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  1. 1.   Design of soluble HIV-1 envelope trimers free of covalent gp120-gp41 bonds with prevalent native-like conformation
  2. Zhang, Peng; Gorman, Jason; Tsybovsky,Yaroslav; Lu, Maolin; Liu, Qingbo; Gopan, Vinay; Singh, Mamta; Lin, Yin; Miao, Huiyi; Seo, Yuna; Kwon, Alice; Olia, Adam S; Chuang, Gwo-Yu; Geng, Hui; Lai, Yen-Ting; Zhou, Tongqing; Mascola, John R; Mothes, Walther; Kwong, Peter D; Lusso, Paolo
  3. Cell Reports. 2024, Jul 18; 43(8): 114518.
  1. 2.   Polymorphic residues in HLA-B that mediate HIV control distinctly modulate peptide interactions with both TCR and KIR molecules
  2. Tano-Menka, Rhoda; Singh, Nishant K; Muzhingi, Itai; Li, Xiaolong; Mandanas, Michael V; Kaseke, Clarety; Crain, Charles R; Zhang, Angela; Ogunshola, Funsho J; Vecchiarello, Liza; Piechocka-Trocha, Alicja; Bashirova,Arman; Birnbaum, Michael E; Carrington,Mary; Walker, Bruce D; Gaiha, Gaurav D
  3. Structure (London, England : 1993). 2024, May 07;
  1. 3.   Safety and immunogenicity of Innovax bivalent human papillomavirus vaccine in girls 9-14 years of age: Interim analysis from a phase 3 clinical trial
  2. Zaman, Khalequ; Schuind, Anne E; Adjei, Samuel; Antony, Kalpana; Aponte, John J; Buabeng, Patrick By; Qadri, Firdausi; Kemp,Troy; Hossain, Lokman; Pinto,Ligia; Sukraw, Kristen; Bhat, Niranjan; Agbenyega, Tsiri
  3. Vaccine. 2024, Apr 2; 42(9): 2290-2298.
  1. 4.   Divergent HLA variations and heterogeneous expression but recurrent HLA loss-of- heterozygosity and common HLA-B and TAP transcriptional silencing across advanced pediatric solid cancers
  2. Lim, Wan Ching; Marques Da Costa, Maria Eugenia; Godefroy, Karine; Jacquet, Eric; Gragert, Loren; Rondof, Windy; Marchais, Antonin; Nhiri, Naima; Dalfovo, Davide; Viard,Mathias; Labaied, Nizar; Khan, Asif M; Dessen, Philippe; Romanel, Alessandro; Pasqualini, Claudia; Schleiermacher, Gudrun; Carrington,Mary; Zitvogel, Laurence; Scoazec, Jean-Yves; Geoerger, Birgit; Salmon, Jerome
  3. Frontiers in Immunology. 2024, Jan 22; 14: 1265469.
  1. 5.   HLA-DPA1*02:01~B1*01:01 is a risk haplotype for primary sclerosing cholangitis mediating activation of NKp44+ NK cells
  2. Zecher, Britta F; Ellinghaus, David; Schloer, Sebastian; Niehrs, Annika; Padoan, Benedetta; Baumdick, Martin E; Yuki,Yuko; Martin, Maureen P; Glow, Dawid; Schröder-Schwarz, Jennifer; Niersch, Jennifer; Brias, Sébastien; Müller, Luisa M; Habermann, Robin; Kretschmer, Paul; Früh, Tristan; Dänekas, Janis; Wehmeyer, Malte H; Poch, Tobias; Sebode, Marcial; Ellinghaus, Eva; Degenhardt, Frauke; Körner, Christian; Hoelzemer, Angelique; Fehse, Boris; Oldhafer, Karl J; Schumacher, Udo; Sauter, Guido; Carrington,Mary; Franke, Andre; Bunders, Madeleine J; Christoph, Schramm; Altfeld, Marcus
  3. Gut. 2023, Oct 03;
  1. 6.   HIV-1 neutralizing antibodies elicited in humans by a prefusion-stabilized envelope trimer form a reproducible class targeting fusion peptide
  2. Wang, Shuishu; Matassoli, Flavio; Zhang, Baoshan; Liu, Tracy; Shen, Chen-Hsiang; Bylund, Tatsiana; Johnston, Timothy; Henry, Amy R; Teng, I-Ting; Tripathi, Prabhanshu; Becker, Jordan E; Changela, Anita; Chaudhary, Ridhi; Cheng, Cheng; Gaudinski, Martin; Gorman, Jason; Harris, Darcy R; Lee, Myungjin; Morano, Nicholas C; Novik, Laura; O'Dell, Sijy; Olia, Adam S; Parchment, Danealle K; Rawi, Reda; Roberts-Torres, Jesmine; Stephens,Tyler; Tsybovsky,Yaroslav; Wang, Danyi; Van Wazer, David J; Zhou, Tongqing; Doria-Rose, Nicole A; Koup, Richard A; Shapiro, Lawrence; Douek, Daniel C; McDermott, Adrian B; Kwong, Peter D
