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  1. 1.   Modulation of the Substrate Preference of a MYST Acetyltransferase by a Scaffold Protein
  2. Sengupta, Raghuvir N; Brodsky, Oleg; Bingham, Patrick; Diehl, Wade C; Ferre, RoseAnn; Greasley, Samantha E; Johnson, Eric; Kraus, Michelle; Lieberman, Whitney; Meier,Jordan; Paul, Thomas A; Maegley, Karen A
  3. The Journal of Biological Chemistry. 2025, Feb 03; 108262.
  1. 2.   Polycistronic baculovirus expression of SUGT1 enables high-yield production of recombinant leucine-rich repeat proteins and protein complexes
  2. Snead,Kelly; Wall,Vanessa; Ambrose,Hannah; Esposito,Dom; Drew,Matt
  3. Protein Expression and Purification. 2022, Feb 04; 193: 106061.
  1. 3.   Structural insights into the function of the catalytically active human Taspase1
  2. Nagaratnam, Nirupa; Delker, Silvia L.; Jernigan, Rebecca; Edwards, Thomas E.; Snider, Janey; Thifault, Darren; Williams, Dewight; Nannenga, Brent L.; Stofega, Mary; Sambucetti, Lidia; Hsieh, James J.; Flint,Andrew; Fromme, Petra; Martin-Garcia, Jose M.
  3. Structure. 2021, Aug 5; 29(8): 873-+.
  1. 4.   Crystal structures of the complex of a kallikrein inhibitor from Bauhinia bauhinioides with trypsin and modeling of kallikrein complexes
  2. Li, Mi; Srp, Jaroslav; Gustchina, Alla; Dauter, Zbigniew; Mares, Michael; Wlodawer, Alexander
  3. Acta crystallographica. Section D, Structural biology. 2019, Jan 01; 75(Pt 1): 56-69.
  1. 5.   PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps (vol 72, pg 1137, 2016)
  2. Kuzu, Guray; Keskin, Ozlem; Nussinov, Ruth; Gursoy, Attila
  3. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY. 2018, JAN; 74(Pt 1): 65-66.
  1. 6.   PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps
  2. Kuzu, G.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Acta crystallographica. Section D, Structural biology. 2016, 1-Oct; 72(Pt 10): 1137-1148.
  1. 7.   SymmRef: A flexible refinement method for symmetric multimers
  2. Mashiach-Farkash, E.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Sep; 79(9): 2607-2623.
  1. 8.   Comparison of Strong Cation Exchange and SDS-PAGE Fractionation for Analysis of Multiprotein Complexes
  2. Das, S.; Bosley, A. D.; Ye, X. Y.; Chan, K. C.; Chu, I.; Green, J. E.; Issaq, H. J.; Veenstra, T. D.; Andresson, T.
  3. Journal of Proteome Research. 2010, Dec; 9(12): 6696-6704.
  1. 9.   Induced fit, conformational selection and independent dynamic segments: an extended view of binding events
  2. Csermely, P.; Palotai, R.; Nussinov, R.
  3. Trends in Biochemical Sciences. 2010, Oct; 35(10): 539-546.
  1. 10.   Signaling dynamics of the KSR1 scaffold complex
  2. McKay, M. M.; Ritt, D. A.; Morrison, D. K.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2009, Jul 7; 106(27): 11022-7.
  1. 11.   Genomic Analyses of Musashi1 Downstream Targets Show a Strong Association with Cancer-related Processes
  2. Abreu, R. D.; Sanchez-Diaz, P. C.; Vogel, C.; Burns, S. C.; Ko, D. J.; Burton, T. L.; Vo, D. T.; Chennasamudaram, S.; Le, S. Y.; Shapiro, B. A.; Penalva, L.
  3. Journal of Biological Chemistry. 2009 284(18): 12125-12135.
  1. 12.   Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View
  2. Pan, Y. P.; Nussinov, R.
  3. Plos Computational Biology. 2009 5(7):
  1. 13.   APOBEC3G induces a hypermutation gradient: purifying selection at multiple steps during HIV-1 replication results in levels of G-to-A mutations that are high in DNA, intermediate in cellular viral RNA, and low in virion RNA
  2. Russell, R. A.; Moore, M. D.; Hu, W. S.; Pathak, V. K.
  3. Retrovirology. 2009 6: 16.
  1. 14.   Proteomic analysis of protein complexes
  2. Zhou, M.; Veenstra, T. D.
  3. Proteomics. 2007, Aug; 7(16): 2688-2697.
  1. 15.   Vif is a RNA chaperone that could temporally regulate RNA dimerization and the early steps of HIV-1 reverse transcription
  2. Henriet, S.; Sinck, L.; Bec, G.; Gorelick, R. J.; Marquet, R.; Paillart, J. C.
  3. Nucleic Acids Research. 2007, Aug; 35(15): 5141-5153.
  1. 16.   The contribution of the Trp/Met/Phe residues to physical interactions of p53 with cellular proteins
  2. Ma, B. Y.; Pan, Y. P.; Gunasekaran, K.; Keskin, O.; Venkataraghavan, R. B.; Levine, A. J.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S56-S66.
  1. 17.   Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces
  2. Li, Y. L.; Huang, Y. P.; Swaminathan, C. P.; Smith-Gill, S. J.; Mariuzza, R. A.
  3. Structure. 2005, FEB; 13(2): 297-307.
  1. 18.   MAPPIS: Multiple 3D alignment of protein-protein interfaces
  2. Shulman-Peleg, A.; Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Computational Life Sciences. 2005; 3695 : 91-103.
  1. 19.   Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking
  2. Li, X.; Keskin, O.; Ma, B. Y.; Nussinov, R.; Liang, J.
  3. Journal of Molecular Biology. 2004, NOV 26; 344(3): 781-795.
  1. 20.   Human ORFeome version 1.1: A platform for reverse proteomics
  2. Rual, J. F.; Hirozane-Kishikawa, T.; Hao, T.; Bertin, N.; Li, S. M.; Dricot, A.; Li, N.; Rosenberg, J.; Lamesch, P.; Vidalain, P. O.; Clingingsmith, T. R.; Hartley, J. L.; Esposito, D.; Cheo, D.; Moore, T.; Simmons, B.; Sequerra, R.; Bosak, S.; Doucette-Stamm, L.; Le Peuch, C.; Vandenhaute, J.; Cusick, M. E.; Albala, J. S.; Hill, D. E.; Vidal, M.
  3. Genome Research. 2004, OCT; 14(10B): 2128-2135.
  1. 21.   Protein-protein interfaces: Recognition of similar spatial and chemical organizations
  2. Shulman-Peleg, A.; Mintz, S.; Nussinov, R.; Wolfson, H. J.
  3. Algorithms in Bioinformatics, Proceedings. 2004 3240: 194-205.
  1. 22.   Temperature differentially affects encounter and docking thermodynamics of antibody-antigen association
  2. Lipschultz, C. A.; Yee, A.; Mohan, S.; Li, Y. L.; Smith-Gill, S. J.
  3. Journal of Molecular Recognition. 2002 15(1): 44-52.
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