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  1. 1.   Viral escape mutations do not account for non-protection from SIVmac239 challenge in RhCMV/SIV vaccinated rhesus macaques
  2. Bimber, Benjamin N; Sunshine, Justine; McElfresh, G W; Reed, Jason S; Pathak, Reese; Bateman, Katherine B; Hughes, Colette M; Gilbride, Roxanne M; Ford, Julia C; Morrow, David; Lifson,Jeffrey; Sacha, Jonah B; Hansen, Scott G; Picker, Louis J
  3. Frontiers in Immunology. 2024 15: 1444621.
  1. 2.   Development of a bicistronic anti-CD19/CD20 CAR construct including abrogation of unexpected nucleic acid sequence deletions
  2. Lam, Norris; Finney, Richard; Yang, Shicheng; Choi, Stephanie; Wu,Xiaolin; Cutmore, Lauren; Andrade, Jorge; Huang, Lei; Amatya, Christina; Cam, Margaret; Kochenderfer, James N
  3. Molecular Therapy Oncolytics. 2023, Sep 21; 30: 132-149.
  1. 3.   Structural basis for cell type specific DNA binding of C/EBPß: the case of cell cycle inhibitor p15INK4b promoter
  2. Lountos, George T; Cherry, Scott; Tropea, Joseph E; Wlodawer, Alexander; Miller, Maria
  3. Journal of Structural Biology. 2022, Nov 04; 214(4): 107918.
  1. 4.   Complete Genome Sequence of Herpes Simplex Virus 2 Strain G
  2. Chang,Weizhong; Jiao, Xiaoli; Sui,Hongyan; Goswami, Suranjana; Sherman,Brad; Fromont,Caroline; Caravaca-Guasch,Juan Manuel; Tran,Bao; Imamichi,Tomozumi
  3. Viruses. 2022, Mar 05; 14(3):
  1. 5.   Evidence of SARS-CoV-2-Specific T-Cell-Mediated Myocarditis in a MIS-A Case
  2. Vannella, Kevin M; Oguz,Cihan; Stein, Sydney R; Pittaluga, Stefania; Dikoglu, Esra; Kanwal, Arjun; Ramelli, Sabrina C; Briese, Thomas; Su, Ling; Wu, Xiaolin; Ramos-Benitez, Marcos J; Perez-Valencia, Luis J; Babyak, Ashley; Cha, Nu Ri; Chung, Joon-Yong; Ylaya, Kris; Madathil, Ronson J; Saharia, Kapil K; Scalea, Thomas M; Tran, Quincy K; Herr, Daniel L; Kleiner, David E; Hewitt, Stephen M; Notarangelo, Luigi D; Grazioli, Alison; Chertow, Daniel S
  3. Frontiers in Immunology. 2021, Dec 9; 12: 779026.
  1. 6.   Integration of adeno-associated virus (AAV) into the genomes of most Thai and Mongolian liver cancer patients does not induce oncogenesis
  2. Schaffer, Alejandro A.; Dominguez, Dana A.; Chapman, Lesley M.; Gertz, E. Michael; Budhu, Anuradha; Forgues, Marshonna; Chaisaingmongkol, Jittiporn; Rabibhadana, Siritida; Pupacdi, Benjarath; Wu,Xiaolin; Bayarsaikhan, Enkhjargal; Harris, Curtis C.; Ruchirawat, Mathuros; Ruppin, Eytan; Wang, Xin Wei
  3. BMC GENOMICS. 2021, Nov 11; 22(1):
  1. 7.   Arrow pushing in RNA modification sequencing
  2. Bartee,David; Thalalla Gamage,Supuni; Link,Courtney; Meier,Jordan
  3. Chemical Society reviews. 2021, Jul 14;
  1. 8.   Verification of CRISPR editing and finding transgenic inserts by Xdrop indirect sequence capture followed by short- and long-read sequencing
  2. Blondal, Thorarinn; Gamba, Cristina; Jagd, Lea Moller; Su,Ling; Demirov,Dimiter; Guo,Amber; Johnston, Camille M.; Riising, Eva M.; Wu,Xiaolin; Mikkelsen, Marie J.; Szabova,Ludmila; Mouritzen, Peter
  3. Methods. 2021, Jul; 191: 68-77.
  1. 9.   HIVIntact: a python-based tool for HIV-1 genome intactness inference
  2. Wright, Imogen A.; Bale, Michael J.; Shao,Wei; Hu,Wei-Shau; Coffin, John M.; Van Zyl, Gert U.; Kearney,Mary
  3. Retrovirology. 2021, Jun 27; 18(1):
  1. 10.   Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67
  2. Zhang, Cui; Oguz,Cihan; Huse, Sue; Xia, Lu; Wu, Jian; Peng, Yu-Chih; Smith, Margaret; Chen, Jack; Long, Carole A; Lack,Justin; Su, Xin-Zhuan
