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Federated learning improves site performance in multicenter deep learning without data sharing

  1. Author:
    Sarma, Karthik
    Harmon,Stephanie
    Sanford, Thomas
    Roth, Holger R.
    Xu, Ziyue
    Tetreault, Jesse
    Xu, Daguang
    Flores, Mona G.
    Raman, Alex G.
    Kulkarni, Rushikesh
    Wood, Bradford J.
    Choyke, Peter L.
    Priester, Alan M.
    Marks, Leonard S.
    Raman, Steven S.
    Enzmann, Dieter
    Turkbey, Baris
    Speier, William
    Arnold, Corey W.
  2. Author Address

    Univ Calif Los Angeles, Dept Radiol Sci, Los Angeles, CA 90024 USA.Univ Calif Los Angeles, Dept Bioengn, Los Angeles, CA 90024 USA.NCI, NIH, Bethesda, MD 20892 USA.Frederick Natl Lab Canc Res, Clin Monitoring Res Program Directorate, Frederick, MD USA.SUNY Upstate Med Ctr, Dept Urol, Syracuse, NY USA.NVIDIA Corp, Bethesda, MD USA.Univ Calif Los Angeles, Dept Urol, Los Angeles, CA 90024 USA.Univ Calif Los Angeles, Dept Pathol & Lab Med, Los Angeles, CA 90024 USA.
    1. Year: 2021
    2. Date: Jun 12
  1. Journal: Journal of the American Medical Informatics Association : JAMIA
  2. OXFORD UNIV PRESS,
    1. 28
    2. 6
    3. Pages: 1259-1264
  3. Type of Article: Article
  4. ISSN: 1067-5027
  1. Abstract:

    Objective: To demonstrate enabling multi-institutional training without centralizing or sharing the underlying physical data via federated learning (FL). Materials and methods: Deep learning models were trained at each participating institution using local clinical data, and an additional model was trained using FL across all of the institutions. Results: We found that the FL model exhibited superior performance and generalizability to the models trained at single institutions, with an overall performance level that was significantly better than that of any of the institutional models alone when evaluated on held-out test sets from each institution and an outside challenge dataset. Discussion: The power of FL was successfully demonstrated across 3 academic institutions while avoiding the privacy risk associated with the transfer and pooling of patient data. Conclusion: Federated learning is an effective methodology that merits further study to enable accelerated development of models across institutions, enabling greater generalizability in clinical use.

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External Sources

  1. DOI: 10.1093/jamia/ocaa341
  2. PMID: 33537772
  3. WOS: 000671031900023

Library Notes

  1. Fiscal Year: FY2020-2021
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