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  1. 1.   Autoinhibition of ubiquitin-specific protease 8: insights into domain interactions and mechanisms of regulation
  2. Caba, Cody; Black, Megan; Liu, Yujue; DaDalt, Ashley A; Mallare, Josh; Fan,Lixin; Harding, Rachel J; Wang, Yunxin; Vacratsis, Panayiotis O; Huang, Rui; Zhuang, Zhihao; Tong, Yufeng
  3. The Journal of Biological Chemistry. 2024, Aug 28; 107727.
  1. 2.   Human Immunodeficiency Virus Type 1 Gag Polyprotein Modulates Membrane Physical Properties like a Surfactant: Potential Implications for Virus Assembly
  2. Denieva, Zaret G; Kuzmin, Peter I; Galimzyanov, Timur R; Datta,Siddhartha; Rein,Alan; Batishchev, Oleg V
  3. ACS Infectious Diseases. 2024, Jun 25;
  1. 3.   Systematic characterization of multi-omics landscape between gut microbial metabolites and GPCRome in Alzheimer's disease
  2. Qiu, Yunguang; Hou, Yuan; Gohel, Dhruv; Zhou, Yadi; Xu, Jielin; Bykova, Marina; Yang, Yuxin; Leverenz, James B; Pieper, Andrew A; Nussinov,Ruth; Caldwell, Jessica Z K; Brown, J Mark; Cheng, Feixiong
  3. Cell Reports. 2024, Apr 21; 43(5): 114128.
  1. 4.   Delineation of functional subdomains of Huntingtin protein and their interaction with HAP40
  2. Alteen, Matthew G; Deme,Justin; Alvarez, Claudia P; Loppnau, Peter; Hutchinson, Ashley; Seitova, Alma; Chandrasekaran, Renu; Silva Ramos, Eduardo; Secker, Christopher; Alqazzaz, Mona; Wanker, Erich E; Lea, Susan M; Arrowsmith, Cheryl H; Harding, Rachel J
  3. Structure (London, England : 1993). 2023, Sep 7; 31
  1. 5.   Cross-linking mass spectrometry for mapping protein complex topologies in situ
  2. Lee,Kitaik; O'Reilly,Francis
  3. Essays in Biochemistry. 2023, Feb 03;
  1. 6.   Thermal Shift Assay for Small GTPase Stability Screening: Evaluation and Suitability
  2. Kopra, Kari; Valtonen, Salla; Mahran, Randa; Kapp, Jonas N; Hassan, Nazia; Gillette,Bill; Dennis, Bryce; Li, Lianbo; Westover, Kenneth D; Plückthun, Andreas; Härmä, Harri
  3. International Journal of Molecular Sciences. 2022, Jun 26; 23(13):
  1. 7.   Orphan G-Protein Coupled Receptor GPRC5B Is Critical for Lymphatic Development
  2. Xu, Wenjing; Nelson-Maney, Nathan P; Bálint, László; Kwon, Hyouk-Bum; Davis, Reema B; Dy, Danielle C M; Dunleavey, James M; St Croix,Brad; Caron, Kathleen M
  3. International Journal of Molecular Sciences. 2022, May 20; 23(10):
  1. 8.   The mechanism of Raf activation through dimerization
  2. Zhang,Mingzhen; Maloney,Ryan; Jang,Hyunbum; Nussinov,Ruth
  3. Chemical Science. 2021, Dec 08; 12(47): 15609-15619.
  1. 9.   The tumor suppressor activity of DLC1 requires the interaction of its START domain with Phosphatidylserine, PLCD1, and Caveolin-1
  2. Sanchez-Solana, Beatriz; Wang, Dunrui; Qian, Xiaolan; Velayoudame, Parthibane; Simanshu,Dhirendra; Acharya,Jairaj; Lowy, Douglas R
  3. Molecular Cancer. 2021, Nov 02; 20(1):
  1. 10.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 11.   Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI
