawer, A.; Gustchina, A.
  3. European Journal of Biochemistry. 2004, DEC; 271(23-24): 4865-4871.
  1. 21.   Measuring seven endogenous ketolic estrogens simultaneously in human urine by high-performance liquid chromatography-mass spectrometry
  2. Xu, X.; Keefer, L. K.; Waterhouse, D. J.; Saavedra, J. E.; Veenstra, T. D.; Ziegler, R. G.
  3. Analytical Chemistry. 2004, OCT 1; 76(19): 5829-5836.
  1. 22.   Mechanism of the guanosine triphosphate hydrolysis by RAS-GAP proteins as studied by the flexible effective fragment QM/MM technique
  2. Grigorenko, B.; Nemukhin, A.; Topol, I. A.; Cachau, R. E.; Burt, S. K.
  3. Abstracts of Papers of the American Chemical Society. 2004, AUG 22; 228(638-PHYS, Part 2): U295-U295.
  1. 23.   Neamphamide A, a new HIV-Inhibitory depsipeptide from the Papua New Guinea marine sponge Neamphius huxleyi
  2. Oku, N.; Gustafson, K. R.; Cartner, L. K.; Wilson, J. A.; Shigematsu, N.; Hess, S.; Pannell, L. K.; Boyd, M. R.; McMahon, J. B.
  3. Journal of Natural Products. 2004, AUG; 67(8): 1407-1411.
  1. 24.   Facile photochemical synthesis of mixed siloxyacetal glycosides as potential pH-sensitized prodrugs for selective treatment of solid tumors
  2. Svarovsky, S. A.; Taraban, M. B.; Barchi, J. J.
  3. Organic & Biomolecular Chemistry. 2004 2(21): 3155-3161.
  1. 25.   Cyclonellin, a new cyclic octapeptide from the marine sponge Axinella carteri
  2. Milanowski, D. J.; Rashid, M. A.; Gustafson, K. R.; O'Keefe, B. R.; Nawrocki, J. P.; Pannell, L. K.; Boyd, M. R.
  3. Journal of Natural Products. 2004 67(3): 441-444.
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