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  1. 1.   Co-incubation of Short Amphiphilic Peptides with Dicer Substrate RNAs Results in ß-Sheet Fibrils for Enhanced Gene Silencing in Cancer Cells
  2. Gupta, Kshitij; Parlea, Lorena; Puri,Anu; Smith, Katelyn; Puri,Anu; Bergman, Joseph T; Kim, Taejin; Shapiro,Bruce
  3. RNA Nanomed. 2024, Dec; 1(1): 61-78.
  1. 2.   Producing recombinant proteins in Vibrio natriegens
  2. Smith,Matthew; Hernández, José Sánchez; Messing,Simon; Ramakrishnan,Nitya; Higgins,Brianna; Mehalko,Jennifer; Perkins,Shelley; Wall,Vanessa; Grose,Carissa; Frank,Peter; Cregger, Julia; Le,Vi; Johnson,Adam; Sherekar, Mukul; Pagonis,Morgan; Drew,Matt; Hong,Min; Widmeyer, Stephanie R T; Denson,John-Paul; Snead,Kelly; Poon,Ivy; Waybright,Tim; Champagne, Allison; Esposito,Dom; Jones,Jane; Taylor,Troy; Gillette,Bill
  3. Microbial Cell Factories. 2024, Jul 24; 23(1): 208.
  1. 3.   A Zpr1 co-chaperone mediates folding of eukaryotic translation elongation factor 1A via a GTPase cycle
  2. McQuown, Alexander J; Nelliat, Anjali R; Reif, Dvir; Sabbarini, Ibrahim M; Membreno, Britnie Santiago; Wu,Colin; Denic, Vladimir
  3. Molecular Cell. 2023, Aug 16; 81(17): 3108-3122.
  1. 4.   Zinc-finger protein Zpr1 is a bespoke chaperone essential for eEF1A biogenesis
  2. Sabbarini, Ibrahim M; Reif, Dvir; McQuown, Alexander J; Nelliat, Anjali R; Prince, Jeffrey; Santiago Membreno,Britnie; Wu,Colin; Murray, Andrew W; Denic, Vladimir
  3. Molecular Cell. 2023, Jan 19; 83(2): 252-265.
  1. 5.   Optimization of production and characterization of a recombinant soluble human Cripto-1 protein inhibiting self-renewal of cancer stem cells
  2. Afify, Said M; Hassan, Ghmkin; Nawara, Hend M; H Zahra, Maram; Xu, Yanning; Alam, Md Jahangir; Saitoh, Koichi; Mansour, Hager; Abu Quora, Hagar A; Sheta, Mona; Monzur, Sadia; Du, Juan; Oh, Sue Young; Seno, Akimasa; Salomon,David; Seno, Masaharu
  3. Journal of Cellular Biochemistry. 2022, May 16;
  1. 6.   Three J-proteins impact Hsp104-mediated variant-specific prion elimination: a new critical role for a low-complexity domain
  2. Berger, Scott E.; Nolte, Anna M.; Kamiya,Erina; Hines, Justin K.
  3. Current genetics. 2020, Feb; 66(1): 51-58.
  1. 7.   Increased Protein Insolubility in Brains From a Subset of Patients With Schizophrenia
  2. Nucifora, Leslie G; MacDonald, Matthew L; Lee, Brian J; Peters, Matthew E; Norris, Alexis L; Orsburn, Benjamin C; Yang, Kun; Gleason, Kelly; Margolis, Russell L; Pevsner, Jonathan; Tamminga, Carol A; Sweet, Robert A; Ross, Christopher A; Sawa, Akira; Nucifora, Frederick C
  3. The American journal of psychiatry. 2019, SEP; 176(9): 730-743.
  1. 8.   Protein ensembles link genotype to phenotype
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. PLoS computational biology. 2019, Jun; 15(6):
  1. 9.   Structure and energetic basis of overrepresented ? light chain in systemic light chain amyloidosis patients