  3. Cell Reports. 2023, Jul 10; 42(7): 112755.
  1. 7.   Disruption of the lipolysis pathway results in stem cell death through a sterile immunity-like pathway in adult Drosophila
  2. Aggarwal,Poonam; Liu, Zilun; Cheng, Guang Qian; Singh,Shree Ram; Shi,Chunmei; Chen, Ying; Sun, Ling V; Shi,Chunmei
  3. Cell Reports. 2022, Jun 21; 39(12): 110958.
  1. 8.   Highly Efficient Autologous HIV-1 Isolation by Coculturing Macrophage With Enriched CD4+ T Cells From HIV-1 Patients
  2. Xufré, Cristina; González, Tanía; Leal, Lorna; Trubey, Charles M; Lifson,Jeffrey; Gatell, José María; Alcamí, José; Climent, Núria; García, Felipe; Sánchez-Palomino, Sonsoles
  3. Frontiers in Virology. 2022, Apr; 2
  1. 9.   Chimeric Fusion (F) and Attachment (G) Glycoprotein Antigen Delivery by mRNA as a Candidate Nipah Vaccine
  2. Loomis, Rebecca J.; DiPiazza, Anthony T.; Falcone, Samantha; Ruckwardt, Tracy J.; Morabito, Kaitlyn M.; Abiona, Olubukola M.; Chang, Lauren A.; Caringal, Ria T.; Presnyak, Vladimir; Narayanan, Elisabeth; Tsybovsky,Yaroslav; Nair, Deepika; Hutchinson, Geoffrey B.; Stewart-Jones, Guillaume B. E.; Kueltzo, Lisa A.; Himansu, Sunny; Mascola, John R.; Carfi, Andrea; Graham, Barney S.
  3. Frontiers in Immunology. 2021, Dec 8; 12
  1. 10.   Innate Immunity Modulating Impurities and the Immunotoxicity of Nanobiotechnology-Based Drug Products
  2. Holley,Claire; Dobrovolskaia,Marina
  3. MOLECULES. 2021, Dec; 26(23):
  1. 11.   An In Vitro Assessment of Immunostimulatory Responses to Ten Model Innate Immune Response Modulating Impurities (IIRMIs) and Peptide Drug Product, Teriparatide
  2. Holley,Claire; Cedrone,Edward; Donohue,Duncan; Neun,Barry; Verthelyi, Daniela; Pang, Eric S.; Dobrovolskaia, Marina A.
  3. Molecules. 2021, Dec; 26(24):
  1. 12.   A multiclade env-gag VLP mRNA vaccine elicits tier-2 HIV-1-neutralizing antibodies and reduces the risk of heterologous SHIV infection in macaques
  2. Zhang, Peng; Narayanan, Elisabeth; Liu, Qingbo; Tsybovsky, Yaroslav; Boswell, Kristin; Ding, Shilei; Hu, Zonghui; Follmann, Dean; Lin, Yin; Miao, Huiyi; Schmeisser, Hana; Rogers, Denise; Falcone, Samantha; Elbashir, Sayda M.; Presnyak, Vladimir; Bahl, Kapil; Prabhakaran, Madhu; Chen, Xuejun; Sarfo, Edward K.; Ambrozak, David R.; Gautam, Rajeev; Martin, Malcom A.; Swerczek, Joanna; Herbert, Richard; Weiss, Deborah; Misamore, Johnathan; Ciaramella, Giuseppe; Himansu, Sunny; Stewart-Jones, Guillaume; McDermott, Adrian; Koup, Richard A.; Mascola, John R.; Finzi, Andres; Carfi, Andrea; Fauci, Anthony S.; Lusso, Paolo
  3. Nature Medicine. 2021, Dec;
  1. 13.   Immuno-transcriptomic profiling of extracranial pediatric solid malignancies
  2. Brohl, Andrew S; Sindiri, Sivasish; Wei, Jun S; Milewski, David; Chou, Hsien-Chao; Song, Young K; Wen, Xinyu; Kumar, Jeetendra; Reardon, Hue V; Mudunuri,Uma; Collins,Jack; Nagaraj, Sushma; Gangalapudi, Vineela; Tyagi, Manoj; Zhu, Yuelin J; Masih, Katherine E; Yohe, Marielle E; Shern, Jack F; Qi, Yue; Guha, Udayan; Catchpoole, Daniel; Orentas, Rimas J; Kuznetsov, Igor B; Llosa, Nicolas J; Ligon, John A; Turpin, Brian K; Leino, Daniel G; Iwata, Shintaro; Andrulis, Irene L; Wunder, Jay S; Toledo, Silvia R C; Meltzer, Paul S; Lau, Ching; Teicher, Beverly A; Magnan, Heather; Ladanyi, Marc; Khan, Javed
