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  1. 1.   Identification of molecular determinants of gene-specific bursting patterns by high-throughput imaging screens
  2. Sood, Varun; Holewinski,Ronald; Andresson,Thorkell; Larson, Daniel R; Misteli, Tom
  3. Molecular Cell. 2025, Feb 11;
  1. 2.   Protocol for cytoskeleton staining of the semi-adherent multiple myeloma cell line RPMI 8226 by immunofluorescence
  2. Osei Amponsa,Vasty; Magidson,Valentin; Walters,Kylie
  3. STAR Protocols. 2024, May 02; 5(2): 103060.
  1. 3.   Screen for New Antimicrobial Natural Products from the NCI Program for Natural Product Discovery Prefractionated Extract Library
  2. Martínez-Fructuoso, Lucero; Arends, S J Ryan; Freire,Vitor; Evans,Jason; DeVries, Sean; Peyser,Brian; Akee,Rhone; Thornburg,Chris; Kumar,Rohitesh; Ensel,Susan; Morgan, Gina M; McConachie, Grant D; Veeder, Nathan; Duncan, Leonard R; Grkovic,Tanja; O'Keefe,Barry
  3. ACS Infectious Diseases. 2023, May 10;
  1. 4.   Detecting genomic deletions from high-throughput sequence data with unsupervised learning
  2. Li,Xin; Wu, Yufeng
  3. BMC Bioinformatics. 2023, Jan 27; 23(Suppl 8): 568.
  1. 5.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 6.   Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation
  2. Abulwerdi, Fardokht; Fatehi, Farzad; Manfield, Iain W; Le Grice,Stuart; Schneekloth,Jay; Twarock, Reidun; Stockley, Peter G; Patel, Nikesh
  3. Data in Brief. 2022, Jun; 42: 108206.
  1. 7.   Complex Tumor Spheroids, a Tissue-Mimicking Tumor Model, for Drug Discovery and Precision Medicine
  2. Kaur, Gurmeet; Evans, David M.; Teicher, Beverly A.; Coussens,Nathan
  3. SLAS Discovery. 2021, Nov 12;
  1. 8.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 9.   Arrow pushing in RNA modification sequencing
  2. Bartee,David; Thalalla Gamage,Supuni; Link,Courtney; Meier,Jordan
  3. Chemical Society reviews. 2021, Jul 14;
  1. 10.   Sensitivity of Oncogenic KRAS-Expressing Cells to CDK9 Inhibition
  2. Lai, Lick Pui; Brel, Viviane; Sharma, Kanika; Frappier, Julia; Le-Henanf, Nadia; Vivet, Bertrand; Muzet, Nicolas; Schell, Emilie; Morales, Renaud; Rooney, Eamonn; Basse, Nicolas; Yi,Ming; Lacroix, Frederic; Holderfield, Matthew; Englaro, Walter; Marcireau, Christophe; Debussche, Laurent; Nissley,Dwight; McCormick, Frank
  3. SLAS DISCOVERY. 2021, Apr 24; 26(7, SI): 922-932.
  1. 11.   A Molecular Networking Strategy: High-Throughput Screening and Chemical Analysis of Brazilian Cerrado Plant Extracts against Cancer Cells
  2. Cortelo, Patricia C.; Demarque, Daniel P.; Dusi, Renata G.; Albernaz, Lorena C.; Braz-Filho, Raimundo; Goncharova, Ekaterina I.; Bokesch, Heidi R.; Gustafson, Kirk R.; Beutler, John A.; Espindola, Laila S.
  3. Cells. 2021, Mar; 10(3):
  1. 12.   IgG3 enhances neutralization potency and Fc effector function of an HIV V2-specific broadly neutralizing antibody
  2. Richardson, Simone I; Lambson, Bronwen E; Crowley, Andrew R; Bashirova,Arman; Scheepers, Cathrine; Garrett, Nigel; Abdool Karim, Salim; Mkhize, Nonhlanhla N; Carrington,Mary; Ackerman, Margaret E; Moore, Penny L; Morris, Lynn
  3. PLoS pathogens. 2019, Dec 16; 15(12): e1008064.
  1. 13.   Physiologically relevant orthogonal assays for the discovery of small-molecule modulators of WIP1 phosphatase in high-throughput screens
  2. Clausse, Victor; Tao, Dingyin; Debnath, Subrata; Fang, Yuhong; Tagad, Harichandra D; Wang, Yuhong; Sun, Hongmao; LeClair, Christopher A; Mazur, Sharlyn J; Lane, Kelly; Shi, Zhen-Dan; Vasalatiy, Olga; Eells, Rebecca; Baker, Lynn K; Henderson, Mark J; Webb, Martin R; Shen, Min; Hall, Matthew D; Appella, Ettore; Appella, Daniel H; Coussens,Nathan
  3. The Journal of biological chemistry. 2019, Nov 15; 294(46): 17654-17668.
  1. 14.   Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility
  2. Stavreva, Diana A; Garcia, David A; Fettweis, Gregory; Gudla, Prabhakar R; Zaki,George; Soni, Vikas; McGowan, Andrew; Williams, Geneva; Huynh, Anh; Palangat, Murali; Schiltz, R Louis; Johnson, Thomas A; Presman, Diego M; Ferguson, Matthew L; Pegoraro, Gianluca; Upadhyaya, Arpita; Hager, Gordon L
