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  1. 1.   Identification of neoepitope reactive T-cell receptors guided by HLA-A*03:01 and HLA-A*11:01 immunopeptidomics
  2. Ade, Catherine M; Sporn, Matthew J; Das,Sudipto; Yu, Zhiya; Hanada, Ken-Ichi; Qi, Yue A; Maity, Tapan; Zhang, Xu; Guha, Udayan; Andresson,Thorkell; Yang, James C
  3. Journal for Immunotherapy of Cancer. 2023, Sep; 11(9):
  1. 2.   Evaluating Demographic Representation in Clinical Trials: Use of the Adaptive Coronavirus Disease 2019 Treatment Trial (ACTT) as a Test Case
  2. Ortega-Villa, Ana M; Hynes, Noreen A; Levine, Corri B; Yang, Katherine; Wiley, Zanthia; Jilg, Nikolaus; Wang,Jing; Whitaker, Jennifer A; Colombo, Christopher J; Nayak, Seema U; Kim, Hannah Jang; Iovine, Nicole M; Ince, Dilek; Cohen, Stuart H; Langer, Adam J; Wortham, Jonathan M; Atmar, Robert L; El Sahly, Hana M; Jain, Mamta K; Mehta, Aneesh K; Wolfe, Cameron R; Gomez, Carlos A; Beresnev, Tatiana; Mularski, Richard A; Paules, Catharine I; Kalil, Andre C; Branche, Angela R; Luetkemeyer, Annie; Zingman, Barry S; Voell, Jocelyn; Whitaker, Michael; Harkins, Michelle S; Davey, Richard T; Grossberg, Robert; George, Sarah L; Tapson, Victor; Short, William R; Ghazaryan, Varduhi; Benson, Constance A; Dodd, Lori E; Sweeney, Daniel A; Tomashek, Kay M
  3. Open Forum Infectious Diseases. 2023, Jun; 10(6): ofad290.
  1. 3.   Different Clinical Presentations of Human Rhinovirus Species Infection in Children and Adults in Mexico
  2. Galindo-Fraga, Arturo; Guerra-de-Blas, Paola Del Carmen; Ortega-Villa, Ana M; Mateja,Allyson; Ruiz Quiñones, Jesus Arturo; Ramos Cervantes, Pilar; Ledesma Barrientos, Fernando; Ortiz-Hernández, Ana A; Llamosas-Gallardo, Beatriz; Ramírez-Venegas, Alejandra; Valdéz Vázquez, Rafael; Noyola Chepitel, Daniel; Moreno-Espinosa, Sarbelio; Powers,John; Guerrero, M Lourdes; Ruiz-Palacios, Guillermo M; Beigel, John H
  3. Open Forum Infectious Diseases. 2022, Jul; 9(7): ofac303.
  1. 4.   Genome-wide Screens Identify Lineage- and Tumor-Specific Genes Modulating MHC-I- and MHC-II-Restricted Immunosurveillance of Human Lymphomas
  2. Dersh, Devin; Phelan, James D; Gumina, Megan E; Wang, Boya; Arbuckle, Jesse H; Holly, Jaroslav; Kishton, Rigel J; Markowitz,Tovah; Seedhom, Mina O; Fridlyand, Nathan; Wright, George W; Huang, Da Wei; Ceribelli, Michele; Thomas, Craig J; Lack,Justin; Restifo, Nicholas P; Kristie, Thomas M; Staudt, Louis M; Yewdell, Jonathan W
  3. Immunity. 2021, Jan 12; 54(1): 116-131.e10.
  1. 5.   dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
  2. Ou, Jianhong; Liu, Haibo; Nirala, Niraj K.; Stukalov, Alexey; Acharya,Usha; Green, Michael R.; Zhu, Lihua Julie
  3. PLOS ONE. 2020, NOV 6; 15(11):
  1. 6.   HLA heterozygote advantage against HIV-1 is driven by quantitative and qualitative differences in HLA allele-specific peptide presentation
  2. Arora, Jatin; Pierini, Federica; McLaren, Paul J; Carrington,Mary; Fellay, Jacques; Lenz, Tobias L
  3. Molecular biology and evolution. 2020, MAR; 37(3): 639-650.
  1. 7.   deepDR: A network-based deep learning approach to in silico drug repositioning
  2. Zeng, Xiangxiang; Zhu, Siyi; Liu, Xiangrong; Zhou, Yadi; Nussinov,Ruth; Cheng, Feixiong
  3. Bioinformatics (Oxford, England). 2019, DEC 15; 35(24): 5191-5198.
  1. 8.   HIV peptidome-wide association study reveals patient-specific epitope repertoires associated with HIV control
  2. Arora, Jatin; McLaren, Paul J; Chaturvedi, Nimisha; Carrington, Mary; Fellay, Jacques; Lenz, Tobias L
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, Jan 15; 116(3): 944-949.
  1. 9.   Configuration-dependent Presentation of Multivalent IL-15:IL-15Ralpha Enhances the Antigen-specific T Cell Response and Anti-tumor Immunity
  2. Hong, E.; Usiskin, I. M.; Bergamaschi, C.; Hanlon, D. J.; Edelson, R. L.; Justesen, S.; Pavlakis, G. N.; Flavell, R. A.; Fahmy, T. M.
  3. The Journal of biological chemistry. 2016, 22-Apr; 291(17): 8931-50.
  1. 10.   Hydrodynamic Delivery of Human IL-15 cDNA Increases Murine Natural Killer Cell Recovery after Syngeneic Bone Marrow Transplantation
  2. Barao, I.; Alvarez, M.; Redelman, D.; Weiss, J. M.; Ortaldo, J. R.; Wiltrout, R. H.; Murphy, W. J.
  3. Biology of Blood and Marrow Transplantation. 2011, Dec; 17(12): 1754-1764.
  1. 11.   Epigenetic regulation of CIITA expression in human T-cells
  2. van Eggermond, M.; Boom, D. R.; Klous, P.; Schooten, E.; Marquez, V. E.; Wierda, R. J.; Holling, T. M.; van den Eisen, P. J.
