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  1. 1.   The human oral microbiome and risk of colorectal cancer within three prospective cohort studies in the United States
  2. Vogtmann, Emily; Yano, Yukiko; Zouiouich, Semi; Hua,Xing; Wan, Yunhu; Purandare, Vaishnavi; Li, Shilan; Dagnall,Casey; Jones, Kristine; Hicks,Belynda; Hutchinson,Amy; Caporaso, J Gregory; Wheeler, William; Huang, Wen-Yi; Freedman, Neal D; Sandler, Dale P; Beane Freeman, Laura E; Liao, Linda M; Gail, Mitchell H; Shi, Jianxin; Abnet, Christian C; Sinha, Rashmi
  3. Cancer. 2025, Mar 15; 131(6): e35802.
  1. 2.   Effects of high-fiber, high-fruit and high-vegetable, low-fat dietary intervention on the rectal tissue microbiome
  2. Byrd, Doratha A; Gomez, Maria; Hogue, Stephanie; Wan, Yunhu; Ortega-Villa, Ana; Warner,Andrew; Dagnall,Casey; Jones,Kristine; Hicks,Belynda; Albert, Paul; Murphy, Gwen; Sinha, Rashmi; Vogtmann, Emily
  3. Journal of the National Cancer Institute. 2025, Feb 18;
  1. 3.   Nano-mupirocin as tumor-targeted antibiotic: Physicochemical, immunotoxicological and pharmacokinetic characterization, and effect on gut microbiome
  2. Cern, Ahuva; Skoczen,Sarah; Snapp, Kelsie S; Hod, Atara; Zilbersheid, Daniel; Bavli, Yaelle; Alon-Maimon, Tamar; Bachrach, Gilad; Wei, Xiaohui; Berman, Bella; Yassour, Moran; Cedrone,Edward; Neun,Barry; Dobrovolskaia,Marina; Clogston,Jeffrey; Stern,Steve; Barenholz, Yechezkel
  3. Journal of Controlled Release : official journal of the Controlled Release Society. 2024, Aug 2; 373: 713-726.
  1. 4.   Associations of Circulating Estrogens and Estrogen Metabolites with Fecal and Oral Microbiome in Postmenopausal Women in the Ghana Breast Health Study
  2. Wu, Zeni; Pfeiffer, Ruth M; Byrd, Doratha A; Wan, Yunhu; Ansong, Daniel; Clegg-Lamptey, Joe-Nat; Wiafe-Addai, Beatrice; Edusei, Lawrence; Adjei, Ernest; Titiloye, Nicholas; Dedey, Florence; Aitpillah, Francis; Oppong, Joseph; Vanderpuye, Verna; Osei-Bonsu, Ernest; Dagnall, Casey L; Jones,Kristine; Hutchinson,Amy; Hicks, Belynda D; Ahearn, Thomas U; Knight, Rob; Biritwum, Richard; Yarney, Joel; Wiafe, Seth; Awuah, Baffour; Nyarko, Kofi; Garcia-Closas, Montserrat; Sinha, Rashmi; Figueroa, Jonine D; Brinton, Louise A; Trabert, Britton; Vogtmann, Emily
  3. Microbiology Spectrum. 2023, Jun 21; e0157223.
  1. 5.   Experimental bacterial dysbiosis with consequent immune alterations increase intrarectal SIV acquisition susceptibility
  2. Ortiz, Alexandra M; Baker, Phillip J; Langner, Charlotte A; Simpson, Jennifer; Stacy, Apollo; Flynn, Jacob K; Starke, Carly E; Vinton, Carol L; Fennessey,Christine; Belkaid, Yasmine; Keele,Brandon; Brenchley, Jason M
  3. Cell Reports. 2023, Jan 31; 42(1): 112020.
  1. 6.   Oral microbiome and risk of incident head and neck cancer: A nested case-control study
  2. Wu, Zeni; Han, Yongli; Wan, Yunhu; Hua, Xing; Chill, Samantha S; Teshome, Kedest; Zhou, Weiyin; Liu, Jia; Wu, Dongjing; Hutchinson,Amy; Jones,Kristine; Dagnall,Casey; Hicks,Belynda; Liao, Linda; Hallen-Adams, Heather; Shi, Jianxin; Abnet, Christian C; Sinha, Rashmi; Chaturvedi, Anil; Vogtmann, Emily
