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  1. 1.   Cationic Residues of the HIV-1 Nucleocapsid Protein Enable DNA Condensation to Maintain Viral Core Particle Stability during Reverse Transcription
  2. Gien, Helena; Morse, Michael; McCauley, Micah J; Rouzina, Ioulia; Gorelick,Robert; Williams, Mark C
  3. Viruses. 2024, May 29; 16(6): 872.
  1. 2.   Can incorporating genotyping data into efficacy estimators improve efficiency of early phase malaria vaccine trials?
  2. Potter, Gail E; Callier,Viviane; Shrestha, Biraj; Joshi, Sudhaunshu; Dwivedi, Ankit; Silva, Joana C; Laurens, Matthew B; Follmann, Dean A; Deye, Gregory A
  3. Malaria Journal. 2023, Dec 19; 22(1): 383.
  1. 3.   HIV-1 Nucleocapsid Protein Binds Double-Stranded DNA in Multiple Modes to Regulate Compaction and Capsid Uncoating
  2. Gien, Helena; Morse, Michael; McCauley, Micah J; Kitzrow, Jonathan P; Musier-Forsyth, Karin; Gorelick,Robert; Rouzina, Ioulia; Williams, Mark C
  3. Viruses. 2022, Jan 25; 14(2):
  1. 4.   The HIV-1 Nucleocapsid Regulates Its Own Condensation by Phase-Separated Activity-Enhancing Sequestration of the Viral Protease during Maturation
  2. Lyonnais, Sébastien; Sadiq, S Kashif; Lorca-Oró, Cristina; Dufau, Laure; Nieto-Marquez, Sara; Escribà, Tuixent; Gabrielli, Natalia; Tan, Xiao; Ouizougun-Oubari, Mohamed; Okoronkwo, Josephine; Reboud-Ravaux, Michèle; Gatell, José Maria; Marquet, Roland; Paillart, Jean-Christophe; Meyerhans, Andreas; Tisné, Carine; Gorelick,Robert; Mirambeau, Gilles
  3. Viruses. 2021, Nov 19; 13(11):
  1. 5.   Mechanism of lipid droplet formation by the yeast Sei1/Ldb16 Seipin complex
  2. Klug, Yoel A.; Deme, Justin C.; Corey, Robin A.; Renne, Mike F.; Stansfeld, Phillip J.; Lea, Susan M.; Carvalho, Pedro
  3. Nature Communications. 2021, Oct 8; 12(1):
  1. 6.   Structural basis of antifolate recognition and transport by PCFT
  2. Parker, Joanne L.; Deme,Justin; Kuteyi, Gabriel; Wu, Zhiyi; Huo, Jiandong; Goldman, I. David; Owens, Raymond J.; Biggin, Philip C.; Lea,Susan; Newstead, Simon
  3. Nature. 2021, Jul; 595(7865): 130-134.
  1. 7.   A combined approach to characterize ligand-induced solid-solid phase transitions in biomacromolecular crystals
  2. Ramakrishnan, Saminathan; Stagno,Jason; Magidson,Valentin; Heinz,Will; Wang,Yun-Xing
  3. Journal of applied crystallography. 2021, Jun 01; 54(Pt 3): 787-796.
  1. 8.   Structural mimicry drives HIV-1 Rev-mediated HERV-K expression
  2. O'Carroll, Ina P; Fan,Lixin; Kroupa,Tomas; McShane, Erin K; Theodore, Christophe; Yates, Elizabeth A; Kondrup, Benjamin; Ding,Jienyu; Martin, Tyler S; Rein,Alan; Wang,Yun-Xing
  3. Journal of molecular biology. 2020, Dec 4; 432(24): pii: S0022-2836(20)30630-6.
  1. 9.   Protein-Assisted Room-Temperature Assembly of Rigid, Immobile Holliday Junctions and Hierarchical DNA Nanostructures
  2. Ramakrishnan,Saminathan; Subramaniam, Sivaraman; Kielar, Charlotte; Grundmeier, Guido; Stewart, A. Francis; Keller, Adrian
  3. MOLECULES. 2020, NOV; 25(21):
  1. 10.   Anionic Lipids Impact RAS-Binding Site Accessibility and Membrane Binding Affinity of CRAF RBD-CRD
  2. Travers, Timothy; López, Cesar A; Agamasu, Constance; Hettige, Jeevapani J; Messing,Simon; García, Angel E; Stephen, Andrew G; Gnanakaran, S
  3. Biophysical journal. 2020, AUG 4; 119(3): 525-538.
  1. 11.   Characterization challenges for a cellulose nanocrystal reference material: dispersion and particle size distributions
  2. Jakubek, Zygmunt J.; Chen, Maohui; Couillard, Martin; Leng, Tianyang; Liu, Leslie; Zou, Shan; Baxa, Ulrich; Clogston, Jeffrey; Hamad, Wadood Y.; Johnston, Linda J.
