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  1. 1.   Affinity Tag-Free Purification of SARS-CoV-2 N Protein and Its Crystal Structure in Complex with ssDNA
  2. Maiti,Atanu; Matsuo,Hiroshi
  3. Biomolecules. 2024, Nov 30; 14(12):
  1. 2.   Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature
  2. Chen, Julian C H; Gilski, Miroslaw; Chang, Changsoo; Borek, Dominika; Rosenbaum, Gerd; Lavens, Alex; Otwinowski, Zbyszek; Kubicki, Maciej; Dauter, Zbigniew; Jaskolski, Mariusz; Joachimiak, Andrzej
  3. IUCrJ. 2024, Sep 01; 11(Pt 5): 649-663.
  1. 3.   The trajectory patterns of single HIV-1 virus-like particle in live CD4 cells: A real time three-dimensional multi-resolution microscopy study using encapsulated nonblinking giant quantum dot
  2. Li, Wei-You; Yin, Shuhui; Huang, Szu-Wei; Yang, Ming-Hui; Chen, Patricia Mt; Wu, Shang-Rung; Welsher, Kevin; Yang, Haw; Arthur Chen, Yi-Ming
  3. Journal of Microbiology, Immunology, and Infection = Wei mian yu gan ran za zhi. 2022, Aug 28;
  1. 4.   High-Resolution Ribosome Profiling for Determining Ribosome Functional States During Translation Elongation
  2. Shafieinouri,Mohammad; Santiago Membreno,Britnie; Wu,Colin
  3. Methods in Molecular Biology (Clifton, N.J.). 2022 2428: 173-186.
  1. 5.   Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome
  2. Chen,Xiang; Dorris, Zachary; Shi,Dan; Huang, Rick K; Khant,Htet; Fox,Tara; De Val Alda,Natalia; Williams, Dewight; Zhang,Ping; Walters,Kylie
  3. Structure (London, England : 1993). 2020, NOV 3; 28(11): 1206-+.
  1. 6.   Quantification of lactoyl-CoA (lactyl-CoA) by liquid chromatography mass spectrometry in mammalian cells and tissues
  2. Varner, Erika L; Trefely, Sophie; Bartee,David; von Krusenstiern, Eliana; Izzo, Luke; Bekeova, Carmen; O'Connor, Roddy S; Seifert, Erin L; Wellen, Kathryn E; Meier,Jordan; Snyder, Nathaniel W
  3. Open biology. 2020, SEP 23; 10(9): 200187.
  1. 7.   Homogeneous Oligomers of Pro-apoptotic BAX Reveal Structural Determinants of Mitochondrial Membrane Permeabilization
  2. Hauseman, Zachary J; Harvey, Edward P; Newman, Catherine E; Wales, Thomas E; Bucci, Joel C; Mintseris, Julian; Schweppe, Devin K; David, Liron; Fan,Lixin; Cohen, Daniel T; Herce, Henry D; Mourtada, Rida; Ben-Nun, Yael; Bloch, Noah B; Hansen, Scott B; Wu, Hao; Gygi, Steven P; Engen, John R; Walensky, Loren D
  3. Molecular cell. 2020, JUL 2; 79(1): 68-+.
  1. 8.   Spatial organization of RNA polymerase and its relationship with transcription in Escherichia coli
  2. Weng, Xiaoli; Bohrer, Christopher H; Bettridge, Kelsey; Lagda, Arvin Cesar; Cagliero, Cedric; Jin, Ding Jun; Xiao, Jie
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, OCT 1; 116(40): 20115-20123.