  3. Oral Oncology. 2023, Jan 05; 137: 106305.
  1. 7.   The effect of modulation of gut microbiome profile on radiation-induced carcinogenesis and survival
  2. Cook, John A; Sowers, Anastasia L; Choudhuri, Rajani; Gadisetti, Chandramouli; Edmondson,Elijah; Gohain, Sangeeta; Krishna, Murali C; Mitchell, James B
  3. Journal of Radiation Research. 2022, Oct 17;
  1. 8.   Oral Shedding of an Oncogenic Virus Alters the Oral Microbiome in HIV+ Patients
  2. Dai, Lu; Lu, Yong-Chen; Chen, Jungang; Plaisance-Bonstaff, Karlie; Mu, Shengyu; Forrest, J Craig; Whitby,Denise; Post, Steven R; Qin, Zhiqiang
  3. Frontiers in Microbiology. 2022, Apr 19; 13: 882520.
  1. 9.   Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts
  2. Wu, Zeni; Hullings, Autumn G; Ghanbari, Reza; Etemadi, Arash; Wan,Yunhu; Zhu,Bin; Poustchi, Hossein; Fahraji, Behnam Bagheri; Sakhvidi, Mohammad Javad Zare; Shi, Jianxin; Knight, Rob; Malekzadeh, Reza; Sinha, Rashmi; Vogtmann, Emily
  3. BMC microbiology. 2021, Nov 22; 21(1): 324.
  1. 10.   Mitigation of endemic GI-tract pathogen-mediated inflammation through development of multimodal treatment regimen and its impact on SIV acquisition in rhesus macaques
  2. Bochart, Rachele M.; Busman-Sahay, Kathleen; Bondoc, Stephen; Morrow, David W.; Ortiz, Alexandra M.; Fennessey,Christine; Fischer, Miranda B.; Shiel, Oriene; Swanson, Tonya; Shriver-Munsch, Christine M.; Crank, Hugh B.; Armantrout, Kimberly M.; Barber-Axthelm, Aaron M.; Langner, Charlotte; Moats, Cassandra R.; Labriola, Caralyn S.; MacAllister, Rhonda; Axthelm, Michael K.; Brenchley, Jason M.; Keele,Brandon; Estes, Jacob D.; Hansen, Scott G.; Smedley, Jeremy V.
  3. PLoS pathogens. 2021, May 10; 17(5):
  1. 11.   Oral-Gut Microbiome Axis in Gastrointestinal Disease and Cancer
  2. Park, Se-Young; Hwang, Byeong-Oh; Lim, Mihwa; Ok, Seung-Ho; Lee, Sun-Kyoung; Chun, Kyung-Soo; Park, Kwang-Kyun; Hu,Yinling; Chung, Won-Yoon; Song, Na-Young
  3. Cancers. 2021, May; 13(9):
  1. 12.   Power of Microbiome Beta-Diversity Analyses Based on Standard Reference Samples
  2. Gail, Mitchell H; Wan,Yunhu; Shi, Jianxin
  3. American journal of epidemiology. 2021, Mar; 190(3): 439-447.
  1. 13.   A prime/boost vaccine regimen alters the rectal microbiome and impacts immune responses and viremia control post-SIV infection in male and female rhesus macaques
  2. Musich, Thomas; Thovarai, Vishal; Venzon, David J; Mohanram, Venkatramanan; Tuero, Iskra; Miller-Novak, Leia K; Helmold Hait, Sabrina; Rahman, Mohammad Arif; Hunegnaw, Ruth; Huiting, Erin; Yuan, Wuxing; O'hUigin, Colm; Hoang, Tanya; Sui, Yongjun; Labranche, Celia; Montefiori, David; Bear,Jenifer; Rosati,Margherita; Bissa, Massimiliano; Berzofsky, Jay A; Pavlakis,George; Felber,Barbara; Franchini, Genoveffa; Robert-Guroff, Marjorie
  3. Journal of virology. 2020, DEC; 94(24): pii: JVI.01225-20.
  1. 14.   Impact of Acute HIV Infection and Early Antiretroviral Therapy on the Human Gut Microbiome
  2. Sortino,Ornella; Phanuphak, Nittaya; Schuetz, Alexandra; Ortiz, Alexandra M; Chomchey, Nitiya; Belkaid, Yasmine; Davis, Jacquice; Mystakelis, Harry A; Quiñones, Mariam; Deleage,Claire; Ingram, Brian; Rerknimitr, Rungsun; Pinyakorn, Suteeraporn; Rupert,Adam; Robb, Merlin L; Ananworanich, Jintanat; Brenchley, Jason; Sereti, Irini
