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  1. 1.   Comparative Genomic Hybridization (CGH) in New World Monkeys (Primates) Reveals the Distribution of Repetitive Sequences in Cebinae and Callitrichinae
  2. Milioto, Vanessa; Arizza, Vincenzo; Vizzini, Aiti; Perelman, Polina L; Roelke-Parker,Melody; Dumas, Francesca
  3. Biology. 2024, Dec 29; 14(1):
  1. 2.   Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4
  2. Zhou, Bing-Rui; Feng, Hanqiao; Huang, Furong; Zhu, Iris; Portillo-Ledesma, Stephanie; Shi,Dan; Zaret, Kenneth S; Schlick, Tamar; Landsman, David; Wang, Qianben; Bai, Yawen
  3. Molecular Cell. 2024, Jul 31;
  1. 3.   Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance
  2. Nathanailidou, Patroula; Dhakshnamoorthy, Jothy; Xiao, Hua; Zofall, Martin; Holla, Sahana; O'Neill,Maura; Andresson,Thorkell; Wheeler, David; Grewal, Shiv I S
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Feb 06; 121(6): e2315596121.
  1. 4.   ATAC Sequencing Protocol For Cryopreserved Mammalian Cells
  2. Caravaca-Guasch,Juan Manuel; Mehta,Monika; Gowda,Sujatha; Tran,Bao
  3. Boi-Protocol . 2022, Jan 20; 12(2):
  1. 5.   Spatial and Functional Organization of Human Papillomavirus Replication Foci in the Productive Stage of Infection
  2. Khurana, Simran; Markowitz,Tovah; Kabat, Juraj; McBride, Alison A
  3. mBio. 2021, Dec 21; 12(6): e0268421.
  1. 6.   Signaling in the crowded cell
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Current Opinion in Structural Biology. 2021, Dec; 71: 43-50.
  1. 7.   The epigenetic regulator LSH maintains fork protection and genomic stability via MacroH2A deposition and RAD51 filament formation
  2. Xu,Xiaoping; Ni, Kai; He,Yafeng; Ren, Jianke; Sun, Chongkui; Liu, Yie; Aladjem, Mirit; Burkett, Sandra; Finney, Richard; Ding, Xia; Sharan,Shyam; Muegge,Kathrin
  3. Nature communications. 2021, Jun 10; 12(1):
  1. 8.   Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms
  2. Zhou, Bing-Rui; Feng, Hanqiao; Kale, Seyit; Fox,Tara; Khant,Htet; De Val Alda,Natalia; Ghirlando, Rodolfo; Panchenko, Anna R; Bai, Yawen
  3. Molecular cell. 2021, Jan 7; 81(1): 166-182.
  1. 9.   Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics
  2. Beklemisheva, Violetta R; Perelman, Polina L; Lemskaya, Natalya A; Proskuryakova, Anastasia A; Serdyukova, Natalya A; Burkanov, Vladimir N; Gorshunov, Maksim B; Ryder, Oliver; Thompson,Mary; Lento, Gina; O'Brien, Stephen J; Graphodatsky, Alexander S
  3. Genes. 2020, Dec 10; 11(12): pii: E1485.
  1. 10.   LSH mediates gene repression through macroH2A deposition
  2. Ni,Kai; Ren, Jianke; Xu,Xiaoping; He,Yafeng; Finney, Richard; Braun, Simon M. G.; Hathaway, Nathaniel A.; Crabtree, Gerald R.; Muegge,Kathrin
  3. NATURE COMMUNICATIONS. 2020, NOV 6; 11(1):
  1. 11.   Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability
  2. Sebastian, Robin; Hosogane, Eri K; Sun, Eric G; Tran, Andy D; Reinhold, William C; Burkett,Sandra; Sturgill, David M; Gudla, Prabhakar R; Pommier, Yves; Aladjem, Mirit I; Oberdoerffer, Philipp
  3. Molecular cell. 2020, SEP 3; 79(5): 836-+.
  1. 12.   Lsh/HELLS is required for B lymphocyte development and immunoglobulin class switch recombination
  2. He,Yafeng; Ren,Jianke; Xu,Xiaoping; Ni,Kai; Schwader, Andrew; Finney, Richard; Wang, Can; Sun, Lei; Klarmann, Kimberly; Keller,Jonathan; Tubbs, Anthony; Nussenzweig, Andre; Muegge, Kathrin
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, AUG 18; 117(33): 20100-20108.
  1. 13.   Are Parallel Proliferation Pathways Redundant?
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Trends in biochemical sciences. 2020, Jul; 45(7): 554-563.
  1. 14.   Benzodiazepines Drive Alteration of Chromatin at the Integrated HIV-1 LTR
  2. Elbezanti, Weam; Lin, Angel; Schirling, Alexis; Jackson, Alexandria; Marshall, Matthew; Duyne, Rachel Van; Maldarelli,Frank; Sardo, Luca; Klase, Zachary
  3. Viruses. 2020, Feb 09; 12(2): pii: v12020191.
  1. 15.   Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility
  2. Stavreva, Diana A; Garcia, David A; Fettweis, Gregory; Gudla, Prabhakar R; Zaki,George; Soni, Vikas; McGowan, Andrew; Williams, Geneva; Huynh, Anh; Palangat, Murali; Schiltz, R Louis; Johnson, Thomas A; Presman, Diego M; Ferguson, Matthew L; Pegoraro, Gianluca; Upadhyaya, Arpita; Hager, Gordon L