  3. JOURNAL OF NANOPARTICLE RESEARCH. 2018, APR 5; 20(4):
  1. 12.   A New Mixed All-Atom/Coarse-Grained Model: Application to Melittin Aggregation in Aqueous Solution
  2. Shelley, Mee Y.; SeIvan, Myvizhi Esai; Zhao, Jun; Babin, Volodymyr; Liao, Chenyi; Li, Jianing; Shelley, John C.
  3. JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 2017, Aug; 13(8): 3881-3897.
  1. 13.   Amyloid beta Ion Channels in a Membrane Comprising Brain Total Lipid Extracts
  2. Lee, Joon; Kim, Young Hun; Arce, Fernando T.; Gillman, Alan L.; Jang, Hyunbum; Kagan, Bruce L.; Nussinov, Ruth; Yang, Jerry; Lal, Ratnesh
  3. ACS CHEMICAL NEUROSCIENCE. 2017, Jun 21; 8(6): 1348-1357.
  1. 14.   Folding behavior of a T-shaped, ribosome-binding translation enhancer implicated in a wide-spread conformational switch
  2. Le, My-Tra; Kasprzak, Wojciech; Kim, Taejin; Gao, Feng; Young, Megan Y. L.; Yuan, Xuefeng; Shapiro, Bruce; Seog, Joonil; Simon, Anne E.
  3. ELIFE. 2017, Feb 13; 6: e22883.
  1. 15.   Protocols for Molecular Dynamics Simulations of RNA Nanostructures.
  2. Kim, Taejin; Kasprzak, Wojciech; Shapiro, Bruce
  3. Methods in molecular biology (Clifton, N.J.). 2017 1632: 33-64.
  1. 16.   All-D-Enantiomer of beta-Amyloid Peptide Forms Ion Channels in Lipid Bilayers
  2. Capone, R.; Jang, H.; Kotler, S. A.; Connelly, L.; Arce, F. T.; Ramachandran, S.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Journal of Chemical Theory and Computation. 2012, Mar; 8(3): 1143-1152.
  1. 17.   The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes
  2. Bintu, L.; Kopaczynska, M.; Hodges, C.; Lubkowska, L.; Kashlev, M.; Bustamante, C.
  3. Nature Structural & Molecular Biology. 2011, Dec; 18(12): 1394-U112.
  1. 18.   Computer Simulations of Cell Sorting Due to Differential Adhesion
  2. Zhang, Y.; Thomas, G. L.; Swat, M.; Shirinifard, A.; Glazier, J. A.
  3. Plos One. 2011, Oct; 6(10): 11.
  1. 19.   Polymorphism of amyloid beta peptide in different environments: implications for membrane insertion and pore formation
  2. Arce, F. T.; Jang, H. B.; Ramachandran, S.; Landon, P. B.; Nussinov, R.; Lal, R.
  3. Soft Matter. 2011, Jun 7; 7(11): 5267-5273.
  1. 20.   The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-beta Enhanceosome Example
  2. Pan, Y. P.; Nussinov, R.
  3. Plos Computational Biology. 2011, Jun; 7(6): 14.
  1. 21.   Antimicrobial Protegrin-1 Forms Amyloid-Like Fibrils with Rapid Kinetics Suggesting a Functional Link
  2. Jang, H. J. H.; Arce, F. T.; Mustata, M.; Ramachandran, S.; Capone, R.; Nussinov, R.; Lal, R.
  3. Biophysical Journal. 2011, Apr; 100(7): 1775-1783.
  1. 22.   Binding of a C-End Rule Peptide to the Neuropilin-1 Receptor: A Molecular Modeling Approach
  2. Haspel, N.; Zanuy, D.; Nussinov, R.; Teesalu, T.; Ruoslahti, E.; Aleman, C.
  3. Biochemistry. 2011, Mar; 50(10): 1755-1762.
  1. 23.   Nanoinformatics: an emerging area of information technology at the intersection of bioinformatics, computational chemistry and nanobiotechnology
  2. Gonzalez-Nilo, F. G.-N. F.; Perez-Acle, T.; Guinez-Molinos, S.; Geraldo, D. A.; Sandoval, C.; Yevenes, A.; Santos, L. S.; Laurie, V. F.; Mendoza, H.; Cachau, R. E.
  3. Biological Research. 2011 44(1): 43-51.
  1. 24.   beta-Barrel Topology of Alzheimer's beta-Amyloid Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Molecular Biology. 2010, Dec; 404(5): 917-934.
  1. 25.   Conformational Profile of a Proline-Arginine Hybrid
  2. Revilla-Lopez, G.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.; Zanuy, D.
  3. Journal of Chemical Information and Modeling. 2010, Oct; 50(10): 1781-1789.
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