  2. Li,Mi; Srp, Jaroslav; Mares, Michael; Wlodawer,Alexander; Gustchina,Alla
  3. Acta crystallographica. Section D, Structural biology. 2021, Aug 1; 77(Pt 8): 1084-1098.
  1. 12.   The mechanism of full activation of tumor suppressor PTEN at the phosphoinositide-enriched membrane
  2. Jang,Hyunbum; Smith, Iris Nira; Eng, Charis; Nussinov,Ruth
  3. iScience. 2021, May 21; 24(5):
  1. 13.   My personal mutanome: a computational genomic medicine platform for searching network perturbing alleles linking genotype to phenotype
  2. Zhou, Yadi; Zhao, Junfei; Fang, Jiansong; Martin, William; Li, Lang; Nussinov,Ruth; Chan, Timothy A.; Eng, Charis; Cheng, Feixiong
  3. Genome Biology. 2021, Jan 29; 22(1):
  1. 14.   The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms
  2. Beyer, Hannes M; Virtanen, Salla I; Aranko, A Sesilja; Mikula, Kornelia M; Lountos,George; Wlodawer,Alexander; Ollila, O H Samuli; Iwaï, Hideo
  3. International journal of molecular sciences. 2020, Nov 07; 21(21): 8367.
  1. 15.   dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
  2. Ou, Jianhong; Liu, Haibo; Nirala, Niraj K.; Stukalov, Alexey; Acharya,Usha; Green, Michael R.; Zhu, Lihua Julie
  3. PLOS ONE. 2020, NOV 6; 15(11):
  1. 16.   Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
  2. Gillette, Michael A; Satpathy, Shankha; Cao, Song; Dhanasekaran, Saravana M; Vasaikar, Suhas V; Krug, Karsten; Petralia, Francesca; Li, Yize; Liang, Wen-Wei; Reva, Boris; Krek, Azra; Ji, Jiayi; Song, Xiaoyu; Liu, Wenke; Hong, Runyu; Yao, Lijun; Blumenberg, Lili; Savage, Sara R; Wendl, Michael C; Wen, Bo; Li, Kai; Tang, Lauren C; MacMullan, Melanie A; Avanessian, Shayan C; Kane, M Harry; Newton, Chelsea J; Cornwell, MacIntosh; Kothadia, Ramani B; Ma, Weiping; Yoo, Seungyeul; Mannan, Rahul; Vats, Pankaj; Kumar-Sinha, Chandan; Kawaler, Emily A; Omelchenko, Tatiana; Colaprico, Antonio; Geffen, Yifat; Maruvka, Yosef E; da Veiga Leprevost, Felipe; Wiznerowicz, Maciej; Gümüs, Zeynep H; Veluswamy, Rajwanth R; Hostetter, Galen; Heiman, David I; Wyczalkowski, Matthew A; Hiltke, Tara; Mesri, Mehdi; Kinsinger, Christopher R; Boja, Emily S; Omenn, Gilbert S; Chinnaiyan, Arul M; Rodriguez, Henry; Li, Qing Kay; Jewell, Scott D; Thiagarajan,Mathangi; Getz, Gad; Zhang, Bing; Fenyö, David; Ruggles, Kelly V; Cieslik, Marcin P; Robles, Ana I; Clauser, Karl R; Govindan, Ramaswamy; Wang, Pei; Nesvizhskii, Alexey I; Ding, Li; Mani, D R; Carr, Steven A
  3. Cell. 2020, Jul 09; 182(1): 200-225.e35.
  1. 17.   Calcium-induced calcium release and type 3 ryanodine receptors modulate the slow afterhyperpolarising current, sI(AHP), and its potentiation in hippocampal pyramidal neurons
  2. Tedoldi, Angelo; Ludwig, Petra; Fulgenzi,Gianluca; Takeshima, Hiroshi; Pedarzani, Paola; Stocker, Martin
  3. PLOS ONE. 2020, JUN 19; 15(7):
  1. 18.   HMI-PRED: A Web Server for Structural Prediction of Host-Microbe Interactions Based on Interface Mimicry