  2. Zhao, Jun; Zhang, Baohong; Zhu, Jianwei; Nussinov, Ruth; Ma, Buyong
  3. Biochimica et Biophysica Acta. 2018, Jun; 1864(6 Pt B): 2294-2303.
  1. 10.   Protein structure prediction using a docking-based hierarchical folding scheme
  2. Kifer, I.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Jun; 79(6): 1759-1773.
  1. 11.   Induced fit, conformational selection and independent dynamic segments: an extended view of binding events
  2. Csermely, P.; Palotai, R.; Nussinov, R.
  3. Trends in Biochemical Sciences. 2010, Oct; 35(10): 539-546.
  1. 12.   In vitro assembly of cubic RNA-based scaffolds designed in silico
  2. Afonin, K. A.; Bindewald, E.; Yaghoubian, A. J.; Voss, N.; Jacovetty, E.; Shapiro, B. A.; Jaeger, L.
  3. Nature Nanotechnology. 2010, Sep; 5(9): 676-682.
  1. 13.   Structural Convergence Among Diverse, Toxic beta-Sheet Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2010, Jul 29; 114(29): 9445-9451.
  1. 14.   Galectin-1 as a fusion partner for the production of soluble and folded human beta-1,4-galactosyltransferase-T7 in E. coil
  2. Pasek, M.; Boeggeman, E.; Ramakrishnan, B.; Qasba, P. K.
  3. Biochemical and Biophysical Research Communications. 2010, Apr; 394(3): 679-684.
  1. 15.   Why Does Binding of Proteins to DNA or Proteins to Proteins Not Necessarily Spell Function?
  2. Ma, B. Y.; Tsai, C. J.; Pan, Y. P.; Nussinov, R.
  3. Acs Chemical Biology. 2010, Mar; 5(3): 265-272.
  1. 16.   Mechanisms of transcription factor selectivity
  2. Pan, Y. P.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Trends in Genetics. 2010, Feb; 26(2): 75-83.
  1. 17.   Preferred drifting along the DNA major groove and cooperative anchoring of the p53 core domain: mechanisms and scenarios
  2. Pan, Y. P.; Nussinov, R.
  3. Journal of Molecular Recognition. 2010, Mar-Apr; 23(2): 232-240.
  1. 18.   Misfolded amyloid ion channels present mobile beta-sheet subunits in contrast to conventional ion channels
  2. Jang, H.; Arce, F. T.; Capone, R.; Ramachandran, S.; Lal, R.; Nussinov, R.
  3. Biophysical Journal. 2009, Dec 2; 97(11): 3029-37.
  1. 19.   The role of dynamic conformational ensembles in biomolecular recognition
  2. Boehr, D. D.; Nussinov, R.; Wright, P. E.
  3. Nature Chemical Biology. 2009 5(11): 789-796.
  1. 20.   The fraction of RNA that folds into the correct branched secondary structure determines hepatitis delta virus type 3 RNA editing levels
  2. Linnstaedt, S. D.; Kasprzak, W. K.; Shapiro, B. A.; Casey, J. L.
  3. Rna-a Publication of the Rna Society. 2009 15(6): 1177-1187.
  1. 21.   The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation
  2. Liu, J.; Nussinov, R.
  3. Plos Computational Biology. 2009 5(10):
  1. 22.   Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View
  2. Pan, Y. P.; Nussinov, R.
  3. Plos Computational Biology. 2009 5(7):
  1. 23.   Intra-molecular chaperone: the role of the N-terminal in conformational selection and kinetic control
  2. Tsai, C. J.; Ma, B.; Nussinov, R.
  3. Physical Biology. 2009 6(1): 13001-.
  1. 24.   Engineered CH2 domains (nanoantibodies)
  2. Dimitrov, D. S.
  3. Mabs. 2009, Jan-Feb; 1(1): 26-8.
  1. 25.   New structures help the modeling of toxic amyloid beta ion channels
  2. Jang, H. B.; Zheng, J.; Lal, R.; Nussinov, R.
  3. Trends in Biochemical Sciences. 2008 33(2): 91-100.
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