References
- General Recombineering
Thomason, L. C., Sawitzke, J. A., Li, X., Costantino, N. & Court, D. L. (2014). Recombineering: genetic engineering in bacteria using homologous recombination. Curr Protoc Mol Biol 106, 1 16 1-1 16 39. CPMB 2014.pdf
Sawitzke, J. A., Thomason, L. C., Bubunenko, M., Li, X., Costantino, N. & Court, D. L. (2013). Recombineering: Using Drug Cassettes to Knock out Genes in vivo. Methods Enzymol. 533, 79-102. MIE dsDNA 2013.pdf
Datta, S., Costantino, N., Zhou, X. & Court, D. L. (2008). Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages. Proc. Natl. Acad. Sci. USA 105, 1626-1631. Datta-2008 PNAS .pdf
Bubunenko, M., Baker, T. & Court, D. L. (2007). Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J Bacteriol 189, 2844-53. Bubunenko-2007 J. bact.pdf
Datta, S., Costantino, N. & Court, D. L. (2006). A set of recombineering plasmids for gram-negative bacteria. Gene 379, 109-115. Datta-2006 Gene.pdf
Yu, D., Sawitzke, J. A., Ellis, H. & Court, D. L. (2003). Recombineering with overlapping single-stranded DNA oligonucleotides: testing a recombination intermediate. Proc. Natl. Acad. Sci. USA 100, 7207-7212. PNAS2003-overlap.pdf
Court, D. L., Swaminathan, S., Yu, D., Wilson, H., Baker, T., Bubunenko, M., Sawitzke, J. & Sharan, S. K. (2003). Mini-λ: a tractable system for chromosome and BAC engineering. Gene 315, 63-69. Court-2003 Gene.pdf
Yu, D., Ellis, H. M., Lee, E. C., Jenkins, N. A., Copeland, N. G. & Court, D. L. (2000). An efficient recombination system for chromosome engineering in Escherichia coli. Proc. Natl. Acad. Sci. USA 97, 5978-5983. Yu-2000 PNAS.pdf
Li, X., Thomason, L. C., Sawitzke, J. A., Costantino, N., & Court, D. L. (2013). Positive and negative selection using the tetA-sacB cassette: recombineering and P1 transduction in Escherichia coli. Nucleic Acids Res., 41, e204. Li-2013 NAR.pdf
- High Throughput
Chan, W., Costantino, N., Li, R., Lee, S.C., Su, Q., Melvin, D., Court, D.L., and Liu, P. 2007. A recombineering based approach for high-throughput conditional knockout targeting vector construction. Nucleic Acids Res 35(8): e64. high throughput.pdf
- ssDNA recombineering
Li, X. T., Thomason, L. C., Sawitzke, J. A., Costantino, N. & Court, D. L. (2013). Bacterial DNA polymerases participate in oligonucleotide recombination. Mol. Microbiol. 88, 906-20. Polymerases and ssDNA recombination.pdf
Sawitzke, J. A., Thomason, L. C., Bubunenko, M., Li, X., Costantino, N. & Court, D. L. (2013). Recombineering: Highly Efficient in vivo Genetic Engineering using Single-strand Oligos. Methods Enzymol. 533, 157-77. MIE 2013 ssDNA.pdf
Sawitzke, J. A., Costantino, N., Li, X. T., Thomason, L. C., Bubunenko, M., Court, C. & Court, D. L. (2011). Probing Cellular Processes with Oligo-Mediated Recombination and Using the Knowledge Gained to Optimize Recombineering. J. Mol. Biol. Oligo optimization.pdf
Li, X. T., Costantino, N., Lu, L. Y., Liu, D. P., Watt, R. M., Cheah, K. S., Court, D. L. & Huang, J. D. (2003). Identification of factors influencing strand bias in oligonucleotide-mediated recombination in Escherichia coli. Nucleic Acids Res. 31, 6674-6687. Li-2003 Nuc acid res.pdf
Costantino, N. & Court, D. L. (2003). Enhanced levels of λ Red-mediated recombinants in mismatch repair mutants. Proc. Natl. Acad. Sci. USA 100, 15748-15753. Costantino-2003 PNAS.pdf
Ellis, H. M., Yu, D., DiTizio, T. & Court, D. L. (2001). High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides. Proc. Natl. Acad. Sci. USA 98, 6742-6746. Ellis-2001 PNAS.pdf
- Recombineering to BACs.