  1. 9.   The mechanism of RNA duplex recognition and unwinding by DEAD-box helicase DDX3X
  2. Song, He; Ji,Xinhua
  3. NATURE COMMUNICATIONS. 2019, Jul 12; 10(1):
  1. 10.   Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenstrom macroglobulinemia
  2. McMaster, Mary L.; Berndt, Sonja; Zhang, Jianqing; Slager, Susan L.; Li,Shengchao; Vajdic, Claire M.; Smedby, Karin E.; Yan, Huihuang; Birmann, Brenda M.; Brown, Elizabeth E.; Smith, Alex; Kleinstern, Geffen; Fansler, Mervin M.; Mayr, Christine; Zhu,Bin; Chung,Charles; Park, Ju-Hyun; Burdette, Laurie; Hicks,Belynda; Hutchinson,Amy; Teras, Lauren R.; Adami, Hans-Olov; Bracci, Paige M.; McKay, James; Monnereau, Alain; Link, Brian K.; Vermeulen, Roel C. H.; Ansell, Stephen M.; Maria, Ann; Diver, W. Ryan; Melbye, Mads; Ojesina, Akinyemi; Kraft, Peter; Boffetta, Paolo; Clavel, Jacqueline; Giovannucci, Edward; Besson, Caroline M.; Canzia, Federico; Travis, Ruth C.; Vineis, Paolo; Weiderpass, Elisabete; Montalvan, Rebecca; Wang, Zhaoming; Yeager,Meredith; Becker, Nikolaus; Benavente, Yolanda; Brennan, Paul; Foretova, Lenka; Maynadie, Marc; Nieters, Alexandra; de Sanjose, Silvia; Staines, Anthony; Conde, Lucia; Riby, Jacques; Glimelius, Bengt; Hjalgrim, Henrik; Pradhan, Nisha; Feldman, Andrew L.; Novak, Anne J.; Lawrence, Charles; Bassig, Bryan A.; Lan, Qing; Zheng, Tongzhang; North, Kari E.; Tinker, Lesley F.; Cozen, Wendy; Severson, Richard K.; Hofmann, Jonathan N.; Zhang, Yawei; Jackson, Rebecca D.; Morton, Lindsay M.; Purdue, Mark P.; Chatterjee, Nilanjan; Offit, Kenneth; Cerhan, James R.; Chanock, Stephen J.; Rothman, Nathaniel; Vijai, Joseph; Goldin, Lynn R.; Skibola, Christine F.; Caporaso, Neil E.
  3. NATURE COMMUNICATIONS. 2018, OCT 10; 9(1): 4182.
  1. 11.   Blind prediction of noncanonical RNA structure at atomic accuracy
  2. Watkins, Andrew M.; Geniesse, Caleb; Kladwang, Wipapat; Zakrevsky, Paul; Jaeger, Luc; Das, Rhiju
  3. Science Advances. 2018, May 25; 4(5): eaar5316.
  1. 12.   High-Resolution Cryo-EM Maps and Models: A Crystallographer's Perspective.
  2. Wlodawer, Alexander; Li, Mi; Dauter, Zbigniew
  3. Structure (London, England : 1993). 2017, Oct 3; 25(10): 1589-1597.e1.
  1. 13.   `Atomic resolution': a badly abused term in structural biology.
  2. Wlodawer, Alexander; Dauter, Zbigniew
  3. Acta crystallographica. Section D, Structural biology. 2017, Apr 01; 73(Pt 4): 379-380.
  1. 14.   A Structural Basis for Reversible Photoswitching of Absorbance Spectra in Red Fluorescent Protein rsTagRFP
  2. Pletnev, S.; Subach, F. V.; Dauter, Z.; Wlodawer, A.; Verkhusha, V. V.
  3. Journal of Molecular Biology. 2012, Mar; 417(3): 144-151.
  1. 15.   PDB Ligand Conformational Energies Calculated Quantum-Mechanically
  2. Sitzmann, M.; Weidlich, I. E.; Filippov, I. V.; Liao, C.; Peach, M. L.; Ihlenfeldt, W. D.; Karki, R. G.; Borodina, Y. V.; Cachau, R. E.; Nicklaus, M. C.
