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  1. 1.   The dystonia gene THAP1 controls DNA double-strand break repair choice
  2. Shinoda, Kenta; Zong, Dali; Callen, Elsa; Wu, Wei; Dumitrache, Lavinia C.; Belinky, Frida; Chari,Raj; Wong, Nancy; Ishikawa, Momoko; Stanlie, Andre; Multhaupt-Buell, Trisha; Sharma, Nutan; Ozelius, Laurie; Ehrlich, Michelle; McKinnon, Peter J.; Nussenzweig, Andre
  3. MOLECULAR CELL. 2021, Jun 17; 81(12): 2611-2624.e10.
  1. 2.   A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome
  2. Mun, Seyoung; Kim, Songmi; Lee, Wooseok; Kang, Keunsoo; Meyer,Thomas; Han, Bok-Ghee; Han, Kyudong; Kim, Heui-Soo
  3. Experimental and Molecular Medicine. 2021, Apr; 53(4): 615-630.
  1. 3.   Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase
  2. Hickman, Alison B.; Voth, Andrea; Ewis, Hosam; Li, Xianghong; Craig, Nancy L.; Dyda, Fred
  3. NUCLEIC ACIDS RESEARCH. 2018, NOV 2; 46(19): 10286-10301.
  1. 4.   Therapeutic conserved elements (CE) DNA vaccine induces strong T-cell responses against highly conserved viral sequences during simian-human immunodeficiency virus infection
  2. Munson, Paul; Liu, Yi; Bratt, Debra; Fuller, James T; Hu, Xintao; Pavlakis, George; Felber, Barbara; Mullins, James I; Fuller, Deborah Heydenburg
  3. Human vaccines & immunotherapeutics. 2018, Apr 12; 14(7): 1820-1831.
  1. 5.   Control of transcriptional pausing by biased thermal fluctuations on repetitive genomic sequences
  2. Imashimizu, M.; Afek, A.; Takahashi, H.; Lubkowska, Lucyna; Lukatsky, D. B.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2016, Nov 22; 113(47): E7409-E7417.
  1. 6.   Structural genomic changes during mammalian ontogeny: a new dimension
  2. Shiao, Y. H.; Anderson, L. M.
  3. Epigenomics. 2012, Feb; 4(1): 1-4.
  1. 7.   Microwave-Based Reaction Screening: Tandem Retro-Diels Alder/Diels-Alder Cycloadditions of o-Quinol Dimers
  2. Dong, S. W.; Cahill, K. J.; Kang, M. I.; Colburn, N. H.; Henrich, C. J.; Wilson, J. A.; Beutler, J. A.; Johnson, R. P.; Porco, J. A.
  3. Journal of Organic Chemistry. 2011, Nov; 76(21): 8944-8954.
  1. 8.   3 ' UTR elements inhibit Ras-induced C/EBP beta post-translational activation and senescence in tumour cells
  2. Basu, S. K.; Malik, R.; Huggins, C. J.; Lee, S.; Sebastian, T.; Sakchaisri, K.; Quinones, O. A.; Alvord, W. G.; Johnson, P. F.
  3. Embo Journal. 2011, Sep; 30(18): 3714-3728.
  1. 9.   Impact of chromatin structure on sequence variability in the human genome
  2. Tolstorukov, M. Y.; Volfovsky, N.; Stephens, R. M.; Park, P. J.
  3. Nature Structural & Molecular Biology. 2011, Apr; 18(4): 510-U152.
  1. 10.   Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences
  2. Tao, Y. G.; Xi, S. C.; Shan, J. G.; Maunakea, A.; Che, A.; Briones, V.; Lee, E. Y.; Geiman, T.; Huang, J. Q.; Stephens, R.; Leighty, R. M.; Zhao, K. J.; Muegge, K.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Apr; 108(14): 5626-5631.
