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  1. 1.   Cardiac progenitors instruct second heart field fate through Wnts
  2. Miyamoto, Matthew; Kannan, Suraj; Anderson,Matthew; Liu, Xihe; Suh, David; Htet, Myo; Li, Biyi; Kakani, Tejasvi; Murphy, Sean; Tampakakis, Emmanouil; Lewandoski,Mark; Andersen, Peter; Uosaki, Hideki; Kwon, Chulan
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jan 24; 120(4): e2217687120.
  1. 2.   Mechanism of lipid droplet formation by the yeast Sei1/Ldb16 Seipin complex
  2. Klug, Yoel A.; Deme, Justin C.; Corey, Robin A.; Renne, Mike F.; Stansfeld, Phillip J.; Lea, Susan M.; Carvalho, Pedro
  3. Nature Communications. 2021, Oct 8; 12(1):
  1. 3.   Structural basis of antifolate recognition and transport by PCFT
  2. Parker, Joanne L.; Deme,Justin; Kuteyi, Gabriel; Wu, Zhiyi; Huo, Jiandong; Goldman, I. David; Owens, Raymond J.; Biggin, Philip C.; Lea,Susan; Newstead, Simon
  3. Nature. 2021, Jul; 595(7865): 130-134.
  1. 4.   Asymmetric-flow field-flow fractionation for measuring particle size, drug loading and (in)stability of nanopharmaceuticals. The joint view of European Union Nanomedicine Characterization Laboratory and National Cancer Institute - Nanotechnology Characterization Laboratory
  2. Caputo, F; Mehn, D; Clogston,Jeffrey; Rösslein, M; Prina-Mello, A; Borgos, S E; Gioria, S; Calzolai, L
  3. Journal of chromatography. A. 2021, Jan 4; 1635: 461767.
  1. 5.   Sprouty2 regulates positioning of retinal progenitors through suppressing the Ras/Raf/MAPK pathway
  2. Sun,Jian; Yoon,Jaeho; Lee,Moonsup; Hwang,Rich Yooseok; Daar,Ira
  3. Scientific reports. 2020, Aug 13; 10(1): 13752.
  1. 6.   Anionic Lipids Impact RAS-Binding Site Accessibility and Membrane Binding Affinity of CRAF RBD-CRD
  2. Travers, Timothy; López, Cesar A; Agamasu, Constance; Hettige, Jeevapani J; Messing,Simon; García, Angel E; Stephen, Andrew G; Gnanakaran, S
  3. Biophysical journal. 2020, AUG 4; 119(3): 525-538.
  1. 7.   1.8 angstrom resolution structure of beta-galactosidase with a 200 kV CRYO ARM electron microscope
  2. Merk,Alan; Fukumura, Takuma; Zhu, Xing; Darling,Joseph; Grisshammer,Reinhard; Ognjenovic,Jana; Subramaniam, Sriram
  3. IUCRJ. 2020, JUL; 7(Part 4): 639-643.
  1. 8.   Characterization of Cationic Bolaamphiphile Vesicles for siRNA Delivery into Tumors and Brain
  2. Kim, Taejin; Viard,Mathias; Afonin, Kirill A; Gupta, Kshitij; Popov, Mary; Salotti,Jacqueline; Johnson,Peter; Linder, Charles; Heldman, Eliahu; Shapiro,Bruce
  3. Molecular therapy. Nucleic acids. 2020, JUN 5; 20: 359-372.
  1. 9.   The generality of the GUGA MRCI approach in COLUMBUS for treating complex quantum chemistry
  2. Lischka, Hans; Shepard, Ron; Müller, Thomas; Szalay, Péter G; Pitzer, Russell M; Aquino, Adelia J A; Araújo do Nascimento, Mayzza M; Barbatti, Mario; Belcher, Lachlan T; Blaudeau, Jean-Philippe; Borges, Itamar; Brozell, Scott R; Carter, Emily A; Das, Anita; Gidofalvi, Gergely; González, Leticia; Hase, William L; Kedziora, Gary; Kertesz, Miklos; Kossoski, Fábris; Machado, Francisco B C; Matsika, Spiridoula; do Monte, Silmar A; Nachtigallová, Dana; Nieman, Reed; Oppel, Markus; Parish, Carol A; Plasser, Felix; Spada, Rene F K; Stahlberg,Eric; Ventura, Elizete; Yarkony, David R; Zhang, Zhiyong
