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Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation

  1. Author:
    Martin-Garcia, Jose M.
    Conrad, Chelsie E.
    Nelson, Garrett
    Stander, Natasha
    Zatsepin, Nadia A.
    Zook, James
    Zhu, Lan
    Geiger, James
    Chun, Eugene
    Kissick, David
    Hilgart, Mark C.
    Ogata, Craig
    Ishchenko, Andrii
    Nagaratnam, Nirupa
    Roy-Chowdhury, Shatabdi
    Coe, Jesse
    Subramanian, Ganesh
    Schaffer, Alexander
    James, Daniel
    Ketwala, Gihan
    Venugopalan, Nagarajan
    Xu, Shenglan
    Corcoran, Stephen
    Ferguson, Dale
    Weierstall, Uwe
    Spence, John C. H.
    Cherezov, Vadim
    Fromme, Petra
    Fischetti, Robert F.
    Liu, Wei
  2. Author Address

    Arizona State Univ, Sch Mol Sci, Tempe, AZ 85287 USA.Arizona State Univ, Biodesign Inst, Biodesign Ctr Appl Struct Discovery, Tempe, AZ 85287 USA.NCI, Struct Biophys Lab, Ft Detrick, MD 21702 USA.Arizona State Univ, Dept Phys, POB 871504, Tempe, AZ 85287 USA.Argonne Natl Lab, Adv Photon Source, 9700 South Cass Ave, Lemont, IL 60439 USA.Univ Southern Calif, Dept Chem, Bridge Inst, 3430 South Vermont Ave,MC 3303, Los Angeles, CA 90089 USA.Paul Scherrer Inst, CH-5232 Villigen, Switzerland.
    1. Year: 2017
    2. Date: Jul
  1. Journal: IUCRJ
  2. INT UNION CRYSTALLOGRAPHY,
    1. 4
    2. Part 4
    3. Pages: 439-454
  3. Type of Article: Article
  4. ISSN: 2052-2525
  1. Abstract:

    Crystal structure determination of biological macromolecules using the novel technique of serial femtosecond crystallography (SFX) is severely limited by the scarcity of X-ray free-electron laser (XFEL) sources. However, recent and future upgrades render microfocus beamlines at synchrotron-radiation sources suitable for room-temperature serial crystallography data collection also. Owing to the longer exposure times that are needed at synchrotrons, serial data collection is termed serial millisecond crystallography (SMX). As a result, the number of SMX experiments is growing rapidly, with a dozen experiments reported so far. Here, the first high-viscosity injector-based SMX experiments carried out at a US synchrotron source, the Advanced Photon Source (APS), are reported. Microcrystals (5-20 mu m) of a wide variety of proteins, including lysozyme, thaumatin, phycocyanin, the human A(2A) adenosine receptor (A(2A)AR), the soluble fragment of the membrane lipoprotein Flpp3 and proteinase K, were screened. Crystals suspended in lipidic cubic phase (LCP) or a high-molecular-weight poly(ethylene oxide) (PEO; molecular weight 8 000 000) were delivered to the beam using a high-viscosity injector. In-house data-reduction (hit-finding) software developed at APS as well as the SFX data-reduction and analysis software suites Cheetah and CrystFEL enabled efficient on-site SMX data monitoring, reduction and processing. Complete data sets were collected for A(2A)AR, phycocyanin, Flpp3, proteinase K and lysozyme, and the structures of A(2A)AR, phycocyanin, proteinase K and lysozyme were determined at 3.2, 3.1, 2.65 and 2.05 angstrom resolution, respectively. The data demonstrate the feasibility of serial millisecond crystallography from 5-20 mu m crystals using a high-viscosity injector at APS. The resolution of the crystal structures obtained in this study was dictated by the current flux density and crystal size, but upcoming developments in beamline optics and the planned APS-U upgrade will increase the intensity by two orders of magnitude. These developments will enable structure determination from smaller and/or weakly diffracting microcrystals.

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External Sources

  1. DOI: 10.1107/S205225251700570X
  2. PMID: 28875031
  3. PMCID: PMC5571807
  4. WOS: 000405296500016

Library Notes

  1. Fiscal Year: FY2016-2017
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