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RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

  1. Author:
    Bindewald, E.
    Hayes, R.
    Yingling, Y. G.
    Kasprzak, W.
    Shapiro, B. A.

  2. Author Address

    Hayes, Robert, Yingling, Yaroslava G.; Shapiro, Bruce A.] NCI, Ctr Canc Res Nanobiol Program, Frederick, MD 21702 USA. [Bindewald, Eckart, Kasprzak, Wojciech] SAIC Frederick, Basic Res Program, Frederick, MD 21702 USA.
    1. Year: 2008
  2. Journal: Nucleic Acids Research
    1. 36
    2. Pages: D392-D397
  4. Type of Article: Article
  1. Abstract:

    We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop-loop interactions. Our database provides a user- friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designing novel RNA structures on a nanoscale. The database can be accessed at: http://rnajunction.abcc.ncifcrf.gov/.

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External Sources

  1. PMID: 17947325

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