  3. BMC Genomics. 2021, Apr 26; 22(1): 303.
  1. 11.   Patterns of Human Leukocyte Antigen Class I and Class II Associations and Cancer
  2. Liu, Zhiwei; Derkach, Andriy; Yu, Kelly J.; Yeager, Meredith; Chang, Yu-Sun; Chen, Chien-Jen; Gyllensten, Ulf; Lan, Qing; Lee, Mei-Hsuan; McKay, James D.; Rothman, Nathaniel; Yang, Hwai-; Hildesheim, Allan; Pfeiffer, Ruth M.
  3. Cancer Research. 2021, Feb 15; 81(4): 1148-1152.
  1. 12.   dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
  2. Ou, Jianhong; Liu, Haibo; Nirala, Niraj K.; Stukalov, Alexey; Acharya,Usha; Green, Michael R.; Zhu, Lihua Julie
  3. PLOS ONE. 2020, NOV 6; 15(11):
  1. 13.   2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
  2. Kuhn, Jens H; Adkins, Scott; Alioto, Daniela; Alkhovsky, Sergey V; Amarasinghe, Gaya K; Anthony, Simon J; Avšic-Županc, Tatjana; Ayllón, María A; Bahl, Justin; Balkema-Buschmann, Anne; Ballinger, Matthew J; Bartonicka, Tomáš; Basler, Christopher; Bavari, Sina; Beer, Martin; Bente, Dennis A; Bergeron, Éric; Bird, Brian H; Blair, Carol; Blasdell, Kim R; Bradfute, Steven B; Breyta, Rachel; Briese, Thomas; Brown, Paul A; Buchholz, Ursula J; Buchmeier, Michael J; Bukreyev, Alexander; Burt, Felicity; Buzkan, Nihal; Calisher, Charles H; Cao, Mengji; Casas, Inmaculada; Chamberlain, John; Chandran, Kartik; Charrel, Rémi N; Chen, Biao; Chiumenti, Michela; Choi, Il-Ryong; Clegg, J Christopher S; Crozier,Ian; da Graça, John V; Dal Bó, Elena; Dávila, Alberto M R; de la Torre, Juan Carlos; de Lamballerie, Xavier; de Swart, Rik L; Di Bello, Patrick L; Di Paola, Nicholas; Di Serio, Francesco; Dietzgen, Ralf G; Digiaro, Michele; Dolja, Valerian V; Dolnik, Olga; Drebot, Michael A; Drexler, Jan Felix; Dürrwald, Ralf; Dufkova, Lucie; Dundon, William G; Duprex, W Paul; Dye, John M; Easton, Andrew J; Ebihara, Hideki; Elbeaino, Toufic; Ergünay, Koray; Fernandes, Jorlan; Fooks, Anthony R; Formenty, Pierre B H; Forth, Leonie F; Fouchier, Ron A M; Freitas-Astúa, Juliana; Gago-Zachert, Selma; Gao, George Fú; García, María Laura; García-Sastre, Adolfo; Garrison, Aura R; Gbakima, Aiah; Goldstein, Tracey; Gonzalez, Jean-Paul J; Griffiths, Anthony; Groschup, Martin H; Günther, Stephan; Guterres, Alexandro; Hall, Roy A; Hammond, John; Hassan, Mohamed; Hepojoki, Jussi; Hepojoki, Satu; Hetzel, Udo; Hewson, Roger; Hoffmann, Bernd; Hongo, Seiji; Höper, Dirk; Horie, Masayuki; Hughes, Holly R; Hyndman, Timothy H; Jambai, Amara; Jardim, Rodrigo; Jiang, Dàohóng; Jin, Qi; Jonson, Gilda B; Junglen, Sandra; Karadag, Serpil; Keller, Karen E; Klempa, Boris; Klingström, Jonas; Kobinger, Gary; Kondo, Hideki; Koonin, Eugene V; Krupovic, Mart; Kurath, Gael; Kuzmin, Ivan V; Laenen, Lies; Lamb, Robert A; Lambert, Amy J; Langevin, Stanley L; Lee, Benhur; Lemos, Elba R S; Leroy, Eric M; Li, Dexin; Li, Jiànróng; Liang, Mifang; Liú, Wénwén; Liú, Yàn; Lukashevich, Igor S; Maes, Piet; Marciel de Souza, William; Marklewitz, Marco; Marshall, Sergio H; Martelli, Giovanni P; Martin, Robert R; Marzano, Shin-Yi L; Massart, Sébastien; McCauley, John