  2. Guven Maiorov,Emine; Hakouz, Asma; Valjevac, Sukejna; Keskin, Ozlem; Tsai,Chung-Jung; Gursoy, Attila; Nussinov,Ruth
  3. Journal of molecular biology. 2020, MAY 15; 432(11): 3395-3403.
  1. 19.   Chemical Modulation of Pre-mRNA Splicing in Mammalian Systems
  2. Boer, Robert E.; Torrey, Zachary R.; Schneekloth,Jay
  3. ACS CHEMICAL BIOLOGY. 2020, Apr 17; 15(4): 808-818.
  1. 20.   Preclinical Development of a Fusion Peptide Conjugate as an HIV Vaccine Immunogen
  2. Ou, Li; Kong, Wing-Pui; Chuang, Gwo-Yu; Ghosh, Mridul; Gulla, Krishana; O'Dell, Sijy; Varriale, Joseph; Barefoot, Nathan; Changela, Anita; Chao, Cara W; Cheng, Cheng; Druz, Aliaksandr; Kong, Rui; McKee, Krisha; Rawi, Reda; Sarfo, Edward K; Schön, Arne; Shaddeau, Andrew; Tsybovsky,Yaroslav; Verardi, Raffaello; Wang, Shuishu; Wanninger, Timothy G; Xu, Kai; Yang, Gengcheng J; Zhang, Baoshan; Zhang, Yaqiu; Zhou, Tongqing; Arnold, Frank J; Doria-Rose, Nicole A; Lei, Q Paula; Ryan, Edward T; Vann, Willie F; Mascola, John R; Kwong, Peter D
  3. Scientific reports. 2020, Feb 20; 10(1): 3032.
  1. 21.   Regulation of senescence and the SASP by the transcription factor C/EBP beta
  2. Salotti,Jacqueline; Johnson,Peter
  3. Experimental gerontology. 2019, Dec; 128
  1. 22.   Oncoviruses Can Drive Cancer by Rewiring Signaling Pathways Through Interface Mimicry
  2. Guven Maiorov,Emine; Tsai,Chung-Jung; Nussinov,Ruth
  3. Frontiers in oncology. 2019, Nov 15; 9: 1236.
  1. 23.   Nucleic acid-induced dimerization of HIV-1 Gag protein
  2. Zhao, Huaying; Datta,Siddhartha; Kim, Sung H.; To, Samuel C.; Chaturvedi, Sumit K.; Rein,Alan; Schuck, Peter
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2019, Nov 8; 294(45): 16480-16493.
  1. 24.   Cryo-EM structure of a dimeric B-Raf:14-3-3 complex reveals asymmetry in the active sites of B-Raf kinases
  2. Kondo, Yasushi; Ognjenovic,Jana; Banerjee, Saikat; Karandur, Deepti; Merk,Alan; Kulhanek, Kayla; Wong, Kathryn; Roose, Jeroen P.; Subramaniam, Sriram; Kuriyan, John
  3. SCIENCE. 2019, OCT 4; 366(6461): 109-+.
  1. 25.   Threonine Tyrosine Kinase Inhibition Eliminates Lung Cancers by Augmenting Apoptosis and Polyploidy
  2. Zheng, Lin; Chen, Zibo; Kawakami, Masanori; Chen, Yulong; Roszik, Jason; Mustachio, Lisa Maria; Kurie, Jonathan M; Villalobos, Pamela; Lu, Wei; Behren, Carmen; Mino, Barbara; Solis, Luisa M; Silvester, Jennifer; Thu, Kelsie L; Cescon, David W; Rodriguez-Canales, Jaime; Wistuba, Ignacio I; Mak, Tak W; Liu, Xi; Dmitrovsky,Ethan
  3. Molecular cancer therapeutics. 2019, OCT; 18(10): 1775-1786.
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