Skip NavigationSkip to Content

NCI at Frederick Scientific Publications Advanced Search

Search
  1. NCI-F Publications

Search
  1. Year Published:

Your search returned 25 results.
User Information
Export Records
  1. 1.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 2.   Identification of Cis-Acting Elements in the 3 '-Untranslated Region of the Dengue Virus Type 2 RNA That Modulate Translation and Replication
  2. Manzano, M.; Reichert, E. D.; Polo, S.; Falgout, B.; Kasprzak, W.; Shapiro, B. A.; Padmanabhan, R.
  3. Journal of Biological Chemistry. 2011, Jun; 286(25): 22521-22534.
  1. 3.   CyloFold: secondary structure prediction including pseudoknots
  2. Bindewald, E.; Kluth, T.; Shapiro, B. A.
  3. Nucleic Acids Research. 2010, Jul; 38: W368-W372.
  1. 4.   An Intergenic Non-Coding rRNA Correlated with Expression of the rRNA and Frequency of an rRNA Single Nucleotide Polymorphism in Lung Cancer Cells
  2. Shiao, Y. H.; Lupascu, S. T.; Gu, Y. D.; Kasprzak, W.; Hwang, C. J.; Fields, J. R.; Leighty, R. M.; Quinones, O.; Shapiro, B. A.; Alvord, W. G.; Anderson, L. M.
  3. Plos One. 2009, Oct; 4(10): 11.
  1. 5.   The fraction of RNA that folds into the correct branched secondary structure determines hepatitis delta virus type 3 RNA editing levels
  2. Linnstaedt, S. D.; Kasprzak, W. K.; Shapiro, B. A.; Casey, J. L.
  3. Rna-a Publication of the Rna Society. 2009 15(6): 1177-1187.
  1. 6.   Structural domains within the 3 ' untranslated region of Turnip crinkle virus
  2. McCormack, J. C.; Yuan, X. F.; Yingling, Y. G.; Kasprzak, W.; Zamora, R. E.; Shapiro, B. A.; Simon, A. E.
  3. Journal of Virology. 2008 82(17): 8706-8720.
  1. 7.   Bridging the gap in RNA structure prediction
  2. Shapiro, B. A.; Yingling, Y. G.; Kasprzak, W.; Bindewald, E.
  3. Current Opinion in Structural Biology. 2007, Apr; 17(2): 157-165.
  1. 8.   Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm
  2. Shapiro, B. A.; Kasprzak, W.; Grunewald, C.; Aman, J.
  3. Journal of Molecular Graphics & Modelling. 2006, Dec; 25(4): 514-531.
  1. 9.   A pseudoknot in a preactive form of a viral RNA is part of a structural switch activating minus-strand synthesis
  2. Zhang, J. C.; Zhang, G. H.; Guo, R.; Shapiro, B. A.; Simon, A. E.
  3. Journal of Virology. 2006, Sep; 80(18): 9181-9191.
  1. 10.   Structural differentiation of the HIV-1 poly(A) signals
  2. Gee, A. H.; Kasprzak, W.; Shapiro, B. A.
  3. Journal of Biomolecular Structure & Dynamics. 2006, FEB; 23(4): 417-428.
  1. 11.   A base-specific recognition signal in the 5 ' consensus sequence of rotavirus plus-strand RNAs promotes replication of the double-stranded RNA genome segments
  2. Tortorici, M. A.; Shapiro, R. A.; Patton, J. T.
  3. Rna-a Publication of the Rna Society. 2006, JAN; 12(1): 133-146.
  1. 12.   RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers
  2. Bindewald, E.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2006 12(3): 342-352.
  1. 13.   Computational intelligence, bioinformatics and computational biology: A brief overview of methods, problems and perspectives
  2. Kasabov, N.; Sidorov, I. A.; Dimitrov, D. S.
  3. Journal of Computational and Theoretical Nanoscience. 2005, DEC; 2(4): 473-491.
  1. 14.   Prediction of multimolecular assemblies by multiple docking
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Molecular Biology. 2005, JUN 3; 349(2): 435-447.
  1. 15.   From structure to function: Methods and applications
  2. Wolfson, H. J.; Shatsky, M.; Schneidman-Duhovny, D.; Dror, O.; Shulman-Peleg, A.; Ma, B. Y.; Nussinov, R.
  3. Current Protein & Peptide Science. 2005, APR; 6(2): 171-183.
  1. 16.   Structural polymorphism of the HIV-1 leader region explored by computational methods
  2. Kasprzak, W.; Bindewald, E.; Shapiro, B. A.
  3. Nucleic Acids Research. 2005 33(22): 7151-7163.
  1. 17.   Multiple docking for protein structure prediction
  2. Inbar, Y.; Wolfson, H. J.; Nussinov, R.
  3. International Journal of Robotics Research. 2005, FEB-MAR; 24(2-3): 131-150.
  1. 18.   Glycine N-methyltransferase tumor susceptibility gene in the benzo(a)pyrene-detoxification pathway
  2. Chen, S. Y.; Lin, J. R. V.; Darbha, R.; Lin, P. P.; Liu, T. Y.; Chen, Y. M. A.
  3. Cancer Research. 2004 64(10): 3617-3623.
  1. 19.   Predicting molecular interactions in silico: I. A guide to pharmacophore identification and its applications to drug design
  2. Dror, O.; Shulman-Peleg, A.; Nussinov, R.; Wolfson, H. J.
  3. Current Medicinal Chemistry. 2004 11(1): 71-90.
  1. 20.   Predicting molecular interactions in silico: II. Protein- protein and protein-drug docking
  2. Schneidman-Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Current Medicinal Chemistry. 2004 11(1): 91-107.
  1. 21.   Principles of docking: An overview of search algorithms and a guide to scoring functions
  2. Halperin, I.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 2002 47(4): 409-443.
  1. 22.   RNA folding pathway functional intermediates: Their prediction and analysis
  2. Shapiro, B. A.; Bengali, D.; Kasprzak, W.; Wu, J. C.
  3. Journal of Molecular Biology. 2001 312(1): 27-44.
  1. 23.   Stem Trace: An interactive visual tool for comparative RNA structure analysis
  2. Kasprzak, W.; Shapiro, B. A.
  3. Bioinformatics. 1999 15(1): 16-31.
  1. 24.   Protein structure prediction in a 210-type lattice model: Parameter optimization in the genetic algorithm using orthogonal array
  2. Sun, Z. R.; Xia, X. F.; Guo, Q.; Xu, D.
  3. Journal of Protein Chemistry. 1999 18(1): 39-46.
  1. 25.   A method for biomolecular structural recognition and docking allowing conformational flexibility
  2. Sandak, B.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Computational Biology. 1998 5(4): 631-654.
NCI at Frederick

You are leaving a government website.

This external link provides additional information that is consistent with the intended purpose of this site. The government cannot attest to the accuracy of a non-federal site.

Linking to a non-federal site does not constitute an endorsement by this institution or any of its employees of the sponsors or the information and products presented on the site. You will be subject to the destination site's privacy policy when you follow the link.

ContinueCancel