W; Mielke-Ehret, Nicole; Minafra, Angelantonio; Minutolo, Maria; Mirazimi, Ali; Mühlbach, Hans-Peter; Mühlberger, Elke; Naidu, Rayapati; Natsuaki, Tomohide; Navarro, Beatriz; Navarro, José A; Netesov, Sergey V; Neumann, Gabriele; Nowotny, Norbert; Nunes, Márcio R T; Nylund, Are; Økland, Arnfinn L; Oliveira, Renata C; Palacios, Gustavo; Pallas, Vicente; Pályi, Bernadett; Papa, Anna; Parrish, Colin R; Pauvolid-Corrêa, Alex; Paweska, Janusz T; Payne, Susan; Pérez, Daniel R; Pfaff, Florian; Radoshitzky, Sheli R; Rahman, Aziz-Ul; Ramos-González, Pedro L; Resende, Renato O; Reyes, Carina A; Rima, Bertus K; Romanowski, Víctor; Robles Luna, Gabriel; Rota, Paul; Rubbenstroth, Dennis; Runstadler, Jonathan A; Ruzek, Daniel; Sabanadzovic, Sead; Salát, Jirí; Sall, Amadou Alpha; Salvato, Maria S; Sarpkaya, Kamil; Sasaya, Takahide; Schwemmle, Martin; Shabbir, Muhammad Z; Shí, Xiaohóng; Shí, Zhènglì; Shirako, Yukio; Simmonds, Peter; Širmarová, Jana; Sironi, Manuela; Smither, Sophie; Smura, Teemu; Song, Jin-Won; Spann, Kirsten M; Spengler, Jessica R; Stenglein, Mark D; Stone, David M; Straková, Petra; Takada, Ayato; Tesh, Robert B; Thornburg, Natalie J; Tomonaga, Keizo; Tordo, Noël; Towner, Jonathan S; Turina, Massimo; Tzanetakis, Ioannis; Ulrich, Rainer G; Vaira, Anna Maria; van den Hoogen, Bernadette; Varsani, Arvind; Vasilakis, Nikos; Verbeek, Martin; Wahl, Victoria; Walker, Peter J; Wang, Hui; Wang, Jianwei; Wang, Xifeng; Wang, Lin-Fa; Wèi, Tàiyún; Wells, Heather; Whitfield, Anna E; Williams, John V; Wolf, Yuri I; Wú, Zhìqiáng; Yang, Xin; Yáng, Xinglóu; Yu, Xuejie; Yutin, Natalya; Zerbini, F Murilo; Zhang, Tong; Zhang, Yong-Zhen; Zhou, Guohui; Zhou, Xueping
  3. Archives of virology. 2020, Sep 04;
  1. 14.   Calibration of pathogenicity due to variant-induced leaky splicing defects by using BRCA2 exon 3 as a model system
  2. Tubeuf, Hélène; Caputo, Sandrine M; Sullivan,Teresa; Rondeaux, Julie; Krieger, Sophie; Caux-Moncoutier, Virginie; Hauchard, Julie; Castelain, Gaia; Fiévet, Alice; Meulemans, Laëtitia; Révillion, Françoise; Léone, Mélanie; Boutry-Kryza, Nadia; Delnatte, Capucine; Guillaud-Bataille, Marine; Cleveland, Linda; Reid,Susan; Southon,Eileen; Soukarieh, Omar; Drouet, Aurélie; Di Giacomo, Daniela; Vezain, Myriam; Bonnet-Dorion, Françoise; Bourdon, Violaine; Larbre, Hélène; Muller, Danièle; Pujol, Pascal; Vaz, Fátima; Audebert-Bellanger, Séverine; Colas, Chrystelle; Venat-Bouvet, Laurence; Solano, Angela R; Stoppa-Lyonnet, Dominique; Houdayer, Claude; Frebourg, Thierry; Gaildrat, Pascaline; Sharan, Shyam K; Martins, Alexandra
  3. Cancer research. 2020, SEP 1; 80(17): 3593-3605.
  1. 15.   HLA-B Leader and Survivorship after HLA-Mismatched Unrelated Donor Transplantation
  2. Petersdorf, Effie W; Stevenson, Philip; Bengtsson, Mats; De Santis, Dianne; Dubois, Valerie; Gooley, Ted; Horowitz, Mary M; Hsu, Katharine C; Madrigal, Alejandro J; Malkki, Mari; McKallor, Caroline; Morishima, Yasuo; Oudshoorn, Machteld; Spellman, Stephen; Villard, Jean; Carrington,Mary