  1. 11.   Carnivore-Specific SINEs (Can-SINEs): Distribution, Evolution, and Genomic Impact
  2. Walters-Conte, K. B.; Johnson, D. L. E.; Allard, M. W.; Pecon-Slattery, J.
  3. Journal of Heredity. 2011, Sep-Oct; 102: S2-S10.
  1. 12.   Nodal Signaling Recruits the Histone Demethylase Jmjd3 to Counteract Polycomb-Mediated Repression at Target Genes
  2. Dahle, O.; Kumar, A.; Kuehn, M. R.
  3. Science Signaling. 2010, Jun; 3(127): 8.
  1. 13.   Mechanisms of transcription factor selectivity
  2. Pan, Y. P.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Trends in Genetics. 2010, Feb; 26(2): 75-83.
  1. 14.   MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains
  2. Akagi, K.; Stephens, R. M.; Li, J. F.; Evdokimov, E.; Kuehn, M. R.; Volfovsky, N.; Symer, D. E.
  3. Nucleic Acids Research. 2010, Jan; 38(Database issue): D600-D606.
  1. 15.   P-Body Components Are Required for Ty1 Retrotransposition during Assembly of Retrotransposition-Competent Virus-Like Particles
  2. Checkley, M. A.; Nagashima, K.; Lockett, S. J.; Nyswaner, K. M.; Garfinkel, D. J.
  3. Molecular and Cellular Biology. 2010, Jan; 30(2): 382-398.
  1. 16.   Artifacts of the 1.9x Feline Genome Assembly Derived from the Feline-Specific Satellite Sequence
  2. Pontius, J. U.; O'Brien, S. J.
  3. Journal of Heredity. 2009 100: S14-S18.
  1. 17.   Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22
  2. Volfovsky, N.; Oleksyk, T. K.; Cruz, K. C.; Truelove, A. L.; Stephens, R. M.; Smith, M. W.
  3. Bmc Genomics. 2009 10 AR 51
  1. 18.   Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition
  2. Akagi, K.; Li, J. F.; Stephens, R. M.; Volfovsky, N.; Symer, D. E.
  3. Genome Research. 2008 18(6): 869-880.
  1. 19.   DNA hypomethylation caused by Lsh deletion promotes erythroleukemia development
  2. Fan, T.; Schmidtmann, A.; Xi, S.; Briones, V.; Zhu, H. M.; Suh, H. C.; Gooya, J.; Keller, J. R.; Xu, H.; Roayaei, J.; Anver, M.; Ruscetti, S.; Muegge, K.
  3. Epigenetics. 2008 3(3): 134-142.
  1. 20.   Ligand binding and circular permutation modify residue interaction network in DHFR
  2. Hu, Z. J.; Bowen, D.; Southerl, W. M.; del Sol, A.; Pan, Y. P.; Nussinov, R.; Ma, B. Y.
  3. Plos Computational Biology. 2007, Jun; 3(6): 1097-1107.
  1. 21.   Human T-cell leukemia virus type 1 integration target sites in the human genome: Comparison with those of other retroviruses
  2. Derse, D.; Crise, B.; Li, Y.; Princler, G.; Lum, N.; Stewart, C.; McGrath, C. F.; Hughes, S. H.; Munroe, D. J.; Wu, X. L.
  3. Journal of Virology. 2007, Jun; 81(12): 6731-6741.
  1. 22.   Post-transcriptional control of the interferon system
  2. Khabar, K. S. A.; Young, H. A.
  3. Biochimie. 2007, Jun-Jul; 89(6-7): 761-769.
  1. 23.   Lsh is required for meiotic chromosome synapsis and retrotransposon silencing in female germ cells
  2. De la Fuente, R.; Baumann, C.; Fan, T.; Schmidtmann, A.; Dobrinski, I.; Muegge, K.
  3. Nature Cell Biology. 2006, Dec; 8(12): 1448-U85.
  1. 24.   Repetitive DNA elements as mediators of genomic change in response to environmental cues
  2. Schmidt, A. L.; Anderson, L. M.
  3. Biological Reviews. 2006, Nov; 81(4): 531-543.
  1. 25.   A pseudoknot in a preactive form of a viral RNA is part of a structural switch activating minus-strand synthesis
  2. Zhang, J. C.; Zhang, G. H.; Guo, R.; Shapiro, B. A.; Simon, A. E.
  3. Journal of Virology. 2006, Sep; 80(18): 9181-9191.
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