  3. Molecular cell. 2019, SEP 19; 75(6): 1161-+.
  1. 16.   Identification of an Intronic Regulatory Element Necessary for Tissue-Specific Expression of Foxn1 in Thymic Epithelial Cells
  2. Larsen, Brian M; Cowan, Jennifer E; Wang, Yueqiang; Tanaka, Yu; Zhao, Yongge; Voisin, Benjamin; Constantinides, Michael G; Nagao, Keisuke; Belkaid, Yasmine; Awasthi,Roackie; Takahama, Yousuke; Bhandoola, Avinash
  3. Journal of immunology (Baltimore, Md. : 1950). 2019, AUG 1; 203(3): 686-695.
  1. 17.   Chemical genomics reveals histone deacetylases are required for core regulatory transcription
  2. Gryder, Berkley E.; Wu, Lei; Woldemichael,Girma; Pomella, Silvia; Quinn, Taylor R.; Park, Paul M. C.; Cleveland, Abigail; Stanton, Benjamin Z.; Song, Young; Rota, Rossella; Wiest, Olaf; Yohe, Marielle E.; Shern, Jack F.; Qi, Jun; Khan, Javed
  3. Nature communications. 2019, Jul 8; 10(1):
  1. 18.   The chromatin remodeling protein Lsh alters nucleosome occupancy at putative enhancers and modulates binding of lineage specific transcription factors
  2. Ren, Jianke; Finney, Richard; Ni, Kai; Cam, Maggie; Muegge, Kathrin
  3. Epigenetics. 2019, MAR 4; 14(3): 277-293.
  1. 19.   The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
  2. Ricketts, Christopher J; De Cubas, Aguirre A; Fan, Huihui; Smith, Christof C; Lang, Martin; Reznik, Ed; Bowlby, Reanne; Gibb, Ewan A; Akbani, Rehan; Beroukhim, Rameen; Bottaro, Donald P; Choueiri, Toni K; Gibbs, Richard A; Godwin, Andrew K; Haake, Scott; Hakimi, A Ari; Henske, Elizabeth P; Hsieh, James J; Ho, Thai H; Kanchi, Rupa S; Krishnan, Bhavani; Kwaitkowski, David J; Lui, Wembin; Merino, Maria J; Mills, Gordon B; Myers, Jerome; Nickerson, Michael L; Reuter, Victor E; Schmidt, Laura S; Shelley, C Simon; Shen, Hui; Shuch, Brian; Signoretti, Sabina; Srinivasan, Ramaprasad; Tamboli, Pheroze; Thomas, George; Vincent, Benjamin G; Vocke, Cathy D; Wheeler, David A; Yang, Lixing; Kim, William T; Robertson, A Gordon; Spellman, Paul T; Rathmell, W Kimryn; Linehan, W Marston
  3. Cell Reports. 2018, Apr 03; 23(1): 313-326.e5.
  1. 20.   Replication Stress Shapes a Protective Chromatin Environment across Fragile Genomic Regions
  2. Kim, Jeongkyu; Sturgill, David; Sebastian, Robin; Khurana, Simran; Tran, Andy D; Edwards, Garrett B; Kruswick, Alex; Burkett, Sandra; Hosogane, Eri K; Hannon, William W; Weyemi, Urbain; Bonner, William M; Luger, Karolin; Oberdoerffer, Philipp
  3. Molecular Cell. 2018, Jan 4; 69(1): 36-47.
  1. 21.   Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
  2. Kieffer-Kwon, Kyong-Rim; Nimura, Keisuke; Rao, Suhas S P; Xu, Jianliang; Jung, Seolkyoung; Pekowska, Aleksandra; Dose, Marei; Stevens, Evan; Mathe, Ewy; Dong, Peng; Huang, Su-Chen; Ricci, Maria Aurelia; Baranello, Laura; Zheng, Ying; Tomassoni Ardori, Francesco; Resch, Wolfgang; Stavreva, Diana; Nelson, Steevenson; McAndrew, Michael; Casellas, Adriel; Finn, Elizabeth; Gregory, Charles; St Hilaire, Brian Glenn; Johnson, Steven M; Dubois, Wendy; Cosma, Maria Pia; Batchelor, Eric; Levens, David; Phair, Robert D; Misteli, Tom; Tessarollo, Lino; Hager, Gordon; Lakadamyali, Melike; Liu, Zhe; Floer, Monique; Shroff, Hari; Aiden, Erez Lieberman; Casellas, Rafael
  3. Molecular Cell. 2017, Aug 17; 67(4): 566-578.
  1. 22.   SNF2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance and Proper Replication
  2. Taneja, Nitika; Zofall, Martin; Balachandran, Vanivilasini; Thillainadesan, Gobi; Sugiyama, Tomoyasu; Wheeler, David; Zhou, Ming; Grewal, Shiv I. S.
  3. MOLECULAR CELL. 2017, APR 6; 66(1): 50-+.
  1. 23.   Integrating Epigenomics into the Understanding of Biomedical Insight.
  2. Han, Yixing; He, Ximiao
  3. Bioinformatics and biology insights. 2016, Dec 4; 10: 267-289.
  1. 24.   High-throughput single-molecule screen for small-molecule perturbation of splicing and transcription kinetics
  2. Day, C. R.; Chen, H.; Coulon, A.; Meier, J. L.; Larson, D. R.
  3. Methods (San Diego, Calif.). 2016, 1-Mar; 96: 59-68.
  1. 25.   Going in the Right Direction: Mating-Type Switching of Schizosaccharomyces pombe Is Controlled by Judicious Expression of Two Different swi2 Transcripts
  2. Yu, C. H.; Bonaduce, M. J.; Klar, A. J. S.
  3. Genetics. 2012, Mar; 190(3): 977-U182.
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