Warming, S., Costantino, N., Court, D. L., Jenkins, N. A. & Copeland, N. G. (2005). Simple and highly efficient BAC recombineering using galK selection. Nucleic Acids Res. 33, e36. Warming-2005 Nuc acid res.pdf
Swaminathan, S., Ellis, H. M., Waters, L. S., Yu, D., Lee, E.-C., Court, D. L. & Sharan, S. K. (2001). Rapid engineering of bacterial artificial chromosomes using oligonucleotides. Genesis 29, 14-21. Swaminathan-2001 Genesis.pdf
Lee, E. C., Yu, D., Martinez de Velasco, J., Tessarollo, L., Swing, D. A., Court, D. L., Jenkins, N. A. & Copeland, N. G. (2001). A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA. Genomics 73, 56-65. Lee-2001 Genomics.pdf
- Recombineering to plasmids.
Thomason, L. C., Costantino, N., Shaw, D. V. & Court, D. L. (2007). Multicopy plasmid modification with phage λ Red recombineering. Plasmid 58, 148-158. Thomason-2007 Plasmid.pdf
- Recombineering to phage.
Thomason, L. C., Oppenheim, A. B. & Court, D. L. (2009). Modifying bacteriophage lambda with recombineering. Methods Mol Biol 501, 239-51. Thomason-2009 Met MB.pdf
Oppenheim, A. B., Rattray, A. J., Bubunenko, M., Thomason, L. C. & Court, D. L. (2004). In vivo recombineering of bacteriophage λ by PCR fragments and single-strand oligonucleotides. Virology 319, 185-189. Oppenheim-2004 Virol.pdf
- "Recombinase"-independent recombineering.
Swingle, B., Markel, E., Costantino, N., Bubunenko, M. G., Cartinhour, S. & Court, D. L. (2010). Oligonucleotide recombination in Gram-negative bacteria. Mol. Microbiol. 75, 138-148. Swingle-2010 Mol micro.pdf
- Recombineering reviews.
Thomason, L. C., Sawitzke, J. A., Li, X., Costantino, N. & Court, D. L. (2014). Recombineering: genetic engineering in bacteria using homologous recombination. Curr Protoc Mol Biol 106, 1 16 1-1 16 39. CPMB 2014.pdf
Sharan, S. K., Thomason, L. C., Kuznetsov, S. G. & Court, D. L. (2009). Recombineering: a homologous recombination-based method of genetic engineering. Nat. Prot. 4, 206-223. Sharan-2009 Nature Protoc.pdf
Sawitzke, J. A., Thomason, L. C., Costantino, N., Bubunenko, M., Datta, S. & Court, D. L. (2007). Recombineering: in vivo genetic engineering in E. coli, S. enterica, and beyond. Methods Enzymol. 421, 171-199. MIE review.pdf
Thomason, L., Court, D. L., Bubunenko, M., Costantino, N., Wilson, H., Datta, S. & Oppenheim, A. (2007). Recombineering: Genetic engineering in bacteria using homologous recombination. In Current Protocols in Molecular Biology (Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K., eds.), Vol. 1, pp. Unit 16 p. 1-24. 6 vols. John Wiley & Sons, Inc., Hoboken, N.J. CurrentProtocols.pdf
Thomason, L. C., Myers, R. S., Oppenheim, A., Costantino, N., Sawitzke, J. A., Datta, S., Bubunenko, M. & Court, D. L. (2005). Recombineering in Prokaryotes. In Phages: Their Role in Bacterial Pathogenesis and Biotechnology (Waldor, M. K., Friedman, D. I. & Adhya, S. L., eds.), pp. 383-399. ASM Press, Washinton, D.C.
Court, D. L., Sawitzke, J. A. & Thomason, L. C. (2002). Genetic engineering using homologous recombination. Annu. Rev. Genet. 36, 361-388. Courtetal2002.pdf
Copeland, N. G., Jenkins, N. A. & Court, D. L. (2001). Recombineering: a powerful new tool for mouse functional genomics. Nat. Rev. Genet. 2, 769-779. Copeland-2001 Nat rev Genet.pdf
Using tetA-sacB.