  3. Biochemical Pharmacology. 2011, Nov; 82(10): 1430-1437.
  1. 12.   Plasmacytoid dendritic cells: one-trick ponies or workhorses of the immune system?
  2. Reizis, B.; Colonna, M.; Trinchieri, G.; Barrat, F.; Gilliet, M.
  3. Nature Reviews Immunology. 2011, Aug; 11(8): 558-U82.
  1. 13.   Gp96(SIV)Ig immunization induces potent polyepitope specific, multifunctional memory responses in rectal and vaginal mucosa
  2. Strbo, N.; Vaccari, M.; Pahwa, S.; Kolber, M. A.; Fisher, E.; Gonzalez, L.; Doster, M. N.; Hryniewicz, A.; Felber, B. K.; Pavlakis, G. N.; Franchini, G.; Podack, E. R.
  3. Vaccine. 2011, Mar; 29(14): 2619-2625.
  1. 14.   Covering Women's Greatest Health Fear: Breast Cancer Information in Consumer Magazines
  2. Walsh-Childers, K.; Edwards, H.; Grobmyer, S.
  3. Health Communication. 2011 26(3): 209-220.
  1. 15.   TCR-Dependent and -Independent Activation Underlie Liver-Specific Regulation of NKT Cells
  2. Subleski, J. J.; Hall, V. L.; Wolfe, T. B.; Scarzello, A. J.; Weiss, J. M.; Chan, T.; Hodge, D. L.; Back, T. C.; Ortaldo, J. R.; Wiltrout, R. H.
  3. Journal of Immunology. 2011, Jan; 186(2): 838-847.
  1. 16.   Coarse-graining RNA nanostructures for molecular dynamics simulations
  2. Paliy, M.; Melnik, R.; Shapiro, B. A.
  3. Physical Biology. 2010, Sep; 7(3): 12.
  1. 17.   FDA guidance on prophylactic DNA vaccines: Analysis and recommendations
  2. Klinman, D. M.; Klaschik, S.; Tross, D.; Shirota, H.; Steinhagen, F.
  3. Vaccine. 2010, Apr; 28(16): 2801-2805.
  1. 18.   Processing and presentation of antigens derived from intracellular protozoan parasites
  2. Goldszmid, R. S.; Sher, A.
  3. Current Opinion in Immunology. 2010, Feb; 22(1): 118-123.
  1. 19.   Assembly and intracellular trafficking of HLA-B*3501 and HLA-B*3503
  2. Thammavongsa, V.; Schaefer, M.; Filzen, T.; Collins, K. L.; Carrington, M.; Bangia, N.; Raghavan, M.
  3. Immunogenetics. 2009, Dec; 61(11-12): 703-716.
  1. 20.   Secretion and Biological Activity of Short Signal Peptide IL-15 Is Chaperoned by IL-15 Receptor Alpha In Vivo
  2. Bergamaschi, C.; Jalah, R.; Kulkarni, V.; Rosati, M.; Zhang, G. M.; Alicea, C.; Zolotukhin, A. S.; Felber, B. K.; Pavlakis, G. N.
  3. Journal of Immunology. 2009 183(5): 3064-3072.
  1. 21.   Aprotease-resistant immunotoxin against CD22 with greatly increased activity against CLL and diminished animal toxicity
  2. Weldon, J. E.; Xiang, L. M.; Chertov, O.; Margulies, I.; Kreitman, R. J.; FitzGerald, D. J.; Pastan, I.
  3. Blood. 2009 113(16): 3792-3800.
  1. 22.   Fusion inhibitor prevents spread of immunodeficiency viruses, but not activation of virus-specific T cells, by dendritic cells
  2. Frank, I.; Stossel, H.; Gettie, A.; Turville, S. G.; Bess, J. W.; Lifson, J. D.; Sivin, I.; Romani, N.; Robbiani, M.
  3. Journal of Virology. 2008 82(11): 5329-5339.
  1. 23.   Modulation of HIV and SIV neutralization sensitivity by DC-SIGN and mannose-binding lectin
  2. Marzi, A.; Mitchell, D. A.; Chaipan, C.; Fisch, T.; Doms, R. W.; Carrington, M.; Desrosiers, R. C.; Pohlmann, S.
  3. Virology. 2007, Nov; 368(2): 322-330.
  1. 24.   Pol-specific CD8(+) T cells recognize simian immunodeficiency virus-infected cells prior to nef-mediated major histocompatibility complex class I Downregulation
  2. Sacha, J. B.; Chung, C.; Reed, J.; Jonas, A. K.; Bean, A. T.; Spencer, S. P.; Lee, W.; Vojnov, L.; Rudersdorfl, R.; Friedrich, T. C.; Wilson, N. A.; Lifson, J. D.; Watkins, D. I.
  3. Journal of Virology. 2007, Nov; 81(21): 11703-11712.
  1. 25.   TAP-1 indirectly regulates CD4(+) T cell priming in Toxoplasma gondii infection by controlling NK cell IFN-gamma production
  2. Goldszmid, R. S.; Bafica, A.; Jankovic, D.; Feng, C. G.; Caspar, P.; Winkler-Pickett, R.; Trinchieri, G.; Sher, A.
  3. Journal of Experimental Medicine. 2007, Oct; 204(11): 2591-2602.
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