  3. Open Forum Infectious Diseases. 2020, Dec; 7(12): pii: ofz367.
  1. 15.   Therapeutic responses to Roseomonas mucosa in atopic dermatitis may involve lipid-mediated TNF-related epithelial repair
  2. Myles, Ian A; Castillo, Carlo R; Barbian, Kent D; Kanakabandi, Kishore; Virtaneva, Kimmo; Fitzmeyer, Emily; Paneru, Monica; Otaizo-Carrasquero, Francisco; Myers, Timothy G; Markowitz,Tovah; Moore, Ian N; Liu, Xue; Ferrer, Marc; Sakamachi, Yosuke; Garantziotis, Stavros; Swamydas, Muthulekha; Lionakis, Michail S; Anderson, Erik D; Earland, Noah J; Ganesan, Sundar; Sun, Ashleigh A; Bergerson, Jenna R E; Silverman, Robert A; Petersen, Maureen; Martens, Craig A; Datta, Sandip K
  3. Science translational medicine. 2020, Sep 09; 12(560): pii: eaaz8631.
  1. 16.   The Gut Microbiome and Xenobiotics: Identifying Knowledge Gaps
  2. Sutherland, Vicki L; McQueen, Charlene A; Mendrick, Donna; Gulezian, Donna; Cerniglia, Carl; Foley, Steven; Forry, Sam; Khare, Sangeeta; Liang, Xue; Manautou, Jose E; Tweedie, Donald; Young,Howard; Alekseyenko, Alexander V; Burns, Frank; Dietert, Rod; Wilson, Alan; Chen, Connie
  3. Toxicological sciences : an official journal of the Society of Toxicology. 2020, Jul 01; 176(1): 1-10.
  1. 17.   HIV-associated gut dysbiosis is independent of sexual practice and correlates with noncommunicable diseases
  2. Vujkovic-Cvijin, I; Sortino,Ornella; Verheij, E; Sklar, J; Wit, F W; Kootstra, N A; Sellers, B; Brenchley, J M; Ananworanich, J; Loeff, M Schim van der; Belkaid, Y; Reiss, P; Sereti, I
  3. Nature communications. 2020, May 15; 11(1): 2448.
  1. 18.   Comparison of Oral Microbiota Collected Using Multiple Methods and Recommendations for New Epidemiologic Studies
  2. Yano, Yukiko; Hua, Xing; Wan, Yunhu; Suman, Shalabh; Zhu,Bin; Dagnall,Casey; Hutchinson,Amy; Jones,Kristine; Hicks,Belynda; Shi, Jianxin; Abnet, Christian C; Vogtmann, Emily
  3. mSystems. 2020, JUL-AUG; 5(4): e00156-20.
  1. 19.   Laboratory mice born to wild mice have natural microbiota and model human immune responses
  2. Rosshart, Stephan P.; Herz, Jasmin; Vassallo, Brian G.; Hunter, Ashli; Wall, Morgan K.; Badger, Jonathan H.; McCulloch, John A.; Anastasakis, Dimitrios G.; Sarshad, Aishe A.; Leonardi, Irina; Collins, Nicholas; Blatter, Joshua A.; Han, Seong-Ji; Tamoutounour, Samira; Potapova, Svetlana; St Claire, Mark B. Foster; Yuan,Wuxing; Sen,Shurjo; Dreier, Matthew S.; Hild, Benedikt; Hafner, Markus; Wang, David; Iliev, Iliyan D.; Belkaid, Yasmine; Trinchieri, Giorgio; Rehermann, Barbara
  3. SCIENCE. 2019, AUG 2; 365(6452): 461-+.
  1. 20.   Bacterial Translocation and Risk of Liver Cancer in a Finnish Cohort
  2. Yang, Baiyu; Petrick, Jessica L.; Thistle, Jake E.; Pinto,Ligia; Kemp,Troy; Gewirtz, Andrew T.; Waterboer, Tim; Fedirko, Veronika; Jenab, Mazda; Graubard, Barry I.; Weinstein, Stephanie J.; Albanes, Demetrius; McGlynn, Katherine A.
  3. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION. 2019, Apr; 28(4): 807-813.
  1. 21.   Correlation between Disease Severity and the Intestinal Microbiome in Mycobacterium tuberculosis-Infected Rhesus Macaques
  2. Namasivayam, Sivaranjani; Kauffman, Keith D; McCulloch, John A; Yuan, Wuxing; Thovarai, Vishal; Mittereder, Lara R; Trinchieri,Giorgio; Barber, Daniel L; Sher, Alan
  3. mBio. 2019, May-Jun; 10(3): pii: e01018-19..
  1. 22.   Altered fecal microbiota composition in all male aggressor-exposed rodent model simulating features of post-traumatic stress disorder
  2. Gautam, Aarti; Kumar, Raina; Chakraborty, Nabarun; Muhie, Seid; Hoke, Allison; Hammamieh, Rasha; Jett, Marti
  3. Journal of neuroscience research. 2018, Apr 06;
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