  3. Cell reports. 2021, Nov 23; 37(8): 110047.
  1. 14.   Engineering well-expressed, V2-immunofocusing HIV-1 envelope glycoprotein membrane trimers for use in heterologous prime-boost vaccine regimens
  2. Crooks, Emma T.; Almanza, Francisco; D'Addabbo, Alessio; Duggan, Erika; Zhang, Jinsong; Wagh, Kshitij; Mou, Huihui; Allen, Joel D.; Thomas, Alyssa; Osawa, Keiko; Korber, Bette T.; Tsybovsky,Yaroslav; Cale, Evan; Nolan, John; Crispin, Max; Verkoczy, Laurent K.; Binley, James M.
  3. PLoS Pathogens. 2021, Oct; 17(10):
  1. 15.   Modifications in an Emergency: The Role of N1-Methylpseudouridine in COVID-19 Vaccines
  2. Nance,Kellie; Meier,Jordan
  3. ACS central science. 2021, May 26; 7(5): 748-756.
  1. 16.   HLA Alleles B*53:01 and C*06:02 Are Associated With Higher Risk of P. falciparum Parasitemia in a Cohort in Uganda
  2. Digitale, Jean C.; Callaway, Perri C.; Martin,Pat; Nelson,George; Viard,Mathias; Rek, John; Arinaitwe, Emmanuel; Dorsey, Grant; Kamya, Moses; Carrington,Mary; Rodriguez-Barraquer, Isabel; Feeney, Margaret E.
  3. Frontiers In Immunology. 2021, Mar 19; 12
  1. 17.   Adjuvanted HIV-1 vaccine promotes antibody-dependent phagocytic responses and protects against heterologous SHIV challenge
  2. Om, Kier; Paquin-Proulx, Dominic; Montero, Maria; Peachman, Kristina; Shen, Xiaoying; Wieczorek, Lindsay; Beck, Zoltan; Weiner, Joshua A.; Kim, Dohoon; Li, Yifan; Mdluli, Thembi; Shubin, Zhanna; Bryant, Christopher; Sharma, Vishakha; Tokarev, Andrey; Dawson, Peter; White, Yohann; Appelbe, Oliver; Klatt, Nichole R.; Tovanabutra, Sodsai; Estes, Jacob D.; Matyas, Gary R.; Ferrari, Guido; Alving, Carl R.; Tomaras, Georgia D.; Ackerman, Margaret E.; Michael, Nelson L.; Robb, Merlin L.; Polonis, Victoria; Rolland, Morgane; Eller, Michael A.; Rao, Mangala; Bolton, Diane L.
  3. PLOS PATHOGENS. 2020, SEP; 16(9): pii: e1008764.
  1. 18.   Evaluation of serological assays to monitor antibody responses to single-dose HPV vaccines
  2. Tsang, Sabrina H; Basu, Partha; Bender, Noemi; Herrero, Rolando; Kemp,Troy; Kreimer, Aimée R; Müller, Martin; Panicker, Gitika; Pawlita, Michael; Pinto,Ligia; Sampson, Joshua N; Sankaranarayanan, Rengaswamy; Schussler, John; Sehr, Peter; Sierra, Monica S; Unger, Elizabeth R; Waterboer, Tim; Hildesheim, Allan
  3. Vaccine. 2020, AUG 27; 38(38): pii: S0264-410X(20)30917-8.
  1. 19.   Immune Monitoring Reveals Fusion Peptide Priming to Imprint Cross-Clade HIV-Neutralizing Responses with a Characteristic Early B Cell Signature
  2. Cheng, Cheng; Duan, Hongying; Xu, Kai; Chuang, Gwo-Yu; Corrigan, Angela R; Geng, Hui; O'Dell, Sijy; Ou, Li; Chambers, Michael; Changela, Anita; Chen, Xuejun; Foulds, Kathryn E; Sarfo, Edward K; Jafari, Alexander J; Hill, Kurt R; Kong, Rui; Liu, Kevin; Todd, John P; Tsybovsky,Yaroslav; Verardi, Raffaello; Wang, Shuishu; Wang, Yiran; Wu, Winston; Zhou, Tongqing; Arnold, Frank J; Doria-Rose, Nicole A; Koup, Richard A; McDermott, Adrian B; Scorpio, Diana G; Worobey, Michael; Shapiro, Lawrence; Mascola, John R; Kwong, Peter D