  3. Molecular cell. 2019, SEP 19; 75(6): 1161-+.
  1. 15.   Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
  2. Vasaikar, Suhas; Huang, Chen; Wang, Xiaojing; Petyuk, Vladislav A.; Savage, Sara R.; Wen, Bo; Dou, Yongchao; Zhang, Yun; Shi, Zhiao; Arshad, Osama A.; Gritsenko, Marina A.; Zimmerman, Lisa J.; McDermott, Jason E.; Clauss, Therese R.; Moore, Ronald J.; Zhao, Rui; Monroe, Matthew E.; Wang, Yi-Ting; Chambers, Matthew C.; Slebos, Robbert J. C.; Lau, Ken S.; Mo, Qianxing; Ding, Li; Ellis, Matthew; Thiagarajan,Mathangi; Kinsinger, Christopher R.; Rodriguez, Henry; Smith, Richard D.; Rodland, Karin D.; Liebler, Daniel C.; Liu, Tao; Zhang, Bing; Ellis, Matthew J. C.; Bavarva, Jasmin; Borucki, Melissa; Elburn, Kimberly; Hannick, Linda; Vatanian, Negin; Payne, Samuel H.; Carr, Steven A.; Clauser, Karl R.; Gillette, Michael A.; Kuhn, Eric; Mani, D. R.; Cai, Shuang; Ketchum, Karen A.; Thangudu, Ratna R.; Whiteley, Gordon A.; Paulovich, Amanda; Whiteaker, Jeff; Edward, Nathan J.; Madhavan, Subha; McGarvey, Peter B.; Chan, Daniel W.; Shih, Ie-Ming; Zhang, Hui; Zhang, Zhen; Zhu, Heng; Skates, Steven J.; White, Forest M.; Mertins, Philip; Pandey, Akhilesh; Slebos, Robert J. C.; Boja, Emily; Hiltke, Tara; Kinsinger, Christopher R.; Mesri, Mehdi; Rivers, Robert C.; Stein, Stephen E.; Fenyo, David; Ruggles, Kelly; Levine, Douglas A.; Oberti, Mauricio; Rudnick, Paul A.; Snyder, Michael; Tabb, David L.; Zhao, Yingming; Chen, Xian; Ransohoff, David F.; Hoofnagle, Andrew; Sanders, Melinda E.; Wang, Yue; Davies, Sherri R.; Townsend, R. Reid; Watson, Mark
  3. CELL. 2019, May 2; 177(4): 1035-1049.e19.
  1. 16.   Ligand binding to a remote site thermodynamically corrects the F508del mutation in the human cystic fibrosis transmembrane conductance regulator
  2. Wang, Chi; Aleksandrov, Andrei A.; Yang, Zhengrong; Forouhar, Farhad; Proctor, Elizabeth A.; Kota, Pradeep; An, Jianli; Kaplan, Anna; Khazanov, Netaly; Boel, Gregory; Stockwell, Brent R.; Senderowitz, Hanoch; Dokholyan, Nikolay V.; Riordan, John R.; Brouillette, Christie G.; Hunt, John F.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, NOV 16; 293(46): 17685-17704.
  1. 17.   Discovery of RNA Binding Small Molecules Using Small Molecule Microarrays
  2. Connelly, Colleen; Abulwerdi, Fardokht; Schneekloth, Jay
  3. Methods in Molecular Biology. 2017 1518: 157-175.
  1. 18.   High-throughput single-molecule screen for small-molecule perturbation of splicing and transcription kinetics
  2. Day, C. R.; Chen, H.; Coulon, A.; Meier, J. L.; Larson, D. R.
  3. Methods (San Diego, Calif.). 2016, 1-Mar; 96: 59-68.
  1. 19.   Production of Furin-Cleaved Papillomavirus Pseudovirions and Their Use for In Vitro Neutralization Assays of L1- or L2-Specific Antibodies
  2. Wang, J. W.; Matsui, K.; Pan, Y.; Kwak, K.; Peng, S.; Kemp, T.; Pinto, L.; Roden, R. B.
  3. Current protocols in microbiology. 2015 38: 14B 5 1-26.
  1. 20.   Performance comparison of SNP detection tools with illumina exome sequencing data--an assessment using both family pedigree information and sample-matched SNP array data
  2. Yi, M.; Zhao, Y.; Jia, L.; He, M.; Kebebew, E.; Stephens, R. M.
  3. Nucleic Acids Research. 2014, Jul; 42(12): e101.
  1. 21.   Next-generation sequencing for HLA typing of class I loci
  2. Erlich, R. L.; Jia, X. M.; Anderson, S.; Banks, E.; Gao, X. J.; Carrington, M.; Gupta, N.; DePristo, M. A.; Henn, M. R.; Lennon, N. J.; de Bakker, P. I. W.
  3. Bmc Genomics. 2011, Jan; 12: 13.
  1. 22.   Development of a High-Throughput Cell-Based Reporter Assay to Identify Stabilizers of Tumor Suppressor Pdcd4
  2. Blees, J. S.; Schmid, T.; Thomas, C. L.; Baker, A. R.; Benson, L.; Evans, J. R.; Goncharova, E. I.; Colburn, N. H.; McMahon, J. B.; Henrich, C. J.
  3. Journal of Biomolecular Screening. 2010, Jan; 15(1): 21-29.
  1. 23.   Recent Development of Cyclic Amide (Pyridone/Lactam) Moiety Containing Heterocycles as Protein Kinase Inhibitors
  2. Wei, L. Y.; Malhotra, S. V.
  3. Current Medicinal Chemistry. 2010, Jan; 17(3): 234-253.
  1. 24.   Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
  2. Huang, D. W.; Sherman, B. T.; Lempicki, R. A.
  3. Nucleic Acids Research. 2009 37(1): 1-13.
  1. 25.   Natural products active in aberrant c-Kit signaling
  2. Henrich, C. J.; Goncharova, E. I.; Wilson, J. A.; Gardella, R. S.; Johnson, T. R.; McMahon, J. B.; Takada, K.; Bokesch, H. R.; Gustafson, K. R.
  3. Chemical Biology & Drug Design. 2007, May; 69(5): 321-330.
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