  3. Journal of Chemical Information and Modeling. 2012, Mar; 52(3): 739-756.
  1. 16.   Towards an atlas of mammalian cell ultrastructure by cryo soft X-ray tomography
  2. Muller, W. G.; Heymann, J. B.; Nagashima, K.; Guttmann, P.; Werner, S.; Rehbein, S.; Schneider, G.; McNally, J. G.
  3. Journal of Structural Biology. 2012, Feb; 177(2): 179-192.
  1. 17.   Two ZnF-UBP Domains in Isopeptidase T (USP5)
  2. Avvakumov, G. V.; Walker, J. R.; Xue, S.; Allali-Hassani, A.; Asinas, A.; Nair, U. B.; Fang, X. Y.; Zuo, X. B.; Wane, Y. X.; Wilkinson, K. D.; Dhe-Paganon, S.
  3. Biochemistry. 2012, Feb; 51(6): 1188-1198.
  1. 18.   Biochemical, inhibition and inhibitor resistance studies of xenotropic murine leukemia virus-related virus reverse transcriptase
  2. Ndongwe, T. P.; Adedeji, A. O.; Michailidis, E.; Ong, Y. T.; Hachiya, A.; March, B.; Ryan, E. M.; Rai, D. K.; Kirby, K. A.; Whatley, A. S.; Burke, D. H.; Johnson, M.; Ding, S. L.; Zheng, Y. M.; Liu, S. L.; Kodama, E. I.; Delviks-Frankenberry, K. A.; Pathak, V. K.; Mitsuya, H.; Parniak, M. A.; Singh, K.; Sarafianos, S. G.
  3. Nucleic Acids Research. 2012, Jan; 40(1): 345-359.
  1. 19.   Femtomole SHAPE Reveals Regulatory Structures in the Authentic XMRV RNA Genome
  2. Grohman, J. K.; Kottegoda, S.; Gorelick, R. J.; Allbritton, N. L.; Weeks, K. M.
  3. Journal of the American Chemical Society. 2011, Dec; 133(50): 20326-20334.
  1. 20.   Solution Properties of Murine Leukemia Virus Gag Protein: Differences from HIV-1 Gag
  2. Datta, S. A. K.; Zuo, X. B.; Clark, P. K.; Campbell, S. J.; Wang, Y. X.; Rein, A.
  3. Journal of Virology. 2011, Dec; 85(23): 12733-12741.
  1. 21.   The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes
  2. Bintu, L.; Kopaczynska, M.; Hodges, C.; Lubkowska, L.; Kashlev, M.; Bustamante, C.
  3. Nature Structural & Molecular Biology. 2011, Dec; 18(12): 1394-U112.
  1. 22.   Ionic Liquids: Neoteric Solvents for Nucleoside Chemistry
  2. Kumar, V.; Parmar, V. S.; Malhotra, S. V.
  3. Current Organic Synthesis. 2011, Dec; 8(6): 777-786.
  1. 23.   Correlating SHAPE signatures with three-dimensional RNA structures
  2. Bindewald, E.; Wendeler, M.; Legiewicz, M.; Bona, M. K.; Wang, Y.; Pritt, M. J.; Le Grice, S. F. J.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2011, Sep; 17(9): 1688-1696.
  1. 24.   Interaction of RNA Polymerase II Fork Loop 2 with Downstream Non-template DNA Regulates Transcription Elongation
  2. Kireeva, M. L.; Domecq, C.; Coulombe, B.; Burton, Z. F.; Kashlev, M.
  3. Journal of Biological Chemistry. 2011, Sep; 286(35): 30898-30910.
  1. 25.   Structure and function of RapA: A bacterial Swi2/Snf2 protein required for RNA polymerase recycling in transcription
  2. Jin, D. J.; Zhou, Y. N.; Shaw, G.; Ji, X. H.
  3. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms. 2011, Sep; 1809(9): 470-475.
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