  3. Cell reports. 2020, Aug 04; 32(5): 107981.
  1. 20.   Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
  2. Ueda, George; Antanasijevic, Aleksandar; Fallas, Jorge A; Sheffler, William; Copps, Jeffrey; Ellis, Daniel; Hutchinson, Geoffrey B; Moyer, Adam; Yasmeen, Anila; Tsybovsky,Yaroslav; Park, Young-Jun; Bick, Matthew J; Sankaran, Banumathi; Gillespie, Rebecca A; Brouwer, Philip Jm; Zwart, Peter H; Veesler, David; Kanekiyo, Masaru; Graham, Barney S; Sanders, Rogier W; Moore, John P; Klasse, Per Johan; Ward, Andrew B; King, Neil P; Baker, David
  3. eLife. 2020, Aug 04; 9: pii: 9:e57659.
  1. 21.   Integrative molecular characterization of gallbladder cancer reveals microenvironment-associated subtypes
  2. Nepal, Chirag; Zhu, Bin; O'Rourke, Colm J; Bhatt, Deepak Kumar; Lee, Donghyuk; Song, Lei; Wang, Difei; Van Dyke, Alison; Choo-Wosoba, Hyoyoung; Liu, Zhiwei; Hildesheim, Allan; Goldstein, Alisa M; Dean, Michael; LaFuente-Barquero, Juan; Lawrence,Scott; Mutreja,Karun; Olanich,Mary; Bermejo, Justo Lorenzo; Ferreccio, Catterina; Roa, Juan Carlos; Rashid, Asif; Hsing, Ann W; Gao, Yu-Tang; Chanock, Stephen J; Araya, Juan Carlos; Andersen, Jesper B; Koshiol, Jill
  3. Journal of hepatology. 2020, May; 74(5): 1132-1144.
  1. 22.   Immune Response Following Quadrivalent Human Papillomavirus Vaccination in Women After Hematopoietic Allogeneic Stem Cell Transplant: A Nonrandomized Clinical Trial
  2. Stratton, Pamela; Battiwalla, Minoo; Tian, Xin; Abdelazim, Suzanne; Baird, Kristin; Barrett, A John; Cantilena, Caroline R; Childs, Richard W; DeJesus, Jessica; Fitzhugh, Courtney; Fowler, Daniel; Gea-Banacloche, Juan; Gress, Ronald E; Hickstein, Dennis; Hsieh, Matthew; Ito, Sawa; Kemp,Troy; Khachikyan, Izabella; Merideth, Melissa A; Pavletic, Steven Z; Quint, Wim; Schiffman, Mark; Scrivani, Claire; Shanis, Dana; Shenoy, Aarthi G; Struijk, Linda; Tisdale, John F; Wagner,Sarah; Williams, Kirsten M; Yu, Quan; Wood, Lauren V; Pinto, Ligia A
  3. JAMA oncology. 2020, MAY; 6(5): 696-705.
  1. 23.   Prolonged evolution of the memory B cell response induced by a replicating adenovirus-influenza H5 vaccine
  2. Matsuda, Kenta; Huang, Jinghe; Zhou, Tongqing; Sheng, Zizhang; Kang, Byong H.; Ishida, Elise; Griesman, Trevor; Stuccio, Sarah; Bolkhovitinov, Lyuba; Wohlbold, Teddy J.; Chromikova, Veronika; Cagigi, Alberto; Leung, Kwanyee; Andrews, Sarah; Cheung, Crystal S. F.; Pullano, Alyssa A.; Plyler, Jason; Soto, Cinque; Zhang, Baoshan; Yang, Yongping; Joyce, M. Gordon; Tsybovsky,Yaroslav; Wheatley, Adam; Narpala, Sandeep R.; Guo, Yicheng; Darko, Sam; Bailer, Robert T.; Poole, April; Liang, C. Jason; Smith, Jon; Alexander, Jeff; Gurwith, Marc; Migueles, Stephen A.; Koup, Richard A.; Golding, Hana; Khurana, Surender; McDermott, Adrian B.; Shapiro, Lawrence; Krammer, Florian; Kwong, Peter D.; Connors, Mark
  3. SCIENCE IMMUNOLOGY. 2019, Apr 19; 4(34):
  1. 24.   In Silico Methods in Antibody Design
  2. Zhao, Jun; Nussinov, Ruth; Wu, Wen-Jin; Ma, Buyong
  3. ANTIBODIES. 2018, Sep; 7(3):
  1. 25.   Immunogenicity of HPV prophylactic vaccines: Serology assays and their use in HPV vaccine evaluation and development
  2. Pinto, Ligia; Dillner, Joakim; Beddows, Simon; Unger, Elizabeth R
  3. Vaccine. 2018, Aug 06; 36(32 Pt. A): 4792-4799.
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