  3. Blood. 2020, JUL 16; 136(3): 362-369.
  1. 16.   Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma
  2. Choi, Jiyeon; Zhang, Tongwu; Vu, Andrew; Ablain, Julien; Makowski, Matthew M; Colli, Leandro M; Xu, Mai; Hennessey, Rebecca C; Yin, Jinhu; Rothschild, Harriet; Gräwe, Cathrin; Kovacs, Michael A; Funderburk, Karen M; Brossard, Myriam; Taylor, John; Pasaniuc, Bogdan; Chari,Raj; Chanock, Stephen J; Hoggart, Clive J; Demenais, Florence; Barrett, Jennifer H; Law, Matthew H; Iles, Mark M; Yu, Kai; Vermeulen, Michiel; Zon, Leonard I; Brown, Kevin M
  3. Nature communications. 2020, Jun 01; 11(1): 2718.
  1. 17.   Phenotypic and Molecular Epidemiology of ESBL-, AmpC-, and Carbapenemase-Producing Escherichia coli in Northern and Eastern Europe
  2. Sepp, Epp; Andreson, Reidar; Balode, Arta; Bilozor, Anastasia; Brauer, Age; Egorova, Svetlana; Huik,Kristi; Ivanova, Marina; Kaftyreva, Lidia; Kõljalg, Siiri; Kõressaar, Triinu; Makarova, Maria; Miciuleviciene, Jolanta; Pai, Kristiine; Remm, Maido; Rööp, Tiiu; Naaber, Paul
  3. Frontiers in microbiology. 2019, Nov 22; 10: 2465.
  1. 18.   Restriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences
  2. Schneider,Tom; Jejjala, Vishnu
  3. PloS one. 2019, OCT 31; 14(10): e0222419.
  1. 19.   Complete Genome Sequence of Herpes Simplex Virus 1 Strain McKrae
  2. Jiao,Xiaoli; Sui,Hongyan; Lyons, Christopher; Tran,Bao; Sherman,Brad; Imamichi,Tomozumi
  3. Microbiology resource announcements. 2019, Sep 26; 8(39): pii: e00993-19. .
  1. 20.   Complete Genome Sequence of Herpes Simplex Virus 1 Strain MacIntyre
  2. Jiao,Xiaoli; Sui,Hongyan; Lyons, Christopher; Tran,Bao; Sherman,Brad; Imamichi,Tomozumi
  3. Microbiology resource announcements. 2019, Sep 12; 8(37): pii: e00895-19.
  1. 21.   HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs
  2. De Scheerder, Marie-Angélique; Vrancken, Bram; Dellicour, Simon; Schlub, Timothy; Lee, Eunok; Shao,Wei; Rutsaert, Sofie; Verhofstede, Chris; Kerre, Tessa; Malfait, Thomas; Hemelsoet, Dimitri; Coppens, Marc; Dhondt, Annemieke; De Looze, Danny; Vermassen, Frank; Lemey, Philippe; Palmer, Sarah; Vandekerckhove, Linos
  3. Cell host & microbe. 2019, SEP 11; 26(3): 347-+.
  1. 22.   RNA2Drawer: Geometrically Strict Drawing of Nucleic Acid Structures with Graphical Structure Editing and Highlighting of Complementary Subsequences
  2. Johnson, Philip Z; Kasprzak,Wojciech; Shapiro,Bruce; Simon, Anne E
  3. RNA biology. 2019, Aug 26; 1-5.
  1. 23.   Lessons learned from two decades of BRCA1 and BRCA2 genetic testing: the evolution of data sharing and variant classification
  2. Toland, Amanda E.; Brody, Lawrence C.; Couch, Fergus J.; Culver, Julie O.; Eccles, Diana M.; Foulkes, William D.; Goldgar, David E.; Hogervorst, Frans; Houdayer, Claude; Levy-Lahad, Ephrat; Monteiro, Alvaro N.; Nathanson, Katherine L.; Neuhausen, Susan L.; Plon, Sharon E.; Sharan,Shyam; Spurdle, Amanda B.; Szabo, Csilla; Tavtigian, Sean V.; Wolfsberg, Tyra G.
  3. GENETICS IN MEDICINE. 2019, Jul; 21(7): 1476-1480.
  1. 24.   Targeting Non-cocing RNA Senslizes Cancer Cells to Drugs
  2. Yang,Mo; Schneekloth,Jay
  3. TRENDS IN PHARMACOLOGICAL SCIENCES. 2019, JUL; 40(7): 447-448.
  1. 25.   Phylogenetic inference for the study of within-host HIV-1 dynamics and persistence on antiretroviral therapy
  2. Capoferri, Adam A.; Bale,Michael; Simonetti, Francesco R.; Kearney,Mary
  3. The lancet. HIV. 2019, May; 6(5): E325-E333.
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