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  1. 1.   Producing recombinant proteins in Vibrio natriegens
  2. Smith,Matthew; Hernández, José Sánchez; Messing,Simon; Ramakrishnan,Nitya; Higgins,Brianna; Mehalko,Jennifer; Perkins,Shelley; Wall,Vanessa; Grose,Carissa; Frank,Peter; Cregger, Julia; Le,Vi; Johnson,Adam; Sherekar, Mukul; Pagonis,Morgan; Drew,Matt; Hong,Min; Widmeyer, Stephanie R T; Denson,John-Paul; Snead,Kelly; Poon,Ivy; Waybright,Tim; Champagne, Allison; Esposito,Dom; Jones,Jane; Taylor,Troy; Gillette,Bill
  3. Microbial Cell Factories. 2024, Jul 24; 23(1): 208.
  1. 2.   A Zpr1 co-chaperone mediates folding of eukaryotic translation elongation factor 1A via a GTPase cycle
  2. McQuown, Alexander J; Nelliat, Anjali R; Reif, Dvir; Sabbarini, Ibrahim M; Membreno, Britnie Santiago; Wu,Colin; Denic, Vladimir
  3. Molecular Cell. 2023, Aug 16; 81(17): 3108-3122.
  1. 3.   Protein structure prediction using a docking-based hierarchical folding scheme
  2. Kifer, I.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Jun; 79(6): 1759-1773.
  1. 4.   Misfolded amyloid ion channels present mobile beta-sheet subunits in contrast to conventional ion channels
  2. Jang, H.; Arce, F. T.; Capone, R.; Ramachandran, S.; Lal, R.; Nussinov, R.
  3. Biophysical Journal. 2009, Dec 2; 97(11): 3029-37.
  1. 5.   Intra-molecular chaperone: the role of the N-terminal in conformational selection and kinetic control
  2. Tsai, C. J.; Ma, B.; Nussinov, R.
  3. Physical Biology. 2009 6(1): 13001-.
  1. 6.   Engineered CH2 domains (nanoantibodies)
  2. Dimitrov, D. S.
  3. Mabs. 2009, Jan-Feb; 1(1): 26-8.
  1. 7.   Targeting to the endoplasmic reticulum improves the folding of recombinant human telomerase reverse transcriptase
  2. Wu, C. K.; Gousset, K.; Hughes, S. H.
  3. Protein Expression and Purification. 2007, Nov; 56(1): 8-19.
  1. 8.   Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Physical Biology. 2005, DEC; 2(4, Sp. Iss.): S156-S165.
  1. 9.   How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues
  2. Haliloglu, T.; Keskin, O.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2005, MAR; 88(3): 1552-1559.
  1. 10.   Essential roles of a dynamic loop in the catalysis of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
  2. Blaszczyk, J.; Li, Y.; Wu, Y.; Shi, G. B.; Ji, X. H.; Yan, H. G.
  3. Biochemistry. 2004 43(6): 1469-1477.
  1. 11.   Molecular dynamics simulations of the unfolding of beta(2)- microglobulin and its variants
  2. Ma, B.; Nussinov, R.
  3. Protein Engineering. 2003 16(8): 561-575.
  1. 12.   Reducing the computational complexity of protein folding via fragment folding and assembly
  2. Haspel, N.; Tsai, C. J.; Wolfson, H.; Nussinov, R.
  3. Protein Science. 2003 12(6): 1177-1187.
  1. 13.   Energy landscape and dynamics of the beta-hairpin G peptide and its isomers: Topology and sequences
  2. Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2003 12(9): 1882-1893.
  1. 14.   Hierarchical protein folding pathways: A computational study of protein fragments
  2. Haspel, N.; Tsai, C. J.; Wolfson, H.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 2003 51(2): 203-215.
  1. 15.   Cyanovirin-N: a sugar-binding antiviral protein with a new twist
  2. Botos, I.; Wlodawer, A.
  3. Cellular and Molecular Life Sciences. 2003 60(2): 277-287.
  1. 16.   Stabilities and conformations of Alzheimer's beta-amyloid peptide oligomers (A beta(16-22 ') A beta(16-35 ') and A beta(10-35)): Sequence effects
  2. Ma, B. Y.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2002 99(22): 14126-14131.
  1. 17.   Molecular dynamics simulations of alanine rich beta-sheet oligomers: Insight into amyloid formation
  2. Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2002 11(10): 2335-2350.
  1. 18.   Comparison of protein fragments identified by limited proteolysis and by computational cutting of proteins
  2. Tsai, C. J.; de Laureto, P. P.; Fontana, A.; Nussinov, R.
  3. Protein Science. 2002 11(7): 1753-1770.
  1. 19.   Design and initial characterization of a circular permuted variant of the potent HIV-inactivating protein cyanovirin-N
  2. Barrientos, L. G.; Louis, J. M.; Hung, J.; Smith, T. H.; O'Keefe, B. R.; Gardella, R. S.; Mori, T.; Boyd, M. R.; Gronenborn, A. M.
  3. Proteins-Structure Function and Genetics. 2002 46(2): 153-160.
  1. 20.   Thermal unfolding molecular dynamics simulation of Escherichia coli dihydrofolate reductase: Thermal stability of protein domains and unfolding pathway
  2. Sham, Y. Y.; Ma, B. Y.; Tsai, C. J.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 2002 46(3): 308-320.
  1. 21.   The domain-swapped dimer of cyanovirin-N is in a metastable folded state: Reconciliation of X-ray and NMR structures
  2. Barrientos, L. G.; Louis, J. M.; Botos, I.; Mori, T.; Han, Z. Z.; O'Keefe, B. R.; Boyd, M. R.; Wlodawer, A.; Gronenborn, A. M.
  3. Structure. 2002 10(5): 673-686.
  1. 22.   Close-range electrostatic interactions in proteins
  2. Kumar, S.; Nussinov, R.
  3. Chembiochem. 2002 3(7): 604-617.
  1. 23.   Single amino acid substitutions on the surface of Escherichia coli maltose-binding protein can have a profound impact on the solubility of fusion proteins
  2. Fox, J. D.; Kapust, R. B.; Waugh, D. S.
  3. Protein Science. 2001 10(3): 622-630.
  1. 24.   Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: Relative stabilities in experiment and simulations
  2. Sham, Y. Y.; Ma, B. Y.; Tsai, C. J.; Nussinov, R.
  3. Protein Science. 2001 10(1): 135-148.
  1. 25.   The building block folding model and the kinetics of protein folding
  2. Tsai, C. J.; Nussinov, R.
  3. Protein Engineering. 2001 14(10): 723-733.
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