  3. The Journal of chemical physics. 2020, Apr 07; 152(13): 134110.
  1. 10.   Deducing putative ancestral forms of GNRA/receptor interactions from the ribosome
  2. Calkins, Erin R.; Zakrevsky,Paul; Keleshian, Vasken L.; Aguilar, Eduardo G.; Geary, Cody; Jaeger, Luc
  3. NUCLEIC ACIDS RESEARCH. 2019, Jan 10; 47(1): 480-494.
  1. 11.   Hybrid Correlation Energy (HyCE): An Approach Based on Separate Evaluations of Internal and External Components
  2. Ivanic, Joseph; Schmidt, Michael W.
  3. JOURNAL OF PHYSICAL CHEMISTRY A. 2018, Jun 14; 122(23): 5223-5237.
  1. 12.   A New Mixed All-Atom/Coarse-Grained Model: Application to Melittin Aggregation in Aqueous Solution
  2. Shelley, Mee Y.; SeIvan, Myvizhi Esai; Zhao, Jun; Babin, Volodymyr; Liao, Chenyi; Li, Jianing; Shelley, John C.
  3. JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 2017, Aug; 13(8): 3881-3897.
  1. 13.   Protocols for Molecular Dynamics Simulations of RNA Nanostructures.
  2. Kim, Taejin; Kasprzak, Wojciech; Shapiro, Bruce
  3. Methods in molecular biology (Clifton, N.J.). 2017 1632: 33-64.
  1. 14.   Non-SH2/PDZ reverse signaling by ephrins
  2. Daar, I. O.
  3. Seminars in Cell & Developmental Biology. 2012, Feb; 23(1): 65-74.
  1. 15.   Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine
  2. Afonin, K. A.; Grabow, W. W.; Walker, F. M.; Bindewald, E.; Dobrovolskaia, M. A.; Shapiro, B. A.; Jaeger, L.
  3. Nature Protocols. 2011, Dec; 6(12): 2022-2034.
  1. 16.   Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities
  2. Ying, J. F.; Wang, J. B.; Grishaev, A.; Yu, P.; Wang, Y. X.; Bax, A.
  3. Journal of Biomolecular Nmr. 2011, Sep; 51(1-2): 89-103.
  1. 17.   The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-beta Enhanceosome Example
  2. Pan, Y. P.; Nussinov, R.
  3. Plos Computational Biology. 2011, Jun; 7(6): 14.
  1. 18.   Solvent-Induced Shifts in Electronic Spectra of Uracil
  2. DeFusco, A.; Ivanic, J.; Schmidt, M. W.; Gordon, M. S.
  3. Journal of Physical Chemistry A. 2011, May; 115(18): 4574-4582.
  1. 19.   Binding of a C-End Rule Peptide to the Neuropilin-1 Receptor: A Molecular Modeling Approach
  2. Haspel, N.; Zanuy, D.; Nussinov, R.; Teesalu, T.; Ruoslahti, E.; Aleman, C.
  3. Biochemistry. 2011, Mar; 50(10): 1755-1762.
  1. 20.   Nanoinformatics: an emerging area of information technology at the intersection of bioinformatics, computational chemistry and nanobiotechnology
  2. Gonzalez-Nilo, F. G.-N. F.; Perez-Acle, T.; Guinez-Molinos, S.; Geraldo, D. A.; Sandoval, C.; Yevenes, A.; Santos, L. S.; Laurie, V. F.; Mendoza, H.; Cachau, R. E.
  3. Biological Research. 2011 44(1): 43-51.
  1. 21.   Conformational Profile of a Proline-Arginine Hybrid
  2. Revilla-Lopez, G.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.; Zanuy, D.
  3. Journal of Chemical Information and Modeling. 2010, Oct; 50(10): 1781-1789.
  1. 22.   Electronic Structure Analysis of the Ground-State Potential Energy Curve of Be-2
  2. Schmidt, M. W.; Ivanic, J.; Ruedenberg, K.
  3. Journal of Physical Chemistry A. 2010, Aug; 114(33): 8687-8696.
  1. 23.   Computer tools in the discovery of HIV-1 integrase inhibitors
  2. Liao, C. Z.; Nicklaus, M. C.
  3. Future Medicinal Chemistry. 2010, Jul; 2(7): 1123-1140.
  1. 24.   Quantitative Analysis of MAP-Mediated Regulation of Microtubule Dynamic Instability In Vitro-Focus on Tau
  2. Kiris, E.; Ventimiglia, D.; Feinstein, S. C.
  3. Methods in cell biology. 2010; 95 : 481-503.
  1. 25.   Theoretical Characterization of Substrate Access/Exit Channels in the Human Cytochrome P450 3A4 Enzyme: Involvement of Phenylalanine Residues in the Gating Mechanism
  2. Fishelovitch, D.; Shaik, S.; Wolfson, H. J.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2009 113(39): 13018-13025.
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