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  1. 1.   Transcription factor Tox2 is required for metabolic adaptation and tissue residency of ILC3 in the gut
  2. Das, Arundhoti; Martinez-Ruiz, Gustavo Ulises; Bouladoux, Nicolas; Stacy, Apollo; Moraly, Josquin; Vega-Sendino, Maria; Zhao, Yongge; Lavaert, Marieke; Ding, Yi; Morales-Sanchez, Abigail; Harly, Christelle; Seedhom, Mina O; Chari,Raj; Awasthi, Parirokh; Ikeuchi, Tomoko; Wang, Yueqiang; Zhu, Jinfang; Moutsopoulos, Niki M; Chen, WanJun; Yewdell, Jonathan W; Shapiro, Virginia Smith; Ruiz, Sergio; Taylor, Naomi; Belkaid, Yasmine; Bhandoola, Avinash
  3. Immunity. 2024, May 14; 57(5): 1019-1036.
  1. 2.   Adaptation of HIV-1/HIV-2 Chimeras with Defects in Genome Packaging and Viral Replication
  2. Rawson, Jonathan M O; Nikolaitchik,Olga; Yoo, Jennifer A; Somoulay, Xayathed; Brown, Matthew A; Mbuntcha Bogni, Franck S; Pathak,Vinay; Soheilian,Ferri; Slack, Ryan L; Sarafianos, Stefan G; Hu,Wei-Shau
  3. mBio. 2022, Aug 29; e0222022.
  1. 3.   Parallel and Population-specific Gene Regulatory Evolution in Cold-Adapted Fly Populations
  2. Huang, Yuheng; Lack,Justin; Hoppel, Grant T.; Pool, John E.
  3. Genetics. 2021, May 14; 218
  1. 4.   Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape
  2. Immonen,Taina; Camus, Celine; Reid, Carolyn; Fennessey,Christine; Del Prete,Greg; Davenport, Miles P; Lifson,Jeffrey; Keele,Brandon
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, Jan 7; 117(1): 494-502.
  1. 5.   Genotypic and functional impact of HIV-1 adaptation to its host population during the North American epidemic
  2. Cotton, L. A.; Kuang, X. T.; Le, A. Q.; Carlson, J. M.; Chan, B.; Chopera, D. R.; Brumme, C. J.; Markle, T. J.; Martin, E.; Shahid, A.; Anmole, G.; Mwimanzi, P.; Nassab, P.; Penney, K. A.; Rahman, M. A.; Milloy, M. J.; Schechter, M. T.; Markowitz, M.; Carrington, M.; Walker, B. D.; Wagner, T.; Buchbinder, S.; Fuchs, J.; Koblin, B.; Mayer, K. H.; Harrigan, P. R.; Brockman, M. A.; Poon, A. F.; Brumme, Z. L.
  3. Plos Genetics. 2014, Apr; 10(4): e1004295.
  1. 6.   Attenuation of Neurovirulence, Biodistribution, and Shedding of a Poliovirus:Rhinovirus Chimera after Intrathalamic Inoculation in Macaca fascicularis
  2. Dobrikova, E. Y.; Goetz, C.; Walters, R. W.; Lawson, S. K.; Peggins, J. O.; Muszynski, K.; Ruppel, S.; Poole, K.; Giardina, S. L.; Vela, E. M.; Estep, J. E.; Gromeier, M.
  3. Journal of Virology. 2012, Mar; 86(5): 2750-2759.
  1. 7.   Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection
  2. Batorsky, R.; Kearney, M. F.; Palmer, S. E.; Maldarelli, F.; Rouzine, I. M.; Coffin, J. M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Apr; 108(14): 5661-5666.
  1. 8.   Isolation and Characterization of the CYP2D6 Gene in Felidae with Comparison to Other Mammals
  2. Schenekar, T.; Winkler, K. A.; Troyer, J. L.; Weiss, S.
  3. Journal of Molecular Evolution. 2011, Feb; 72(2): 222-231.
  1. 9.   Energy cost of infection burden: An approach to understanding the dynamics of host-pathogen interactions
  2. Romanyukha, A. A.; Rudnev, S. G.; Sidorov, I. A.
  3. Journal of Theoretical Biology. 2006, Jul; 241(1): 1-13.
  1. 10.   Control of human immunodeficiency virus replication by cytotoxic T lymphocytes targeting subdominant epitopes
  2. Frahm, N.; Kiepiela, P.; Adams, S.; Linde, C. H.; Hewitt, H. S.; Sango, K.; Feeney, M. E.; Addo, M. M.; Lichterfeld, M.; Lahaie, M. P.; Pae, E.; Wurcel, A. G.; Roach, T.; St John, M. A.; Altfeld, M.; Marincola, F. M.; Moore, C.; Mallal, S.; Carrington, M.; Heckerman, D.; Allen, T. M.; Mullins, J. I.; Korber, B. T.; Goulder, P. J. R.; Walker, B. D.; Br, er
  3. Nature Immunology. 2006, FEB; 7(2): 173-178.
  1. 11.   Crystallography and the design of anti-AIDS drugs: Conformational flexibility and positional adaptability are important in the design of non-nucleoside HIV-1 reverse transcriptase inhibitors
  2. Das, K.; Lewi, P. J.; Hughes, S. H.; Arnold, E.
  3. Progress in Biophysics and Molecular Biology. 2005, JUN; 88(2): 209-231.
  1. 12.   Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli
  2. Liu, M. Z.; Durfee, T.; Cabrera, J. E.; Zhao, K.; Jin, D. J.; Blattner, F. R.
  3. Journal of Biological Chemistry. 2005, APR 22; 280(16): 15921-15927.
  1. 13.   Big cat genomics
  2. O'Brien, S. J.; Johnson, W. E.
  3. Annual review of genomics and human genetics. 2005 6: 407-429.
  1. 14.   Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants
  2. Das, K.; Clark, A. D.; Lewi, P. J.; Heeres, J.; de Jonge, M. R.; Koymans, L. M. H.; Vinkers, H. M.; Daeyaert, F.; Ludovici, D. W.; Kukla, M. J.; De Corte, B.; Kavash, R. W.; Ho, C. Y.; Ye, H.; Lichtenstein, M. A.; Andries, K.; Pauwels, R.; de Bethune, M. P.; Boyer, P. L.; Clark, P.; Hughes, S. H.; Janssen, P. A. J.; Arnold, E.
  3. Journal of Medicinal Chemistry. 2004 47(10): 2550-2560.
  1. 15.   Different roles of electrostatics in heat and in cold: Adaptation by citrate synthase
  2. Kumar, S.; Nussinov, R.
  3. Chembiochem. 2004 5(3): 280-290.
  1. 16.   Fumonisin-induced hepatocarcinogenesis: Mechanisms related to cancer initiation and promotion
  2. Gelderblom, W. C. A.; Abel, S.; Smuts, C. M.; Marnewick, J.; Marasas, W. F. O.; Lemmer, E. R.; Ramljak, D.
  3. Environmental Health Perspectives. 2001 109: 291-300.
  1. 17.   How do thermophilic proteins deal with heat?
  2. Kumar, S.; Nussinov, R.
  3. Cellular and Molecular Life Sciences. 2001 58(9): 1216-1233.
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