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ERK Allosteric Activation: The Importance of Two Ordered Phosphorylation Events

  1. Author:
    Regev,Clil
    Jang,Hyunbum
    Nussinov,Ruth
  2. Author Address

    Cancer Innovation Laboratory, National Cancer Institute at Frederick, Frederick, MD 21702, USA., Cancer Innovation Laboratory, National Cancer Institute at Frederick, Frederick, MD 21702, USA; Computational Structural Biology Section, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA., Cancer Innovation Laboratory, National Cancer Institute at Frederick, Frederick, MD 21702, USA; Computational Structural Biology Section, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA; Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel. Electronic address: NussinoR@mail.nih.gov.,
    1. Year: 2025
    2. Date: Apr 09
    3. Epub Date: 2025 04 09
  1. Journal: Journal of Molecular Biology
    1. Pages: 169130
  2. Type of Article: Article
  3. Article Number: 169130
  1. Abstract:

    ERK, a coveted proliferation drug target, is a pivotal kinase in the Ras/ERK signaling cascade. Despite this, crucial questions about its activation have not been fully explored on the foundational, conformational level. Such questions include (i) Why ERK's activation demands dual phosphorylation; (ii) What is the role of each phosphorylation site in the activation loop; and (iii) Exactly how the (ordered) phosphorylation steps affect the conformational ensembles of the activation loop, their propensities and restriction to a narrower range favoring ERK's catalytic action. Here we used explicit molecular dynamics simulations to study ERK's stability and the conformational changes in different stages along the activation process. The initial monophosphorylation event elongates the activation loop to enable successive phosphorylations, which reintroduce stability/compactness through newly formed salt bridges. The interactions formed by monophosphorylation are site-dependent, with threonine's phosphorylation presenting stronger electrostatic interactions compared to tyrosine's. Dual phosphorylated ERKs revealed a compact kinase structure which allows the HRD catalytic motif to stabilize the ATP. We further observe that the hinge and the homodimerization binding site responded to a tri-state signaling code based solely on the phosphorylation degree (unphosphorylated, monophosphorylated, dual phosphorylated) of the activation loop, confirming that the activation loop can allosterically influence distant regions. Last, our findings indicate that threonine phosphorylation as the second step is necessary for ERK to become effectively activated and that activation depends on the phosphorylation order. Collectively, we offer ERK's dual allosteric phosphorylation code in activation and explain why the phosphorylation site order is crucial. Copyright © 2025 Elsevier Ltd. All rights reserved.

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External Sources

  1. DOI: 10.1016/j.jmb.2025.169130
  2. PMID: 40216017
  3. PII : S0022-2836(25)00196-2

Library Notes

  1. Fiscal Year: FY2024-2025
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