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  1. 1.   Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
  2. Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G; Zheng, Lily; Zhao,Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A; Xiao, Wenming; Meerzaman, Daoud M
  3. Genome Biology. 2024, Jun 20; 25(1): 163.
  1. 2.   Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
  2. Talsania,Keyur; Shen,Tsai-Wei; Chen, Xiongfong; Jaeger, Erich; Li, Zhipan; Chen, Zhong; Chen, Wanqiu; Tran,Bao; Kusko, Rebecca; Wang, Limin; Pang, Andy Wing Chun; Yang, Zhaowei; Choudhari, Sulbha; Colgan, Michael; Fang, Li Tai; Carroll, Andrew; Shetty,Jyoti; Kriga,Yuliya; German,Oksana; Smirnova,Tatyana; Liu, Tiantain; Li, Jing; Kellman, Ben; Hong, Karl; Hastie, Alex R; Natarajan, Aparna; Moshrefi, Ali; Granat, Anastasiya; Truong, Tiffany; Bombardi, Robin; Mankinen, Veronnica; Meerzaman, Daoud; Mason, Christopher E; Collins, Jack; Stahlberg, Eric; Xiao, Chunlin; Wang, Charles; Xiao, Wenming; Zhao,Yongmei
  3. Genome Biology. 2022, Dec 13; 23(1): 255.
  1. 3.   Systematic Analysis of Kaposi's Sarcoma-associated Herpesvirus Genomes from a Kaposi's Sarcoma (KS) Case-Control Study in Cameroon: Evidence of Dual Infections but No Association Between Viral Sequence Variation and KS Risk
  2. Marshall,Vickie; Fisher, Nicholas C; Goodman,Charles; Cornejo Castro,Elena; Liu, Isabella; Khanal, Sirish; Holdridge,Benjamin; Thorpe, Abigail L; Labo,Nazzarena; Stolka, Kristen B; Hemingway-Foday, Jennifer J; Abassora, Mahamat; N'Dom, Paul; Smith, Jennifer S; Sallah, Neneh; Palser, Anne L; Kellam, Paul; Keele,Brandon; Whitby,Denise
  3. International Journal of Cancer. 2022, May 24;
  1. 4.   HIV-DRLink: A Tool for Reporting Linked HIV-1 Drug Resistance Mutations in Large Single-Genome Datasets Using the Stanford HIV Database
  2. Shao,Wei; Boltz,Valerie; Hattori, Junko; Bale, Michael J; Maldarelli,Frank; Coffin,John; Kearney,Mary
  3. AIDS research and human retroviruses. 2020, AUG 27;
  1. 5.   Functional evaluation of five BRCA2 unclassified variants identified in a Sri Lankan cohort with inherited cancer syndromes using a mouse embryonic stem cell-based assay
  2. Sirisena, Nirmala; Biswas,Kajal; Sullivan,Teresa; Stauffer,Stacey; Cleveland, Linda; Southon,Eileen; Dissanayake, Vajira H W; Sharan,Shyam
  3. Breast cancer research : BCR. 2020, May 11; 22(1): 43.
  1. 6.   Sequence conservation of mitochondrial (mt)DNA during expansion of clonal mammary epithelial populations suggests a common mtDNA template in CzechII mice
  2. Johnson, Jabril R; Lack,Justin; Boulanger, Corinne A; Ragle, Lauren E; Smith, Gilbert H
  3. Oncotarget. 2020, Jan 14; 11(2): 161-174.
  1. 7.   Construction and next-generation sequencing analysis of a large phage-displayed VNAR single-domain antibody library from six naïve nurse sharks
  2. Feng, Mingqian; Bian, Hejiao; Wu, Xiaolin; Fu, Tianyun; Fu, Ying; Hong, Jessica; Fleming, Bryan D; Flajnik, Martin F; Ho, Mitchell
  3. Antibody therapeutics. 2019, Jan; 2(1): 1-11.
  1. 8.   Clinical Applications of Next-Generation Sequencing in Precision Oncology
  2. Karlovich,Chris; Williams,Mickey
  3. Cancer journal (Sudbury, Mass.). 2019, Jul/Aug; 25(4): 264-271.
  1. 9.   Genotyping of high-risk anal human papillomavirus (HPV): ion torrent-next generation sequencing vs. linear array
  2. Nowak, Rebecca G.; Ambulos, Nicholas P.; Schumaker, Lisa M.; Mathias, Trevor J.; White, Ruth A.; Troyer, Jennifer; Wells, David; Charurat, Manhattan E.; Bentzen, Soren M.; Cullen, Kevin J.
  3. Virology Journal. 2017, Jun 13; 14(1): 112.
  1. 10.   Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.
  2. Boltz, Valerie; Rausch, Jason; Shao, Wei; Hattori, Takaaki; Luke, Brian; Maldarelli, Frank; Mellors, John W; Kearney, Mary F; Coffin, John
  3. Retrovirology. 2016, Dec 20; 13(1): 87.
  1. 11.   Measuring Tumor Mutational Burden Using Whole-Exome Sequencing
  2. Vilimas,Tomas
  3. Methods in molecular biology (Clifton, N.J.). 2020 2055: 63-91.
  1. 12.   Innovative Technologies for Advancement of WHO Risk Group 4 Pathogens Research
  2. Logue, James; Solomon,Jeffrey; Niemeyer, Brian F.; Benam, Kambez H.; Lin, Aaron E.; Bjornson, Zach; Jiang, Sizun; McIlwain, David R.; Nolan, Garry P.; Palacios, Gustavo; Kuhn, Jens H.
  3. 2019; 437-469.
  1. 13.   Quality Control of an Isogenic H/N/KRAS-Less Mouse Embryonic Fibroblast Cell Line Panel
  2. Xu,Bingfang; Powell,Katie
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2797: 337-350.
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